Wall clock time and date at job start Mon Mar 30 2020 01:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34777 * 119.99790 * 2 1 4 4 O 1.21593 * 119.99815 * 184.93231 * 3 2 1 5 5 N 1.34778 * 120.00413 * 4.93275 * 3 2 1 6 6 C 1.46494 * 120.00127 * 185.01832 * 5 3 2 7 7 C 1.53002 * 109.47231 * 185.00027 * 6 5 3 8 8 C 1.50701 * 115.54904 * 54.72784 * 7 6 5 9 9 H 1.08004 * 119.99654 * 220.02028 * 8 7 6 10 10 C 1.37873 * 120.00156 * 39.74854 * 8 7 6 11 11 N 1.31517 * 119.99749 * 355.48632 * 10 8 7 12 12 Si 1.86803 * 120.00099 * 175.48311 * 10 8 7 13 13 H 1.48503 * 109.46908 * 90.00121 * 12 10 8 14 14 H 1.48495 * 109.46941 * 210.00034 * 12 10 8 15 15 H 1.48499 * 109.47080 * 330.00078 * 12 10 8 16 16 C 1.52992 * 117.51669 * 200.43381 * 7 6 5 17 17 C 1.52998 * 60.00216 * 107.47621 * 16 7 6 18 18 C 1.46493 * 119.99750 * 179.97438 * 2 1 3 19 19 C 1.54265 * 110.03450 * 57.90845 * 18 2 1 20 20 C 1.54954 * 104.16375 * 217.13293 * 19 18 2 21 21 C 1.54891 * 102.77697 * 37.88583 * 20 19 18 22 22 C 1.53873 * 110.03572 * 300.68871 * 18 2 1 23 23 H 1.08998 * 109.47283 * 94.70371 * 1 2 3 24 24 H 1.09000 * 109.47344 * 214.70730 * 1 2 3 25 25 H 1.09006 * 109.46969 * 334.69917 * 1 2 3 26 26 H 0.96996 * 119.99458 * 5.01106 * 5 3 2 27 27 H 1.08994 * 109.47505 * 64.99160 * 6 5 3 28 28 H 1.09000 * 109.46882 * 304.99537 * 6 5 3 29 29 H 0.96997 * 119.99686 * 185.00053 * 11 10 8 30 30 H 1.09005 * 117.49733 * 214.96647 * 16 7 6 31 31 H 1.09000 * 117.50300 * 359.97438 * 16 7 6 32 32 H 1.08996 * 117.49946 * 252.50864 * 17 16 7 33 33 H 1.09008 * 117.51812 * 107.47888 * 17 16 7 34 34 H 1.09004 * 110.01584 * 179.29941 * 18 2 1 35 35 H 1.09001 * 110.48404 * 335.78439 * 19 18 2 36 36 H 1.09007 * 110.48374 * 98.41905 * 19 18 2 37 37 H 1.09002 * 110.72500 * 279.57771 * 20 19 18 38 38 H 1.09005 * 110.92642 * 156.29154 * 20 19 18 39 39 H 1.08998 * 110.49002 * 203.40172 * 21 20 19 40 40 H 1.09008 * 110.59670 * 80.81631 * 21 20 19 41 41 H 1.08999 * 110.03810 * 238.56815 * 22 18 2 42 42 H 1.09004 * 110.03088 * 0.02562 * 22 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3514 1.1692 -0.0905 5 7 1.4688 2.3323 0.1004 6 6 2.1888 3.6033 -0.0100 7 6 1.2255 4.7605 0.2620 8 6 0.4808 4.6925 1.5704 9 1 -0.5598 4.9782 1.6149 10 6 1.1264 4.2602 2.7093 11 7 2.3649 3.8234 2.6376 12 14 0.2422 4.2951 4.3545 13 1 -0.4634 3.0055 4.5646 14 1 1.2305 4.5018 5.4433 15 1 -0.7435 5.4058 4.3632 16 6 1.6202 6.1452 -0.2552 17 6 0.4933 5.3667 -0.9370 18 6 2.1974 -1.2687 0.0006 19 6 1.7948 -2.1119 -1.2269 20 6 1.7818 -3.5685 -0.6985 21 6 1.2034 -3.4098 0.7295 22 6 1.8220 -2.0936 1.2441 23 1 -0.3634 -0.0843 -1.0242 24 1 -0.3634 -0.8448 0.5851 25 1 -0.3633 0.9291 0.4392 26 1 0.5097 2.3291 0.2456 27 1 2.6006 3.7016 -1.0144 28 1 2.9991 3.6263 0.7187 29 1 2.7944 3.4519 3.4239 30 1 1.3413 7.0071 0.3510 31 1 2.5666 6.2322 -0.7889 32 1 0.6982 4.9414 -1.9194 33 1 -0.5271 5.7161 -0.7794 34 1 3.2709 -1.0798 -0.0120 35 1 0.8038 -1.8249 -1.5784 36 1 2.5302 -2.0008 -2.0238 37 1 2.7926 -3.9749 -0.6628 38 1 1.1351 -4.1985 -1.3094 39 1 1.5072 -4.2459 1.3593 40 1 0.1165 -3.3332 0.6967 41 1 2.7133 -2.3058 1.8345 42 1 1.0945 -1.5501 1.8470 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407973103.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:59 Heat of formation + Delta-G solvation = -22.660853 kcal Electronic energy + Delta-G solvation = -21284.022947 eV Core-core repulsion = 18264.055282 eV Total energy + Delta-G solvation = -3019.967666 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.22546 -39.12903 -38.23213 -35.54090 -34.45117 -34.06810 -29.61840 -29.25544 -28.00990 -27.46269 -26.32137 -22.97666 -21.77834 -21.50486 -21.12932 -20.01115 -19.28571 -17.94635 -17.44920 -16.76933 -16.53088 -16.17810 -15.87245 -15.48490 -14.98392 -14.55598 -14.48293 -14.24787 -13.84693 -13.53047 -13.32763 -13.11025 -12.89906 -12.74773 -12.63496 -12.48099 -12.29407 -12.02089 -11.96721 -11.92346 -11.62858 -11.48353 -11.41017 -11.00423 -10.83277 -10.63980 -10.14995 -9.84557 -9.23079 -7.92808 -6.18814 1.39988 1.44919 1.52982 1.89831 2.37820 2.42006 3.02318 3.33436 3.65313 3.73471 3.75630 4.01365 4.26742 4.31522 4.48300 4.54256 4.55801 4.57767 4.60587 4.67781 4.75489 4.81901 4.83608 4.85835 4.96943 5.00303 5.09026 5.12647 5.21563 5.26409 5.33440 5.35309 5.49280 5.54511 5.61617 5.78270 5.99002 6.00877 6.18648 6.39293 6.83706 7.30328 7.47241 7.84482 8.94367 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020838 B = 0.005917 C = 0.005129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.374168 B = 4731.126750 C = 5457.525904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.629 5.629 3 C 0.693 3.307 4 O -0.651 6.651 5 N -0.699 5.699 6 C 0.190 3.810 7 C 0.007 3.993 8 C -0.501 4.501 9 H 0.060 0.940 10 C 0.033 3.967 11 N -0.891 5.891 12 Si 0.949 3.051 13 H -0.275 1.275 14 H -0.294 1.294 15 H -0.267 1.267 16 C -0.198 4.198 17 C -0.182 4.182 18 C 0.146 3.854 19 C -0.127 4.127 20 C -0.114 4.114 21 C -0.113 4.113 22 C -0.136 4.136 23 H 0.071 0.929 24 H 0.090 0.910 25 H 0.062 0.938 26 H 0.399 0.601 27 H 0.011 0.989 28 H 0.074 0.926 29 H 0.254 0.746 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.061 0.939 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.684 -13.386 -5.278 15.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.366 5.366 3 C 0.395 3.605 4 O -0.535 6.535 5 N -0.352 5.352 6 C 0.065 3.935 7 C 0.006 3.994 8 C -0.539 4.539 9 H 0.078 0.922 10 C -0.169 4.169 11 N -0.528 5.528 12 Si 0.775 3.225 13 H -0.201 1.201 14 H -0.220 1.220 15 H -0.191 1.191 16 C -0.237 4.237 17 C -0.219 4.219 18 C 0.042 3.958 19 C -0.166 4.166 20 C -0.152 4.152 21 C -0.151 4.151 22 C -0.175 4.175 23 H 0.089 0.911 24 H 0.108 0.892 25 H 0.080 0.920 26 H 0.237 0.763 27 H 0.029 0.971 28 H 0.092 0.908 29 H 0.064 0.936 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.082 0.918 35 H 0.098 0.902 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.080 0.920 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.672 -13.351 -5.219 15.416 hybrid contribution -0.288 0.566 1.137 1.302 sum -5.960 -12.785 -4.082 14.684 Atomic orbital electron populations 1.21804 0.78416 1.03346 1.02789 1.47125 1.07205 1.03862 1.78416 1.16190 0.84851 0.81574 0.77922 1.90771 1.14329 1.87080 1.61311 1.44830 1.11359 1.03852 1.75145 1.20592 0.95553 0.81123 0.96259 1.19259 0.97111 0.90150 0.92881 1.20655 0.96451 1.45251 0.91511 0.92155 1.25630 0.95093 0.94521 1.01644 1.70057 1.12963 1.40198 1.29566 0.85694 0.78186 0.78609 0.79975 1.20058 1.22038 1.19148 1.22926 0.98094 0.97643 1.05006 1.22917 0.96332 1.05941 0.96676 1.21675 0.96055 0.81747 0.96296 1.22696 1.02146 0.95558 0.96189 1.22450 1.01803 0.94858 0.96113 1.22320 1.00610 0.95681 0.96441 1.22537 1.01077 0.97081 0.96779 0.91061 0.89154 0.91983 0.76342 0.97123 0.90772 0.93637 0.90412 0.90795 0.89757 0.89503 0.91779 0.90164 0.92160 0.91232 0.89308 0.90326 0.90388 0.92016 0.91934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.02 9.24 127.77 1.18 3.20 16 2 N -0.63 -21.63 2.75 -836.53 -2.30 -23.93 16 3 C 0.69 31.52 8.27 179.05 1.48 33.00 16 4 O -0.65 -35.29 15.68 -4.01 -0.06 -35.35 16 5 N -0.70 -31.59 5.24 -478.54 -2.51 -34.09 16 6 C 0.19 9.49 4.71 86.38 0.41 9.90 16 7 C 0.01 0.32 1.97 -52.93 -0.10 0.22 16 8 C -0.50 -25.47 8.41 25.60 0.22 -25.26 16 9 H 0.06 3.00 7.82 -2.91 -0.02 2.98 16 10 C 0.03 1.71 5.39 84.65 0.46 2.16 16 11 N -0.89 -50.29 10.48 21.45 0.22 -50.07 16 12 Si 0.95 41.92 29.54 68.60 2.03 43.95 16 13 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 14 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 15 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 16 C -0.20 -8.63 9.95 30.59 0.30 -8.32 16 17 C -0.18 -7.24 9.92 30.59 0.30 -6.94 16 18 C 0.15 4.40 3.30 45.72 0.15 4.55 16 19 C -0.13 -2.84 6.43 31.69 0.20 -2.64 16 20 C -0.11 -1.87 6.91 31.91 0.22 -1.65 16 21 C -0.11 -1.90 6.83 31.67 0.22 -1.68 16 22 C -0.14 -3.36 6.02 31.32 0.19 -3.17 16 23 H 0.07 1.52 7.68 -2.39 -0.02 1.50 16 24 H 0.09 1.85 6.81 -2.39 -0.02 1.84 16 25 H 0.06 1.73 5.92 -2.38 -0.01 1.72 16 26 H 0.40 16.64 5.70 -92.71 -0.53 16.11 16 27 H 0.01 0.53 8.09 -2.39 -0.02 0.51 16 28 H 0.07 4.37 5.86 -2.39 -0.01 4.36 16 29 H 0.25 14.22 8.32 -92.71 -0.77 13.45 16 30 H 0.08 3.38 8.14 -2.38 -0.02 3.36 16 31 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 32 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 33 H 0.09 3.27 8.14 -2.38 -0.02 3.25 16 34 H 0.06 2.39 6.95 -2.38 -0.02 2.37 16 35 H 0.08 1.64 6.76 -2.39 -0.02 1.63 16 36 H 0.06 1.42 8.14 -2.38 -0.02 1.41 16 37 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 39 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 41 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.06 1.65 6.89 -2.39 -0.02 1.64 16 Total: -1.00 -65.35 330.58 3.08 -62.27 By element: Atomic # 1 Polarization: 33.38 SS G_CDS: 0.47 Total: 33.85 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: 5.22 Total: 3.38 kcal Atomic # 7 Polarization: -103.51 SS G_CDS: -4.58 Total: -108.09 kcal Atomic # 8 Polarization: -35.29 SS G_CDS: -0.06 Total: -35.35 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -65.35 3.08 -62.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407973103.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.609 kcal (2) G-P(sol) polarization free energy of solvation -65.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds