Wall clock time and date at job start Mon Mar 30 2020 01:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46847 * 110.99770 * 2 1 4 4 C 1.53057 * 109.50539 * 174.10842 * 3 2 1 5 5 C 1.53050 * 109.27166 * 59.09453 * 4 3 2 6 6 C 1.52969 * 109.53573 * 62.50749 * 5 4 3 7 7 C 1.53060 * 109.52839 * 58.71076 * 6 5 4 8 8 C 1.53184 * 109.30544 * 61.26903 * 7 6 5 9 9 N 1.46921 * 108.92854 * 305.30455 * 8 7 6 10 10 C 1.34782 * 120.63358 * 233.66109 * 9 8 7 11 11 O 1.21688 * 120.00124 * 354.70286 * 10 9 8 12 12 C 1.46368 * 119.99883 * 174.69464 * 10 9 8 13 13 H 1.08005 * 120.00117 * 6.11741 * 12 10 9 14 14 C 1.40049 * 120.00032 * 186.11643 * 12 10 9 15 15 N 1.30673 * 120.00264 * 0.02562 * 14 12 10 16 16 Si 1.86805 * 120.00058 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47375 * 90.00088 * 16 14 12 18 18 H 1.48495 * 109.47321 * 210.00084 * 16 14 12 19 19 H 1.48500 * 109.47109 * 329.99909 * 16 14 12 20 20 C 1.47209 * 118.55838 * 53.53639 * 9 8 7 21 21 C 1.53028 * 109.30494 * 302.45071 * 5 4 3 22 22 C 1.46843 * 110.99960 * 235.76023 * 2 1 3 23 23 H 1.08998 * 109.47143 * 60.00308 * 1 2 3 24 24 H 1.08997 * 109.46951 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47204 * 299.99948 * 1 2 3 26 26 H 1.08996 * 109.46942 * 54.09750 * 3 2 1 27 27 H 1.09001 * 109.46578 * 294.11625 * 3 2 1 28 28 H 1.09001 * 109.50204 * 299.16093 * 4 3 2 29 29 H 1.08998 * 109.53551 * 179.05610 * 4 3 2 30 30 H 1.09005 * 109.46092 * 298.69535 * 6 5 4 31 31 H 1.08995 * 109.46619 * 178.73227 * 6 5 4 32 32 H 1.09004 * 109.49729 * 301.32054 * 7 6 5 33 33 H 1.08989 * 109.49938 * 181.22438 * 7 6 5 34 34 H 1.08997 * 109.57710 * 65.16892 * 8 7 6 35 35 H 1.08996 * 109.57622 * 185.43521 * 8 7 6 36 36 H 0.96995 * 120.00083 * 179.97438 * 15 14 12 37 37 H 1.08993 * 109.54001 * 186.76805 * 20 9 8 38 38 H 1.09003 * 109.68134 * 66.44167 * 20 9 8 39 39 H 1.08999 * 109.50417 * 177.46884 * 21 5 4 40 40 H 1.08993 * 109.50356 * 297.59034 * 21 5 4 41 41 H 1.08997 * 109.46162 * 305.88657 * 22 2 1 42 42 H 1.08999 * 109.46489 * 65.85841 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5182 1.3338 0.1481 5 6 4.1191 0.5346 -1.0107 6 6 3.8031 1.2352 -2.3333 7 6 4.3745 2.6549 -2.3096 8 6 5.8962 2.5858 -2.1480 9 7 6.2131 1.7910 -0.9537 10 6 7.0120 2.2892 0.0107 11 8 7.5557 3.3665 -0.1459 12 6 7.2254 1.5345 1.2465 13 1 6.8243 0.5366 1.3460 14 6 7.9497 2.1063 2.3000 15 7 8.4346 3.3137 2.1799 16 14 8.2228 1.1428 3.8769 17 1 9.4795 0.3594 3.7671 18 1 8.3247 2.0841 5.0209 19 1 7.0811 0.2189 4.0965 20 6 5.6370 0.4416 -0.8331 21 6 3.5183 -0.8727 -1.0198 22 6 1.9953 -0.7713 -1.1333 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.5629 1.9261 0.8324 27 1 1.7334 1.8605 -0.9380 28 1 3.7804 0.8578 1.0930 29 1 3.9109 2.3505 0.1313 30 1 2.7227 1.2808 -2.4711 31 1 4.2506 0.6773 -3.1558 32 1 3.9445 3.2062 -1.4733 33 1 4.1303 3.1610 -3.2435 34 1 6.3358 2.1149 -3.0273 35 1 6.2975 3.5927 -2.0338 36 1 8.9360 3.7098 2.9096 37 1 5.8655 0.0344 0.1517 38 1 6.0560 -0.2065 -1.6029 39 1 3.9102 -1.4302 -1.8704 40 1 3.7808 -1.3865 -0.0950 41 1 1.5630 -1.7719 -1.1236 42 1 1.7331 -0.2716 -2.0658 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374110564.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:52 Heat of formation + Delta-G solvation = -37.253119 kcal Electronic energy + Delta-G solvation = -21968.141665 eV Core-core repulsion = 18947.541231 eV Total energy + Delta-G solvation = -3020.600434 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.13340 -37.58515 -35.63266 -32.93762 -32.24300 -31.53069 -30.59990 -28.05032 -26.49111 -24.82409 -24.12819 -23.06502 -21.81484 -21.10108 -18.90960 -17.74859 -16.46342 -16.00290 -15.48976 -15.02178 -14.72599 -14.21451 -14.15435 -14.09619 -13.90263 -13.61736 -13.11092 -12.49506 -12.31947 -12.16799 -12.05653 -11.86978 -11.61754 -11.45858 -11.20288 -11.10766 -10.95316 -10.79123 -10.63824 -10.36085 -10.27168 -10.19431 -9.95388 -9.64942 -9.59116 -8.82278 -8.20284 -7.53290 -7.12920 -6.16485 -4.60105 3.16087 3.23358 3.26390 4.02270 4.11885 4.57517 4.60813 4.93575 4.98378 5.06183 5.23410 5.37019 5.37463 5.41017 5.52417 5.61407 5.67344 5.72061 5.79493 5.80910 5.86775 5.95084 5.99529 6.01774 6.15136 6.22584 6.25955 6.32263 6.46462 6.51916 6.55432 6.65663 6.72121 6.79120 6.95158 7.17275 7.20872 7.49702 7.68074 8.19195 8.41415 9.06287 9.49289 10.61607 10.80429 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020335 B = 0.006762 C = 0.005690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.597522 B = 4139.858371 C = 4919.500255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.542 5.542 3 C 0.056 3.944 4 C -0.099 4.099 5 C -0.072 4.072 6 C -0.105 4.105 7 C -0.134 4.134 8 C 0.121 3.879 9 N -0.639 5.639 10 C 0.561 3.439 11 O -0.580 6.580 12 C -0.542 4.542 13 H 0.072 0.928 14 C 0.089 3.911 15 N -0.770 5.770 16 Si 0.903 3.097 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.264 1.264 20 C 0.134 3.866 21 C -0.105 4.105 22 C 0.058 3.942 23 H 0.020 0.980 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.031 0.969 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.038 0.962 35 H 0.080 0.920 36 H 0.267 0.733 37 H 0.093 0.907 38 H 0.039 0.961 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.451 -7.535 -5.742 16.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.267 5.267 3 C -0.071 4.071 4 C -0.137 4.137 5 C -0.073 4.073 6 C -0.142 4.142 7 C -0.173 4.173 8 C -0.004 4.004 9 N -0.377 5.377 10 C 0.367 3.633 11 O -0.463 6.463 12 C -0.578 4.578 13 H 0.090 0.910 14 C -0.131 4.131 15 N -0.398 5.398 16 Si 0.727 3.273 17 H -0.198 1.198 18 H -0.205 1.205 19 H -0.188 1.188 20 C 0.010 3.990 21 C -0.143 4.143 22 C -0.070 4.070 23 H 0.038 0.962 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.049 0.951 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.056 0.944 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.111 0.889 38 H 0.057 0.943 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -12.857 -6.985 -5.305 15.564 hybrid contribution -0.307 -0.157 -0.035 0.347 sum -13.164 -7.143 -5.341 15.901 Atomic orbital electron populations 1.22329 0.88023 1.01565 1.00314 1.61921 1.06828 1.14479 1.43440 1.22174 0.96799 0.88277 0.99875 1.21565 0.92136 1.01543 0.98434 1.20913 0.96804 0.94440 0.95142 1.21584 0.99480 0.96276 0.96878 1.21969 0.97614 0.96606 1.01066 1.21083 0.92931 0.97864 0.88499 1.48182 1.52916 1.15402 1.21169 1.18214 0.77267 0.85502 0.82280 1.90588 1.51702 1.24090 1.79921 1.20958 1.36294 1.02246 0.98325 0.90967 1.25709 0.93607 0.94437 0.99322 1.70014 1.25752 1.13096 1.30980 0.86446 0.79387 0.80058 0.81371 1.19773 1.20519 1.18773 1.21471 0.89783 0.85596 1.02192 1.21578 0.93650 0.96743 1.02323 1.22087 0.96039 0.97496 0.91348 0.96161 0.91737 0.91577 0.91312 0.95060 0.90934 0.90426 0.92872 0.92568 0.91616 0.92474 0.94415 0.90119 0.92184 0.88913 0.94267 0.91742 0.90835 0.91378 0.94986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.59 60.07 0.58 0.85 16 2 N -0.54 -6.96 4.91 -242.94 -1.19 -8.16 16 3 C 0.06 0.78 5.22 -3.82 -0.02 0.76 16 4 C -0.10 -1.64 4.43 -26.68 -0.12 -1.76 16 5 C -0.07 -1.10 0.51 -154.43 -0.08 -1.18 16 6 C -0.10 -1.49 4.13 -26.72 -0.11 -1.60 16 7 C -0.13 -2.14 5.74 -26.61 -0.15 -2.29 16 8 C 0.12 2.38 6.40 -3.72 -0.02 2.36 16 9 N -0.64 -14.41 2.47 -174.26 -0.43 -14.84 16 10 C 0.56 15.87 7.62 -12.99 -0.10 15.77 16 11 O -0.58 -18.80 14.48 5.20 0.08 -18.73 16 12 C -0.54 -15.04 8.88 -35.63 -0.32 -15.36 16 13 H 0.07 1.84 5.66 -52.48 -0.30 1.55 16 14 C 0.09 2.46 5.50 -17.37 -0.10 2.37 16 15 N -0.77 -23.04 11.85 55.55 0.66 -22.39 16 16 Si 0.90 20.14 29.56 -169.99 -5.02 15.11 16 17 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 18 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.26 -5.68 7.11 56.52 0.40 -5.27 16 20 C 0.13 2.50 5.03 -3.60 -0.02 2.48 16 21 C -0.10 -1.35 4.88 -26.69 -0.13 -1.48 16 22 C 0.06 0.69 5.22 -3.83 -0.02 0.67 16 23 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 24 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.93 8.12 -51.93 -0.42 0.51 16 27 H 0.03 0.43 6.55 -51.93 -0.34 0.09 16 28 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.08 1.49 5.92 -51.93 -0.31 1.18 16 30 H 0.05 0.70 4.95 -51.93 -0.26 0.44 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.07 1.13 6.29 -51.93 -0.33 0.80 16 33 H 0.06 0.79 8.14 -51.94 -0.42 0.37 16 34 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 1.80 7.03 -51.93 -0.37 1.44 16 36 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 37 H 0.09 1.86 5.33 -51.93 -0.28 1.58 16 38 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 42 H 0.03 0.37 6.50 -51.93 -0.34 0.04 16 LS Contribution 311.85 15.07 4.70 4.70 Total: -1.00 -32.68 311.85 -8.53 -41.21 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -6.71 Total: 1.50 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -0.61 Total: 1.59 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: -0.97 Total: -45.38 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: 0.08 Total: -18.73 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.68 -8.53 -41.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374110564.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.954 kcal (2) G-P(sol) polarization free energy of solvation -32.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds