Wall clock time and date at job start Mon Mar 30 2020 01:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34783 * 120.00198 * 2 1 4 4 O 1.21274 * 120.00445 * 179.97438 * 3 2 1 5 5 C 1.50704 * 119.99569 * 0.02562 * 3 2 1 6 6 N 1.46903 * 109.46793 * 179.97438 * 5 3 2 7 7 C 1.46846 * 110.99807 * 66.04542 * 6 5 3 8 8 C 1.53037 * 109.52395 * 174.16000 * 7 6 5 9 9 C 1.53127 * 109.27590 * 59.17726 * 8 7 6 10 10 C 1.53117 * 109.16084 * 302.34445 * 9 8 7 11 11 H 1.08997 * 109.50464 * 297.67966 * 10 9 8 12 12 C 1.50696 * 109.50249 * 177.59707 * 10 9 8 13 13 H 1.08007 * 119.99872 * 245.67304 * 12 10 9 14 14 C 1.37872 * 120.00356 * 65.68115 * 12 10 9 15 15 N 1.31513 * 120.00296 * 198.10999 * 14 12 10 16 16 Si 1.86805 * 119.99826 * 18.10145 * 14 12 10 17 17 H 1.48503 * 109.47067 * 180.02562 * 16 14 12 18 18 H 1.48491 * 109.47135 * 60.00460 * 16 14 12 19 19 H 1.48497 * 109.47041 * 300.00337 * 16 14 12 20 20 C 1.46847 * 110.99990 * 301.83270 * 6 5 3 21 21 C 1.46496 * 119.99978 * 179.97438 * 2 1 3 22 22 C 1.53000 * 117.49859 * 8.62836 * 21 2 1 23 23 C 1.52998 * 117.50157 * 300.00564 * 21 2 1 24 24 H 1.09005 * 109.46472 * 90.00033 * 1 2 3 25 25 H 1.08995 * 109.47067 * 209.99819 * 1 2 3 26 26 H 1.09000 * 109.47175 * 330.00292 * 1 2 3 27 27 H 1.08994 * 109.47596 * 59.99857 * 5 3 2 28 28 H 1.09000 * 109.46870 * 299.99379 * 5 3 2 29 29 H 1.09001 * 109.46668 * 54.14311 * 7 6 5 30 30 H 1.09004 * 109.46393 * 294.16966 * 7 6 5 31 31 H 1.09003 * 109.50460 * 299.24201 * 8 7 6 32 32 H 1.09000 * 109.50925 * 179.11544 * 8 7 6 33 33 H 1.09005 * 109.52061 * 182.44708 * 9 8 7 34 34 H 1.08993 * 109.52156 * 62.25311 * 9 8 7 35 35 H 0.96999 * 119.99781 * 354.61237 * 15 14 12 36 36 H 1.09000 * 109.45992 * 65.82627 * 20 6 5 37 37 H 1.08996 * 109.46126 * 305.85467 * 20 6 5 38 38 H 1.09004 * 115.54537 * 154.33031 * 21 2 1 39 39 H 1.08999 * 117.49835 * 359.97438 * 22 21 2 40 40 H 1.09003 * 117.49641 * 145.01777 * 22 21 2 41 41 H 1.09009 * 117.49820 * 214.97732 * 23 21 2 42 42 H 1.08998 * 117.49494 * 359.97329 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3517 1.1673 0.0005 5 6 1.3854 2.4723 0.0006 6 7 2.3400 3.5889 0.0011 7 6 3.1051 3.6277 -1.2518 8 6 3.9814 4.8820 -1.2773 9 6 4.9323 4.8588 -0.0772 10 6 4.1118 4.7696 1.2125 11 1 3.4824 5.6546 1.3054 12 6 5.0415 4.6868 2.3955 13 1 5.0710 3.7905 2.9975 14 6 5.8544 5.7551 2.7097 15 7 6.8986 5.5799 3.4897 16 14 5.4727 7.4516 2.0270 17 1 6.4903 8.4197 2.5093 18 1 4.1264 7.8783 2.4856 19 1 5.4985 7.4052 0.5430 20 6 3.2316 3.5185 1.1658 21 6 2.1975 -1.2687 0.0006 22 6 1.3887 -2.5515 -0.2025 23 6 1.9630 -2.2193 1.1762 24 1 -0.3632 0.0000 -1.0278 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 0.7591 2.5299 0.8907 28 1 0.7585 2.5303 -0.8892 29 1 2.4171 3.6481 -2.0970 30 1 3.7368 2.7420 -1.3191 31 1 3.3496 5.7686 -1.2237 32 1 4.5609 4.9025 -2.2002 33 1 5.5284 5.7714 -0.0671 34 1 5.5906 3.9933 -0.1508 35 1 7.0531 4.7180 3.9070 36 1 3.8627 2.6332 1.0870 37 1 2.6355 3.4596 2.0764 38 1 3.2002 -1.2328 -0.4255 39 1 0.3115 -2.4514 -0.3360 40 1 1.8592 -3.3598 -0.7623 41 1 2.8114 -2.8092 1.5234 42 1 1.2641 -1.9006 1.9494 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397820682.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:47 Heat of formation + Delta-G solvation = 3.501407 kcal Electronic energy + Delta-G solvation = -21265.292846 eV Core-core repulsion = 18246.459660 eV Total energy + Delta-G solvation = -3018.833185 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.39318 -38.32438 -36.80229 -34.07318 -33.50076 -31.91113 -30.02837 -27.34309 -27.18218 -24.47944 -23.12102 -22.60673 -21.59370 -20.81854 -19.20424 -18.70362 -17.42817 -17.29121 -16.47441 -15.73966 -15.17719 -14.69965 -14.39247 -14.12386 -13.70849 -13.43239 -13.29373 -12.90472 -12.67856 -12.38045 -12.23360 -12.14344 -11.83058 -11.71587 -11.52476 -11.19389 -10.98679 -10.75305 -10.49129 -10.31716 -10.13460 -9.92284 -9.73951 -9.45532 -9.16456 -8.61337 -8.55486 -8.03796 -7.58626 -6.32317 -3.90816 2.61493 2.80339 3.49652 3.53571 3.63738 3.72235 4.36981 4.47625 4.61595 4.63388 4.70869 4.74334 4.89982 5.09936 5.28728 5.30431 5.39046 5.39217 5.49651 5.58854 5.63760 5.75219 5.79994 5.81366 6.00157 6.24556 6.39671 6.43078 6.46234 6.57229 6.73983 6.92478 6.99410 7.08894 7.26952 7.43767 7.57916 7.64627 7.81072 8.25688 8.37904 8.51479 9.05420 9.76810 11.07876 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.029350 B = 0.004971 C = 0.004591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.774875 B = 5630.910553 C = 6097.932784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.597 5.597 3 C 0.480 3.520 4 O -0.516 6.516 5 C 0.039 3.961 6 N -0.517 5.517 7 C 0.050 3.950 8 C -0.117 4.117 9 C -0.122 4.122 10 C 0.030 3.970 11 H 0.023 0.977 12 C -0.593 4.593 13 H 0.052 0.948 14 C 0.029 3.971 15 N -0.912 5.912 16 Si 1.049 2.951 17 H -0.289 1.289 18 H -0.284 1.284 19 H -0.273 1.273 20 C 0.056 3.944 21 C 0.082 3.918 22 C -0.188 4.188 23 C -0.194 4.194 24 H 0.058 0.942 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.101 0.899 28 H 0.097 0.903 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.265 0.735 36 H 0.066 0.934 37 H 0.053 0.947 38 H 0.131 0.869 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.622 -12.487 -9.850 22.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.332 5.332 3 C 0.268 3.732 4 O -0.391 6.391 5 C -0.093 4.093 6 N -0.239 5.239 7 C -0.077 4.077 8 C -0.155 4.155 9 C -0.160 4.160 10 C 0.010 3.990 11 H 0.042 0.958 12 C -0.632 4.632 13 H 0.070 0.930 14 C -0.175 4.175 15 N -0.547 5.547 16 Si 0.878 3.122 17 H -0.216 1.216 18 H -0.211 1.211 19 H -0.200 1.200 20 C -0.071 4.071 21 C -0.023 4.023 22 C -0.226 4.226 23 C -0.232 4.232 24 H 0.076 0.924 25 H 0.089 0.911 26 H 0.095 0.905 27 H 0.119 0.881 28 H 0.115 0.885 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.148 0.852 39 H 0.117 0.883 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -14.649 -10.422 -9.882 20.515 hybrid contribution -0.325 -2.615 0.144 2.639 sum -14.974 -13.037 -9.737 22.113 Atomic orbital electron populations 1.21813 0.79727 1.03360 1.01942 1.47692 1.06475 1.04941 1.74113 1.22674 0.88991 0.85938 0.75562 1.90686 1.14029 1.86555 1.47781 1.22405 0.96872 0.85992 1.04020 1.62545 1.19939 1.36829 1.04611 1.22163 0.95922 0.99123 0.90537 1.21640 0.97871 0.97080 0.98898 1.22077 0.97792 1.01393 0.94741 1.18953 0.93196 0.93098 0.93704 0.95848 1.21958 1.25061 1.02787 1.13366 0.93013 1.25754 0.91912 1.03351 0.96471 1.70860 1.23560 1.28077 1.32196 0.83992 0.75914 0.75677 0.76608 1.21563 1.21062 1.19952 1.22472 0.94113 1.01298 0.89177 1.21602 0.97498 0.80592 1.02592 1.23362 1.00290 0.98617 1.00304 1.23373 1.03933 1.03817 0.92104 0.92387 0.91124 0.90476 0.88121 0.88505 0.92726 0.92937 0.92240 0.93027 0.92316 0.93133 0.92475 0.91634 0.92842 0.85167 0.88318 0.88032 0.88104 0.88634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.57 9.49 59.85 0.57 1.14 16 2 N -0.60 -7.15 3.21 -173.93 -0.56 -7.71 16 3 C 0.48 7.47 7.09 -10.98 -0.08 7.39 16 4 O -0.52 -10.38 11.33 5.56 0.06 -10.31 16 5 C 0.04 0.55 4.41 -4.97 -0.02 0.53 16 6 N -0.52 -9.56 4.86 -236.11 -1.15 -10.71 16 7 C 0.05 0.91 5.09 -3.83 -0.02 0.89 16 8 C -0.12 -2.26 6.09 -26.65 -0.16 -2.42 16 9 C -0.12 -2.89 4.97 -26.61 -0.13 -3.02 16 10 C 0.03 0.76 1.84 -91.69 -0.17 0.59 16 11 H 0.02 0.60 6.79 -51.93 -0.35 0.25 16 12 C -0.59 -17.59 8.82 -34.44 -0.30 -17.90 16 13 H 0.05 1.66 7.99 -52.48 -0.42 1.24 16 14 C 0.03 0.88 5.34 -17.82 -0.10 0.78 16 15 N -0.91 -29.15 13.69 55.43 0.76 -28.39 16 16 Si 1.05 26.40 26.41 -169.99 -4.49 21.91 16 17 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.27 -6.38 5.57 56.52 0.32 -6.06 16 20 C 0.06 1.26 4.20 -3.83 -0.02 1.24 16 21 C 0.08 0.95 6.21 -67.93 -0.42 0.52 16 22 C -0.19 -1.51 9.72 -26.73 -0.26 -1.77 16 23 C -0.19 -1.87 10.13 -26.73 -0.27 -2.14 16 24 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.07 0.44 6.33 -51.93 -0.33 0.11 16 26 H 0.08 0.52 6.44 -51.93 -0.33 0.18 16 27 H 0.10 1.25 7.40 -51.93 -0.38 0.86 16 28 H 0.10 1.08 8.03 -51.93 -0.42 0.66 16 29 H 0.05 0.83 8.06 -51.93 -0.42 0.41 16 30 H 0.05 1.05 6.00 -51.93 -0.31 0.74 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 1.43 4.86 -51.93 -0.25 1.18 16 34 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.27 8.48 8.73 -40.82 -0.36 8.12 16 36 H 0.07 1.64 5.36 -51.93 -0.28 1.36 16 37 H 0.05 1.21 8.12 -51.93 -0.42 0.78 16 38 H 0.13 1.73 7.67 -51.93 -0.40 1.33 16 39 H 0.10 0.66 6.46 -51.93 -0.34 0.33 16 40 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.10 0.93 8.14 -51.92 -0.42 0.51 16 42 H 0.10 0.91 8.12 -51.93 -0.42 0.49 16 LS Contribution 317.92 15.07 4.79 4.79 Total: -1.00 -34.36 317.92 -8.82 -43.18 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -6.85 Total: 1.40 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -1.38 Total: -14.17 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: -0.95 Total: -46.80 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.06 Total: -10.31 kcal Atomic # 14 Polarization: 26.40 SS G_CDS: -4.49 Total: 21.91 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.36 -8.82 -43.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397820682.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.679 kcal (2) G-P(sol) polarization free energy of solvation -34.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds