Wall clock time and date at job start Mon Mar 30 2020 01:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34777 * 119.99790 * 2 1 4 4 O 1.21593 * 119.99815 * 184.93231 * 3 2 1 5 5 N 1.34778 * 120.00413 * 4.93275 * 3 2 1 6 6 C 1.46494 * 120.00127 * 185.01832 * 5 3 2 7 7 C 1.53002 * 109.47231 * 185.00027 * 6 5 3 8 8 C 1.50701 * 115.54904 * 54.72784 * 7 6 5 9 9 H 1.08004 * 119.99654 * 220.02028 * 8 7 6 10 10 C 1.37873 * 120.00156 * 39.74854 * 8 7 6 11 11 N 1.31517 * 119.99749 * 355.48632 * 10 8 7 12 12 Si 1.86803 * 120.00099 * 175.48311 * 10 8 7 13 13 H 1.48503 * 109.46908 * 90.00121 * 12 10 8 14 14 H 1.48495 * 109.46941 * 210.00034 * 12 10 8 15 15 H 1.48499 * 109.47080 * 330.00078 * 12 10 8 16 16 C 1.52992 * 117.51669 * 200.43381 * 7 6 5 17 17 C 1.52998 * 60.00216 * 107.47621 * 16 7 6 18 18 C 1.46493 * 119.99750 * 179.97438 * 2 1 3 19 19 C 1.54265 * 110.03450 * 57.90845 * 18 2 1 20 20 C 1.54954 * 104.16375 * 217.13293 * 19 18 2 21 21 C 1.54891 * 102.77697 * 37.88583 * 20 19 18 22 22 C 1.53873 * 110.03572 * 300.68871 * 18 2 1 23 23 H 1.08998 * 109.47283 * 94.70371 * 1 2 3 24 24 H 1.09000 * 109.47344 * 214.70730 * 1 2 3 25 25 H 1.09006 * 109.46969 * 334.69917 * 1 2 3 26 26 H 0.96996 * 119.99458 * 5.01106 * 5 3 2 27 27 H 1.08994 * 109.47505 * 64.99160 * 6 5 3 28 28 H 1.09000 * 109.46882 * 304.99537 * 6 5 3 29 29 H 0.96997 * 119.99686 * 185.00053 * 11 10 8 30 30 H 1.09005 * 117.49733 * 214.96647 * 16 7 6 31 31 H 1.09000 * 117.50300 * 359.97438 * 16 7 6 32 32 H 1.08996 * 117.49946 * 252.50864 * 17 16 7 33 33 H 1.09008 * 117.51812 * 107.47888 * 17 16 7 34 34 H 1.09004 * 110.01584 * 179.29941 * 18 2 1 35 35 H 1.09001 * 110.48404 * 335.78439 * 19 18 2 36 36 H 1.09007 * 110.48374 * 98.41905 * 19 18 2 37 37 H 1.09002 * 110.72500 * 279.57771 * 20 19 18 38 38 H 1.09005 * 110.92642 * 156.29154 * 20 19 18 39 39 H 1.08998 * 110.49002 * 203.40172 * 21 20 19 40 40 H 1.09008 * 110.59670 * 80.81631 * 21 20 19 41 41 H 1.08999 * 110.03810 * 238.56815 * 22 18 2 42 42 H 1.09004 * 110.03088 * 0.02562 * 22 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3514 1.1692 -0.0905 5 7 1.4688 2.3323 0.1004 6 6 2.1888 3.6033 -0.0100 7 6 1.2255 4.7605 0.2620 8 6 0.4808 4.6925 1.5704 9 1 -0.5598 4.9782 1.6149 10 6 1.1264 4.2602 2.7093 11 7 2.3649 3.8234 2.6376 12 14 0.2422 4.2951 4.3545 13 1 -0.4634 3.0055 4.5646 14 1 1.2305 4.5018 5.4433 15 1 -0.7435 5.4058 4.3632 16 6 1.6202 6.1452 -0.2552 17 6 0.4933 5.3667 -0.9370 18 6 2.1974 -1.2687 0.0006 19 6 1.7948 -2.1119 -1.2269 20 6 1.7818 -3.5685 -0.6985 21 6 1.2034 -3.4098 0.7295 22 6 1.8220 -2.0936 1.2441 23 1 -0.3634 -0.0843 -1.0242 24 1 -0.3634 -0.8448 0.5851 25 1 -0.3633 0.9291 0.4392 26 1 0.5097 2.3291 0.2456 27 1 2.6006 3.7016 -1.0144 28 1 2.9991 3.6263 0.7187 29 1 2.7944 3.4519 3.4239 30 1 1.3413 7.0071 0.3510 31 1 2.5666 6.2322 -0.7889 32 1 0.6982 4.9414 -1.9194 33 1 -0.5271 5.7161 -0.7794 34 1 3.2709 -1.0798 -0.0120 35 1 0.8038 -1.8249 -1.5784 36 1 2.5302 -2.0008 -2.0238 37 1 2.7926 -3.9749 -0.6628 38 1 1.1351 -4.1985 -1.3094 39 1 1.5072 -4.2459 1.3593 40 1 0.1165 -3.3332 0.6967 41 1 2.7133 -2.3058 1.8345 42 1 1.0945 -1.5501 1.8470 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407973103.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:00 Heat of formation + Delta-G solvation = -6.240738 kcal Electronic energy + Delta-G solvation = -21283.310918 eV Core-core repulsion = 18264.055282 eV Total energy + Delta-G solvation = -3019.255636 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.71961 -37.72801 -36.53728 -34.05322 -32.77078 -32.11446 -28.67083 -28.11690 -26.44910 -25.62503 -24.70756 -21.24485 -20.66001 -20.37914 -19.24816 -18.59115 -17.69011 -16.18729 -16.04209 -15.33910 -14.91631 -14.69002 -14.35745 -13.89649 -13.52951 -13.20186 -13.04067 -12.74313 -12.48309 -11.90112 -11.73947 -11.66249 -11.47737 -11.30930 -11.10239 -11.06263 -11.05546 -10.70855 -10.61424 -10.49894 -10.44745 -10.21529 -9.66895 -9.18384 -8.93556 -8.77391 -8.27483 -8.19142 -7.61127 -5.95253 -4.15190 3.22093 3.32005 3.33802 3.36499 4.08563 4.32186 4.61413 4.70397 4.80988 4.93427 5.11933 5.38913 5.47858 5.50175 5.56949 5.59336 5.61900 5.64736 5.75604 5.83945 5.88747 5.97832 6.06586 6.08454 6.28291 6.33443 6.35713 6.41468 6.58735 6.64061 6.77579 6.91180 7.01101 7.18877 7.29421 7.60163 7.71716 7.83500 8.05459 8.35924 8.81056 8.99452 9.48565 9.56061 10.95132 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020838 B = 0.005917 C = 0.005129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.374168 B = 4731.126750 C = 5457.525904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.635 5.635 3 C 0.702 3.298 4 O -0.605 6.605 5 N -0.703 5.703 6 C 0.177 3.823 7 C 0.037 3.963 8 C -0.499 4.499 9 H 0.059 0.941 10 C 0.075 3.925 11 N -0.863 5.863 12 Si 0.892 3.108 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.274 1.274 16 C -0.196 4.196 17 C -0.212 4.212 18 C 0.157 3.843 19 C -0.134 4.134 20 C -0.123 4.123 21 C -0.122 4.122 22 C -0.139 4.139 23 H 0.047 0.953 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.393 0.607 27 H 0.014 0.986 28 H 0.115 0.885 29 H 0.262 0.738 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.255 -11.979 -4.750 13.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.373 5.373 3 C 0.403 3.597 4 O -0.485 6.485 5 N -0.355 5.355 6 C 0.054 3.946 7 C 0.036 3.964 8 C -0.536 4.536 9 H 0.077 0.923 10 C -0.129 4.129 11 N -0.498 5.498 12 Si 0.720 3.280 13 H -0.208 1.208 14 H -0.211 1.211 15 H -0.199 1.199 16 C -0.234 4.234 17 C -0.249 4.249 18 C 0.052 3.948 19 C -0.173 4.173 20 C -0.161 4.161 21 C -0.160 4.160 22 C -0.177 4.177 23 H 0.066 0.934 24 H 0.082 0.918 25 H 0.091 0.909 26 H 0.229 0.771 27 H 0.032 0.968 28 H 0.132 0.868 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.119 0.881 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.181 -11.915 -4.682 13.192 hybrid contribution -1.058 0.113 1.007 1.466 sum -4.239 -11.802 -3.675 13.068 Atomic orbital electron populations 1.21575 0.80934 1.02744 1.00848 1.47045 1.05630 1.04782 1.79890 1.15916 0.85228 0.80434 0.78072 1.90814 1.12131 1.86214 1.59301 1.44986 1.11245 1.04286 1.74989 1.20951 0.96118 0.79675 0.97878 1.19226 0.95743 0.89541 0.91846 1.20441 0.96457 1.45979 0.90736 0.92252 1.24990 0.94610 0.94551 0.98792 1.69841 1.11570 1.38904 1.29517 0.86596 0.79367 0.78333 0.83749 1.20761 1.21140 1.19867 1.22904 0.96947 0.98722 1.04875 1.22924 0.96309 1.08366 0.97291 1.21452 0.98058 0.82029 0.93279 1.22748 1.02056 0.94511 0.97954 1.22460 1.00973 0.96454 0.96167 1.22343 1.00020 0.97303 0.96339 1.22577 1.01314 0.95781 0.98052 0.93439 0.91755 0.90947 0.77145 0.96777 0.86775 0.92718 0.90235 0.91484 0.91412 0.90690 0.88095 0.91144 0.91442 0.91461 0.91716 0.91880 0.91811 0.91334 0.91038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.14 9.24 59.85 0.55 1.69 16 2 N -0.64 -10.96 2.75 -178.38 -0.49 -11.45 16 3 C 0.70 15.51 8.27 -86.92 -0.72 14.80 16 4 O -0.60 -15.57 15.68 5.28 0.08 -15.49 16 5 N -0.70 -15.62 5.24 -65.23 -0.34 -15.96 16 6 C 0.18 4.34 4.71 -4.04 -0.02 4.32 16 7 C 0.04 0.89 1.97 -155.66 -0.31 0.58 16 8 C -0.50 -12.78 8.41 -34.44 -0.29 -13.07 16 9 H 0.06 1.51 7.82 -52.48 -0.41 1.10 16 10 C 0.08 1.96 5.39 -17.82 -0.10 1.87 16 11 N -0.86 -23.66 10.48 55.43 0.58 -23.08 16 12 Si 0.89 20.41 29.54 -169.99 -5.02 15.38 16 13 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 14 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 15 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 16 C -0.20 -4.35 9.95 -26.74 -0.27 -4.62 16 17 C -0.21 -4.43 9.92 -26.73 -0.27 -4.70 16 18 C 0.16 2.36 3.30 -66.82 -0.22 2.14 16 19 C -0.13 -1.61 6.43 -25.04 -0.16 -1.77 16 20 C -0.12 -1.19 6.91 -24.70 -0.17 -1.36 16 21 C -0.12 -1.22 6.83 -25.07 -0.17 -1.39 16 22 C -0.14 -1.78 6.02 -25.61 -0.15 -1.94 16 23 H 0.05 0.58 7.68 -51.93 -0.40 0.18 16 24 H 0.06 0.76 6.81 -51.93 -0.35 0.40 16 25 H 0.07 1.06 5.92 -51.93 -0.31 0.75 16 26 H 0.39 8.19 5.70 -40.82 -0.23 7.96 16 27 H 0.01 0.34 8.09 -51.93 -0.42 -0.08 16 28 H 0.11 3.21 5.86 -51.93 -0.30 2.90 16 29 H 0.26 7.08 8.32 -40.82 -0.34 6.74 16 30 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 31 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 33 H 0.07 1.52 8.14 -51.92 -0.42 1.10 16 34 H 0.10 1.78 6.95 -51.93 -0.36 1.42 16 35 H 0.07 0.82 6.76 -51.93 -0.35 0.47 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.07 0.99 6.89 -51.93 -0.36 0.63 16 LS Contribution 330.58 15.07 4.98 4.98 Total: -1.00 -29.41 330.58 -9.36 -38.77 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -6.86 Total: 10.30 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -2.29 Total: -3.45 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: -0.25 Total: -50.49 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: 0.08 Total: -15.49 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.41 -9.36 -38.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407973103.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.527 kcal (2) G-P(sol) polarization free energy of solvation -29.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds