Wall clock time and date at job start Mon Mar 30 2020 01:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34783 * 120.00198 * 2 1 4 4 O 1.21274 * 120.00445 * 179.97438 * 3 2 1 5 5 C 1.50704 * 119.99569 * 0.02562 * 3 2 1 6 6 N 1.46903 * 109.46793 * 179.97438 * 5 3 2 7 7 C 1.46846 * 110.99807 * 66.04542 * 6 5 3 8 8 C 1.53037 * 109.52395 * 174.16000 * 7 6 5 9 9 C 1.53127 * 109.27590 * 59.17726 * 8 7 6 10 10 C 1.53117 * 109.16084 * 302.34445 * 9 8 7 11 11 H 1.08997 * 109.50464 * 297.67966 * 10 9 8 12 12 C 1.50696 * 109.50249 * 177.59707 * 10 9 8 13 13 H 1.08007 * 119.99872 * 245.67304 * 12 10 9 14 14 C 1.37872 * 120.00356 * 65.68115 * 12 10 9 15 15 N 1.31513 * 120.00296 * 198.10999 * 14 12 10 16 16 Si 1.86805 * 119.99826 * 18.10145 * 14 12 10 17 17 H 1.48503 * 109.47067 * 180.02562 * 16 14 12 18 18 H 1.48491 * 109.47135 * 60.00460 * 16 14 12 19 19 H 1.48497 * 109.47041 * 300.00337 * 16 14 12 20 20 C 1.46847 * 110.99990 * 301.83270 * 6 5 3 21 21 C 1.46496 * 119.99978 * 179.97438 * 2 1 3 22 22 C 1.53000 * 117.49859 * 8.62836 * 21 2 1 23 23 C 1.52998 * 117.50157 * 300.00564 * 21 2 1 24 24 H 1.09005 * 109.46472 * 90.00033 * 1 2 3 25 25 H 1.08995 * 109.47067 * 209.99819 * 1 2 3 26 26 H 1.09000 * 109.47175 * 330.00292 * 1 2 3 27 27 H 1.08994 * 109.47596 * 59.99857 * 5 3 2 28 28 H 1.09000 * 109.46870 * 299.99379 * 5 3 2 29 29 H 1.09001 * 109.46668 * 54.14311 * 7 6 5 30 30 H 1.09004 * 109.46393 * 294.16966 * 7 6 5 31 31 H 1.09003 * 109.50460 * 299.24201 * 8 7 6 32 32 H 1.09000 * 109.50925 * 179.11544 * 8 7 6 33 33 H 1.09005 * 109.52061 * 182.44708 * 9 8 7 34 34 H 1.08993 * 109.52156 * 62.25311 * 9 8 7 35 35 H 0.96999 * 119.99781 * 354.61237 * 15 14 12 36 36 H 1.09000 * 109.45992 * 65.82627 * 20 6 5 37 37 H 1.08996 * 109.46126 * 305.85467 * 20 6 5 38 38 H 1.09004 * 115.54537 * 154.33031 * 21 2 1 39 39 H 1.08999 * 117.49835 * 359.97438 * 22 21 2 40 40 H 1.09003 * 117.49641 * 145.01777 * 22 21 2 41 41 H 1.09009 * 117.49820 * 214.97732 * 23 21 2 42 42 H 1.08998 * 117.49494 * 359.97329 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3517 1.1673 0.0005 5 6 1.3854 2.4723 0.0006 6 7 2.3400 3.5889 0.0011 7 6 3.1051 3.6277 -1.2518 8 6 3.9814 4.8820 -1.2773 9 6 4.9323 4.8588 -0.0772 10 6 4.1118 4.7696 1.2125 11 1 3.4824 5.6546 1.3054 12 6 5.0415 4.6868 2.3955 13 1 5.0710 3.7905 2.9975 14 6 5.8544 5.7551 2.7097 15 7 6.8986 5.5799 3.4897 16 14 5.4727 7.4516 2.0270 17 1 6.4903 8.4197 2.5093 18 1 4.1264 7.8783 2.4856 19 1 5.4985 7.4052 0.5430 20 6 3.2316 3.5185 1.1658 21 6 2.1975 -1.2687 0.0006 22 6 1.3887 -2.5515 -0.2025 23 6 1.9630 -2.2193 1.1762 24 1 -0.3632 0.0000 -1.0278 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 0.7591 2.5299 0.8907 28 1 0.7585 2.5303 -0.8892 29 1 2.4171 3.6481 -2.0970 30 1 3.7368 2.7420 -1.3191 31 1 3.3496 5.7686 -1.2237 32 1 4.5609 4.9025 -2.2002 33 1 5.5284 5.7714 -0.0671 34 1 5.5906 3.9933 -0.1508 35 1 7.0531 4.7180 3.9070 36 1 3.8627 2.6332 1.0870 37 1 2.6355 3.4596 2.0764 38 1 3.2002 -1.2328 -0.4255 39 1 0.3115 -2.4514 -0.3360 40 1 1.8592 -3.3598 -0.7623 41 1 2.8114 -2.8092 1.5234 42 1 1.2641 -1.9006 1.9494 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397820682.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:47 Heat of formation + Delta-G solvation = -21.713574 kcal Electronic energy + Delta-G solvation = -21266.386249 eV Core-core repulsion = 18246.459660 eV Total energy + Delta-G solvation = -3019.926589 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.57144 -39.57430 -38.06798 -35.53983 -34.91262 -33.74097 -31.88566 -28.63770 -27.93713 -26.54436 -24.54738 -23.34935 -22.96462 -22.41202 -20.56563 -20.12169 -19.60811 -18.41041 -17.54174 -16.79095 -16.63563 -15.99658 -15.76569 -15.59203 -15.19207 -15.10095 -14.47273 -14.32913 -13.99921 -13.86490 -13.64874 -13.34156 -13.19128 -13.10278 -12.59874 -12.39231 -12.32757 -12.20062 -11.96158 -11.71848 -11.61759 -11.57812 -11.37483 -11.34052 -11.05544 -10.70983 -10.34150 -9.47592 -9.07984 -8.75936 -6.35478 1.46284 1.49748 1.55146 1.75429 1.90306 2.50884 2.85851 2.98116 3.07479 3.62071 3.72026 3.96475 3.98490 4.06767 4.09390 4.19745 4.25674 4.40540 4.48162 4.58575 4.60690 4.67303 4.69193 4.78501 4.84847 4.89022 4.93499 4.99846 5.01874 5.11832 5.12738 5.22341 5.31530 5.48987 5.59690 5.77712 5.85821 6.02386 6.08528 6.29075 6.36957 6.57571 7.15887 7.42374 8.62713 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.029350 B = 0.004971 C = 0.004591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.774875 B = 5630.910553 C = 6097.932784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.590 5.590 3 C 0.471 3.529 4 O -0.576 6.576 5 C 0.040 3.960 6 N -0.515 5.515 7 C 0.052 3.948 8 C -0.112 4.112 9 C -0.119 4.119 10 C 0.028 3.972 11 H 0.031 0.969 12 C -0.602 4.602 13 H 0.004 0.996 14 C -0.023 4.023 15 N -0.942 5.942 16 Si 1.090 2.910 17 H -0.290 1.290 18 H -0.261 1.261 19 H -0.241 1.241 20 C 0.071 3.929 21 C 0.044 3.956 22 C -0.149 4.149 23 C -0.197 4.197 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.120 0.880 28 H 0.140 0.860 29 H 0.097 0.903 30 H 0.027 0.973 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.051 0.949 34 H 0.019 0.981 35 H 0.247 0.753 36 H 0.034 0.966 37 H 0.044 0.956 38 H 0.099 0.901 39 H 0.123 0.877 40 H 0.115 0.885 41 H 0.098 0.902 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.415 -12.100 -12.381 26.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.322 5.322 3 C 0.260 3.740 4 O -0.456 6.456 5 C -0.091 4.091 6 N -0.237 5.237 7 C -0.076 4.076 8 C -0.149 4.149 9 C -0.157 4.157 10 C 0.008 3.992 11 H 0.049 0.951 12 C -0.640 4.640 13 H 0.022 0.978 14 C -0.219 4.219 15 N -0.578 5.578 16 Si 0.911 3.089 17 H -0.216 1.216 18 H -0.186 1.186 19 H -0.165 1.165 20 C -0.056 4.056 21 C -0.061 4.061 22 C -0.187 4.187 23 C -0.236 4.236 24 H 0.099 0.901 25 H 0.106 0.894 26 H 0.108 0.892 27 H 0.138 0.862 28 H 0.158 0.842 29 H 0.115 0.885 30 H 0.046 0.954 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.069 0.931 34 H 0.038 0.962 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.063 0.937 38 H 0.117 0.883 39 H 0.141 0.859 40 H 0.133 0.867 41 H 0.116 0.884 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -18.516 -10.105 -12.426 24.482 hybrid contribution 0.821 -2.941 0.988 3.210 sum -17.695 -13.046 -11.438 24.782 Atomic orbital electron populations 1.22179 0.76642 1.04980 1.03912 1.47689 1.08302 1.04036 1.72179 1.22881 0.88378 0.87503 0.75243 1.90679 1.16555 1.87452 1.50933 1.22612 0.95781 0.83747 1.06992 1.62452 1.18885 1.39293 1.03084 1.22189 0.96421 0.97378 0.91564 1.21616 0.97438 0.98414 0.97449 1.21931 0.98071 0.99511 0.96189 1.18910 0.93065 0.94647 0.92553 0.95137 1.22216 1.26278 1.00961 1.14556 0.97797 1.27370 0.90977 1.07553 0.96024 1.71002 1.25571 1.27064 1.34161 0.83521 0.76767 0.70572 0.78075 1.21606 1.18560 1.16535 1.22036 0.94024 0.98500 0.91089 1.21610 0.97521 0.81885 1.05051 1.23461 1.01137 0.95947 0.98135 1.23413 1.04271 1.03110 0.92786 0.90096 0.89375 0.89177 0.86201 0.84237 0.88475 0.95428 0.90617 0.90552 0.93096 0.96237 0.94419 0.94796 0.93710 0.88312 0.85927 0.86691 0.88367 0.88273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.73 9.49 127.77 1.21 1.94 16 2 N -0.59 -13.21 3.21 -822.59 -2.64 -15.85 16 3 C 0.47 14.40 7.09 87.66 0.62 15.02 16 4 O -0.58 -24.37 11.33 -3.01 -0.03 -24.41 16 5 C 0.04 1.01 4.41 85.56 0.38 1.39 16 6 N -0.52 -18.06 4.86 -900.92 -4.38 -22.43 16 7 C 0.05 1.76 5.09 86.33 0.44 2.20 16 8 C -0.11 -4.00 6.09 30.65 0.19 -3.81 16 9 C -0.12 -5.63 4.97 30.68 0.15 -5.48 16 10 C 0.03 1.42 1.84 -11.49 -0.02 1.40 16 11 H 0.03 1.53 6.79 -2.39 -0.02 1.52 16 12 C -0.60 -37.48 8.82 25.60 0.23 -37.25 16 13 H 0.00 0.25 7.99 -2.91 -0.02 0.23 16 14 C -0.02 -1.40 5.34 84.65 0.45 -0.95 16 15 N -0.94 -62.86 13.69 21.45 0.29 -62.57 16 16 Si 1.09 52.74 26.41 68.60 1.81 54.55 16 17 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 18 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 19 H -0.24 -10.38 5.57 99.48 0.55 -9.83 16 20 C 0.07 3.29 4.20 86.33 0.36 3.65 16 21 C 0.04 1.01 6.21 44.99 0.28 1.29 16 22 C -0.15 -2.01 9.72 30.59 0.30 -1.71 16 23 C -0.20 -3.63 10.13 30.59 0.31 -3.32 16 24 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 25 H 0.09 0.72 6.33 -2.39 -0.02 0.71 16 26 H 0.09 0.82 6.44 -2.39 -0.02 0.81 16 27 H 0.12 2.58 7.40 -2.39 -0.02 2.56 16 28 H 0.14 2.37 8.03 -2.39 -0.02 2.35 16 29 H 0.10 2.50 8.06 -2.39 -0.02 2.48 16 30 H 0.03 1.10 6.00 -2.39 -0.01 1.08 16 31 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.05 2.43 4.86 -2.38 -0.01 2.42 16 34 H 0.02 0.99 8.14 -2.39 -0.02 0.98 16 35 H 0.25 16.88 8.73 -92.71 -0.81 16.07 16 36 H 0.03 1.81 5.36 -2.39 -0.01 1.79 16 37 H 0.04 2.08 8.12 -2.39 -0.02 2.06 16 38 H 0.10 2.84 7.67 -2.38 -0.02 2.82 16 39 H 0.12 1.09 6.46 -2.39 -0.02 1.08 16 40 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.10 1.82 8.14 -2.38 -0.02 1.80 16 42 H 0.10 1.75 8.12 -2.39 -0.02 1.73 16 Total: -1.00 -81.96 317.92 0.75 -81.21 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: 0.81 Total: 15.15 kcal Atomic # 6 Polarization: -30.55 SS G_CDS: 4.90 Total: -25.65 kcal Atomic # 7 Polarization: -94.13 SS G_CDS: -6.72 Total: -100.85 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: -0.03 Total: -24.41 kcal Atomic # 14 Polarization: 52.74 SS G_CDS: 1.81 Total: 54.55 kcal Total: -81.96 0.75 -81.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397820682.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.497 kcal (2) G-P(sol) polarization free energy of solvation -81.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds