Wall clock time and date at job start Mon Mar 30 2020 01:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46847 * 110.99770 * 2 1 4 4 C 1.53057 * 109.50539 * 174.10842 * 3 2 1 5 5 C 1.53050 * 109.27166 * 59.09453 * 4 3 2 6 6 C 1.52969 * 109.53573 * 62.50749 * 5 4 3 7 7 C 1.53060 * 109.52839 * 58.71076 * 6 5 4 8 8 C 1.53184 * 109.30544 * 61.26903 * 7 6 5 9 9 N 1.46921 * 108.92854 * 305.30455 * 8 7 6 10 10 C 1.34782 * 120.63358 * 233.66109 * 9 8 7 11 11 O 1.21688 * 120.00124 * 354.70286 * 10 9 8 12 12 C 1.46368 * 119.99883 * 174.69464 * 10 9 8 13 13 H 1.08005 * 120.00117 * 6.11741 * 12 10 9 14 14 C 1.40049 * 120.00032 * 186.11643 * 12 10 9 15 15 N 1.30673 * 120.00264 * 0.02562 * 14 12 10 16 16 Si 1.86805 * 120.00058 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47375 * 90.00088 * 16 14 12 18 18 H 1.48495 * 109.47321 * 210.00084 * 16 14 12 19 19 H 1.48500 * 109.47109 * 329.99909 * 16 14 12 20 20 C 1.47209 * 118.55838 * 53.53639 * 9 8 7 21 21 C 1.53028 * 109.30494 * 302.45071 * 5 4 3 22 22 C 1.46843 * 110.99960 * 235.76023 * 2 1 3 23 23 H 1.08998 * 109.47143 * 60.00308 * 1 2 3 24 24 H 1.08997 * 109.46951 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47204 * 299.99948 * 1 2 3 26 26 H 1.08996 * 109.46942 * 54.09750 * 3 2 1 27 27 H 1.09001 * 109.46578 * 294.11625 * 3 2 1 28 28 H 1.09001 * 109.50204 * 299.16093 * 4 3 2 29 29 H 1.08998 * 109.53551 * 179.05610 * 4 3 2 30 30 H 1.09005 * 109.46092 * 298.69535 * 6 5 4 31 31 H 1.08995 * 109.46619 * 178.73227 * 6 5 4 32 32 H 1.09004 * 109.49729 * 301.32054 * 7 6 5 33 33 H 1.08989 * 109.49938 * 181.22438 * 7 6 5 34 34 H 1.08997 * 109.57710 * 65.16892 * 8 7 6 35 35 H 1.08996 * 109.57622 * 185.43521 * 8 7 6 36 36 H 0.96995 * 120.00083 * 179.97438 * 15 14 12 37 37 H 1.08993 * 109.54001 * 186.76805 * 20 9 8 38 38 H 1.09003 * 109.68134 * 66.44167 * 20 9 8 39 39 H 1.08999 * 109.50417 * 177.46884 * 21 5 4 40 40 H 1.08993 * 109.50356 * 297.59034 * 21 5 4 41 41 H 1.08997 * 109.46162 * 305.88657 * 22 2 1 42 42 H 1.08999 * 109.46489 * 65.85841 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5182 1.3338 0.1481 5 6 4.1191 0.5346 -1.0107 6 6 3.8031 1.2352 -2.3333 7 6 4.3745 2.6549 -2.3096 8 6 5.8962 2.5858 -2.1480 9 7 6.2131 1.7910 -0.9537 10 6 7.0120 2.2892 0.0107 11 8 7.5557 3.3665 -0.1459 12 6 7.2254 1.5345 1.2465 13 1 6.8243 0.5366 1.3460 14 6 7.9497 2.1063 2.3000 15 7 8.4346 3.3137 2.1799 16 14 8.2228 1.1428 3.8769 17 1 9.4795 0.3594 3.7671 18 1 8.3247 2.0841 5.0209 19 1 7.0811 0.2189 4.0965 20 6 5.6370 0.4416 -0.8331 21 6 3.5183 -0.8727 -1.0198 22 6 1.9953 -0.7713 -1.1333 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.5629 1.9261 0.8324 27 1 1.7334 1.8605 -0.9380 28 1 3.7804 0.8578 1.0930 29 1 3.9109 2.3505 0.1313 30 1 2.7227 1.2808 -2.4711 31 1 4.2506 0.6773 -3.1558 32 1 3.9445 3.2062 -1.4733 33 1 4.1303 3.1610 -3.2435 34 1 6.3358 2.1149 -3.0273 35 1 6.2975 3.5927 -2.0338 36 1 8.9360 3.7098 2.9096 37 1 5.8655 0.0344 0.1517 38 1 6.0560 -0.2065 -1.6029 39 1 3.9102 -1.4302 -1.8704 40 1 3.7808 -1.3865 -0.0950 41 1 1.5630 -1.7719 -1.1236 42 1 1.7331 -0.2716 -2.0658 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374110564.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:52 Heat of formation + Delta-G solvation = -59.777342 kcal Electronic energy + Delta-G solvation = -21969.118388 eV Core-core repulsion = 18947.541231 eV Total energy + Delta-G solvation = -3021.577158 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.44276 -39.26634 -37.24434 -34.75827 -34.02837 -33.07397 -31.73460 -29.24411 -28.50365 -26.19412 -25.49821 -24.21022 -23.20580 -22.44163 -20.68311 -19.04291 -18.33667 -17.78729 -16.94813 -16.16738 -16.12735 -15.77851 -15.66539 -15.34051 -15.20062 -14.98421 -14.57335 -14.23033 -13.64567 -13.54637 -13.25428 -13.23491 -13.07826 -12.98455 -12.75920 -12.65964 -12.32273 -12.16214 -12.04680 -11.96401 -11.90891 -11.68503 -11.27896 -11.00302 -10.92759 -10.90063 -9.74318 -9.18202 -8.95585 -8.27613 -6.80322 1.38642 1.39873 1.54669 2.23896 2.48028 2.88786 3.08054 3.60011 3.73037 3.83870 3.90261 4.16523 4.21481 4.28980 4.32292 4.41462 4.50718 4.59016 4.62049 4.69156 4.72857 4.80890 4.84189 4.92380 4.96245 4.99463 5.02605 5.04294 5.06344 5.17182 5.26622 5.28011 5.36219 5.40679 5.54263 5.62358 5.81876 6.17269 6.19908 6.26976 6.46567 6.90533 7.47054 8.50204 8.69832 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020335 B = 0.006762 C = 0.005690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.597522 B = 4139.858371 C = 4919.500255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.558 5.558 3 C 0.067 3.933 4 C -0.094 4.094 5 C -0.065 4.065 6 C -0.096 4.096 7 C -0.124 4.124 8 C 0.116 3.884 9 N -0.640 5.640 10 C 0.544 3.456 11 O -0.637 6.637 12 C -0.563 4.563 13 H 0.089 0.911 14 C 0.030 3.970 15 N -0.824 5.824 16 Si 0.989 3.011 17 H -0.261 1.261 18 H -0.274 1.274 19 H -0.248 1.248 20 C 0.130 3.870 21 C -0.099 4.099 22 C 0.060 3.940 23 H 0.028 0.972 24 H 0.080 0.920 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.039 0.961 28 H 0.047 0.953 29 H 0.040 0.960 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.046 0.954 33 H 0.086 0.914 34 H 0.057 0.943 35 H 0.043 0.957 36 H 0.272 0.728 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.086 0.914 40 H 0.063 0.937 41 H 0.089 0.911 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.704 -10.284 -6.416 19.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.283 5.283 3 C -0.061 4.061 4 C -0.132 4.132 5 C -0.066 4.066 6 C -0.133 4.133 7 C -0.163 4.163 8 C -0.007 4.007 9 N -0.375 5.375 10 C 0.350 3.650 11 O -0.524 6.524 12 C -0.600 4.600 13 H 0.107 0.893 14 C -0.184 4.184 15 N -0.454 5.454 16 Si 0.808 3.192 17 H -0.186 1.186 18 H -0.199 1.199 19 H -0.172 1.172 20 C 0.007 3.993 21 C -0.138 4.138 22 C -0.067 4.067 23 H 0.047 0.953 24 H 0.098 0.902 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.105 0.895 34 H 0.075 0.925 35 H 0.061 0.939 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.105 0.895 40 H 0.082 0.918 41 H 0.107 0.893 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -15.164 -9.783 -6.022 19.024 hybrid contribution 0.383 0.706 0.108 0.810 sum -14.781 -9.077 -5.913 18.326 Atomic orbital electron populations 1.22375 0.86202 1.02766 1.00766 1.61889 1.08525 1.13458 1.44418 1.21980 0.94454 0.89487 1.00188 1.21423 0.94524 0.99260 0.97995 1.20847 0.94042 0.96388 0.95349 1.21550 1.00797 0.94584 0.96414 1.21880 0.94183 0.98419 1.01791 1.21241 0.95979 0.95640 0.87860 1.48019 1.51748 1.16994 1.20779 1.18582 0.77642 0.85022 0.83706 1.90532 1.54193 1.26350 1.81374 1.21433 1.36689 1.03109 0.98755 0.89266 1.26930 0.92589 0.95361 1.03541 1.70192 1.26978 1.15516 1.32725 0.85147 0.79950 0.78417 0.75646 1.18593 1.19856 1.17157 1.21667 0.92371 0.83449 1.01785 1.21550 0.94768 0.94582 1.02866 1.22127 0.94804 0.98544 0.91256 0.95333 0.90159 0.91531 0.91565 0.94284 0.93452 0.94105 0.90656 0.90726 0.93494 0.89506 0.92480 0.93881 0.91764 0.90866 0.92306 0.89541 0.91819 0.89303 0.93996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 9.59 127.69 1.22 1.69 16 2 N -0.56 -12.72 4.91 -922.51 -4.53 -17.25 16 3 C 0.07 1.75 5.22 86.33 0.45 2.20 16 4 C -0.09 -3.12 4.43 30.63 0.14 -2.99 16 5 C -0.07 -1.88 0.51 -52.13 -0.03 -1.91 16 6 C -0.10 -2.43 4.13 30.60 0.13 -2.31 16 7 C -0.12 -3.83 5.74 30.68 0.18 -3.65 16 8 C 0.12 4.69 6.40 86.36 0.55 5.24 16 9 N -0.64 -29.73 2.47 -823.46 -2.04 -31.76 16 10 C 0.54 32.40 7.62 86.36 0.66 33.06 16 11 O -0.64 -43.98 14.48 -4.31 -0.06 -44.04 16 12 C -0.56 -32.41 8.88 24.83 0.22 -32.19 16 13 H 0.09 4.65 5.66 -2.91 -0.02 4.64 16 14 C 0.03 1.73 5.50 85.30 0.47 2.20 16 15 N -0.82 -51.60 11.85 21.84 0.26 -51.34 16 16 Si 0.99 41.96 29.56 68.60 2.03 43.99 16 17 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 18 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 19 H -0.25 -9.81 7.11 99.48 0.71 -9.11 16 20 C 0.13 4.80 5.03 86.28 0.43 5.23 16 21 C -0.10 -2.25 4.88 30.62 0.15 -2.10 16 22 C 0.06 1.17 5.22 86.33 0.45 1.62 16 23 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 24 H 0.08 1.15 8.09 -2.39 -0.02 1.13 16 25 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.07 1.75 8.12 -2.39 -0.02 1.73 16 27 H 0.04 0.96 6.55 -2.39 -0.02 0.95 16 28 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.04 1.64 5.92 -2.39 -0.01 1.62 16 30 H 0.08 1.65 4.95 -2.38 -0.01 1.64 16 31 H 0.07 1.68 8.14 -2.39 -0.02 1.67 16 32 H 0.05 1.63 6.29 -2.39 -0.02 1.61 16 33 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.04 2.04 7.03 -2.39 -0.02 2.02 16 36 H 0.27 15.49 8.29 -92.71 -0.77 14.73 16 37 H 0.07 2.97 5.33 -2.39 -0.01 2.95 16 38 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.09 1.43 8.08 -2.39 -0.02 1.41 16 42 H 0.04 0.76 6.50 -2.39 -0.02 0.74 16 Total: -1.00 -76.08 311.85 1.68 -74.40 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: 1.00 Total: 19.90 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: 5.02 Total: 6.10 kcal Atomic # 7 Polarization: -94.04 SS G_CDS: -6.31 Total: -100.35 kcal Atomic # 8 Polarization: -43.98 SS G_CDS: -0.06 Total: -44.04 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -76.08 1.68 -74.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374110564.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.624 kcal (2) G-P(sol) polarization free energy of solvation -76.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds