Wall clock time and date at job start Mon Mar 30 2020 01:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46902 * 111.00044 * 2 1 4 4 C 1.53006 * 109.46626 * 66.04918 * 3 2 1 5 5 H 1.08992 * 109.47046 * 304.99696 * 4 3 2 6 6 C 1.47204 * 109.47257 * 64.99983 * 4 3 2 7 7 N 3.66490 * 112.02778 * 75.46110 * 2 1 3 8 8 C 1.52999 * 109.46811 * 184.99853 * 4 3 2 9 9 C 1.50704 * 109.46935 * 175.00197 * 8 4 3 10 10 H 1.08000 * 120.00086 * 359.97438 * 9 8 4 11 11 C 1.37884 * 119.99742 * 180.02562 * 9 8 4 12 12 N 1.31510 * 119.99866 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99621 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46905 * 60.00135 * 13 11 9 15 15 H 1.48497 * 109.46651 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47277 * 300.00115 * 13 11 9 17 17 C 1.46908 * 111.00118 * 236.05156 * 2 1 3 18 18 H 1.08992 * 109.47182 * 178.95709 * 17 2 1 19 19 C 1.53000 * 109.46869 * 58.95124 * 17 2 1 20 20 C 1.53005 * 109.46663 * 180.02562 * 19 17 2 21 21 C 1.53001 * 109.47214 * 60.00230 * 20 19 17 22 22 C 1.53005 * 109.46933 * 299.99781 * 21 20 19 23 23 C 1.52995 * 109.46933 * 60.00109 * 22 21 20 24 24 H 1.08999 * 109.47443 * 60.00179 * 23 22 21 25 25 O 1.42904 * 109.47017 * 179.97438 * 23 22 21 26 26 H 1.09000 * 109.47532 * 59.99517 * 1 2 3 27 27 H 1.09001 * 109.47296 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47027 * 299.99634 * 1 2 3 29 29 H 1.08993 * 109.47737 * 306.05050 * 3 2 1 30 30 H 1.09000 * 109.47263 * 186.04612 * 3 2 1 31 31 H 1.09003 * 109.46920 * 294.99990 * 8 4 3 32 32 H 1.08995 * 109.47278 * 54.99923 * 8 4 3 33 33 H 0.97001 * 119.99765 * 179.97438 * 12 11 9 34 34 H 1.08997 * 109.47356 * 299.99940 * 19 17 2 35 35 H 1.08996 * 109.47290 * 60.00764 * 19 17 2 36 36 H 1.08997 * 109.46881 * 299.99858 * 20 19 17 37 37 H 1.09001 * 109.46812 * 180.02562 * 20 19 17 38 38 H 1.08996 * 109.46840 * 180.02562 * 21 20 19 39 39 H 1.08994 * 109.46851 * 59.99655 * 21 20 19 40 40 H 1.08999 * 109.46910 * 299.99961 * 22 21 20 41 41 H 1.08999 * 109.46783 * 180.02562 * 22 21 20 42 42 H 0.96693 * 114.00323 * 300.00492 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0573 1.3184 5 1 0.5532 2.0057 1.4692 6 6 2.3156 1.3775 2.4305 7 7 2.8435 0.8529 3.2886 8 6 2.0699 3.5223 1.2691 9 6 1.6031 4.2286 2.5158 10 1 1.0488 3.6869 3.2679 11 6 1.8829 5.5667 2.6958 12 7 2.5575 6.2264 1.7798 13 14 1.3037 6.4423 4.2409 14 1 1.8990 5.7877 5.4335 15 1 1.7294 7.8641 4.1931 16 1 -0.1773 6.3710 4.3246 17 6 1.9955 -0.7659 -1.1377 18 1 3.0848 -0.7342 -1.1241 19 6 1.4836 -0.1555 -2.4440 20 6 2.0315 -0.9536 -3.6288 21 6 1.5618 -2.4061 -3.5262 22 6 2.0736 -3.0165 -2.2199 23 6 1.5258 -2.2184 -1.0351 24 1 0.4363 -2.2498 -1.0484 25 8 2.0033 -2.7889 0.1850 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.5611 1.9274 -0.8308 30 1 3.0797 1.3444 -0.1082 31 1 3.1570 3.5743 1.2074 32 1 1.6330 4.0031 0.3939 33 1 2.7540 7.1679 1.9063 34 1 0.3942 -0.1873 -2.4576 35 1 1.8179 0.8794 -2.5169 36 1 3.1209 -0.9221 -3.6154 37 1 1.6672 -0.5185 -4.5595 38 1 1.9525 -2.9747 -4.3701 39 1 0.4724 -2.4374 -3.5396 40 1 3.1631 -2.9851 -2.2065 41 1 1.7394 -4.0514 -2.1470 42 1 1.7426 -3.7106 0.3169 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426197915.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:35 Heat of formation + Delta-G solvation = -40.767804 kcal Electronic energy + Delta-G solvation = -20819.778219 eV Core-core repulsion = 17799.025377 eV Total energy + Delta-G solvation = -3020.752842 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.93539 -37.20884 -35.67222 -35.06305 -33.48851 -31.68779 -30.05632 -28.84407 -27.32816 -25.46822 -23.42254 -22.38010 -21.57137 -20.99781 -19.54099 -17.26655 -16.75089 -16.47811 -15.91919 -15.24915 -14.77001 -14.56335 -14.48505 -13.86508 -13.72536 -13.43038 -13.16875 -12.88411 -12.59462 -12.36629 -12.12634 -11.83366 -11.82339 -11.70696 -11.34958 -11.25854 -11.09908 -10.99166 -10.90310 -10.86600 -10.59980 -10.52069 -10.22873 -10.03849 -9.86589 -9.45922 -9.18221 -8.41902 -7.98676 -6.06186 -4.08983 3.33622 3.37662 3.41820 3.83396 3.94604 4.00613 4.09868 4.44386 4.51328 4.69416 4.80223 4.95500 4.97178 5.05440 5.12054 5.21027 5.30262 5.32010 5.41254 5.51067 5.56433 5.64272 5.69806 5.77989 5.85384 5.88502 5.90949 5.96089 5.97192 6.13947 6.14927 6.24111 6.46753 6.57022 7.25530 7.28771 7.46603 7.58026 7.70491 7.89288 8.27601 8.71191 8.95677 9.56139 11.04771 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.032239 B = 0.004225 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.306932 B = 6625.661274 C = 7109.398278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.527 5.527 3 C 0.061 3.939 4 C 0.011 3.989 5 H 0.099 0.901 6 C 0.256 3.744 7 N -0.479 5.479 8 C 0.032 3.968 9 C -0.525 4.525 10 H 0.056 0.944 11 C 0.063 3.937 12 N -0.893 5.893 13 Si 0.891 3.109 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.275 1.275 17 C 0.095 3.905 18 H 0.086 0.914 19 C -0.155 4.155 20 C -0.117 4.117 21 C -0.117 4.117 22 C -0.152 4.152 23 C 0.114 3.886 24 H 0.054 0.946 25 O -0.546 6.546 26 H 0.029 0.971 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.026 0.974 32 H 0.036 0.964 33 H 0.262 0.738 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.685 -16.192 -13.604 21.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.249 5.249 3 C -0.068 4.068 4 C -0.011 4.011 5 H 0.117 0.883 6 C -0.061 4.061 7 N -0.156 5.156 8 C -0.007 4.007 9 C -0.563 4.563 10 H 0.074 0.926 11 C -0.139 4.139 12 N -0.531 5.531 13 Si 0.719 3.281 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.201 1.201 17 C -0.014 4.014 18 H 0.105 0.895 19 C -0.194 4.194 20 C -0.156 4.156 21 C -0.155 4.155 22 C -0.191 4.191 23 C 0.054 3.946 24 H 0.071 0.929 25 O -0.350 6.350 26 H 0.047 0.953 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.044 0.956 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -3.399 -16.425 -11.823 20.521 hybrid contribution -1.018 0.638 -0.350 1.251 sum -4.417 -15.787 -12.172 20.418 Atomic orbital electron populations 1.22520 0.88047 1.01529 1.01182 1.62181 1.07612 1.13908 1.41201 1.22270 1.00710 0.87223 0.96564 1.19229 0.99140 0.96617 0.86093 0.88328 1.28800 0.92784 0.90980 0.93517 1.80962 1.10581 1.12213 1.11799 1.19164 0.97683 0.85457 0.98376 1.21115 1.35957 0.94801 1.04466 0.92568 1.24945 0.94949 0.97546 0.96478 1.69929 1.39501 1.09623 1.34078 0.86659 0.79223 0.78524 0.83708 1.20204 1.21215 1.20079 1.21668 1.00434 0.91207 0.88084 0.89541 1.22258 1.01553 1.00491 0.95080 1.21505 1.01069 0.94914 0.98077 1.21490 1.00812 0.96168 0.96986 1.22300 1.02102 0.99253 0.95402 1.21821 0.96742 0.92523 0.83495 0.92856 1.86733 1.78534 1.30093 1.39640 0.95254 0.91838 0.90792 0.92858 0.90428 0.95611 0.94565 0.92789 0.91316 0.90624 0.91715 0.91791 0.91828 0.91981 0.91046 0.91795 0.78701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 8.52 60.06 0.51 0.70 16 2 N -0.53 -7.59 4.32 -234.88 -1.01 -8.60 16 3 C 0.06 0.96 3.76 -3.82 -0.01 0.94 16 4 C 0.01 0.22 2.13 -93.40 -0.20 0.02 16 5 H 0.10 1.80 6.33 -51.93 -0.33 1.47 16 6 C 0.26 5.69 13.67 -20.76 -0.28 5.41 16 7 N -0.48 -11.55 18.54 42.15 0.78 -10.77 16 8 C 0.03 0.75 4.42 -27.88 -0.12 0.63 16 9 C -0.53 -14.24 8.60 -34.44 -0.30 -14.54 16 10 H 0.06 1.52 7.59 -52.49 -0.40 1.12 16 11 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 12 N -0.89 -25.81 13.29 55.43 0.74 -25.08 16 13 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 15 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 C 0.10 1.15 1.92 -67.71 -0.13 1.02 16 18 H 0.09 1.16 8.03 -51.93 -0.42 0.75 16 19 C -0.15 -1.53 4.51 -26.73 -0.12 -1.65 16 20 C -0.12 -0.97 5.92 -26.73 -0.16 -1.13 16 21 C -0.12 -0.86 5.92 -26.73 -0.16 -1.02 16 22 C -0.15 -1.26 5.54 -26.73 -0.15 -1.41 16 23 C 0.11 1.20 2.60 -26.73 -0.07 1.13 16 24 H 0.05 0.53 6.34 -51.93 -0.33 0.20 16 25 O -0.55 -6.82 13.18 -35.23 -0.46 -7.29 16 26 H 0.03 0.33 6.51 -51.93 -0.34 -0.01 16 27 H 0.06 0.73 6.13 -51.93 -0.32 0.41 16 28 H 0.07 0.99 6.37 -51.93 -0.33 0.66 16 29 H 0.05 0.76 6.94 -51.93 -0.36 0.40 16 30 H 0.08 1.26 8.00 -51.93 -0.42 0.84 16 31 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 34 H 0.07 0.66 6.47 -51.93 -0.34 0.32 16 35 H 0.08 0.80 6.75 -51.93 -0.35 0.45 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.37 2.94 9.08 45.56 0.41 3.35 16 LS Contribution 331.15 15.07 4.99 4.99 Total: -1.00 -32.08 331.15 -7.30 -39.38 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -6.03 Total: -0.93 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -1.29 Total: -8.25 kcal Atomic # 7 Polarization: -44.95 SS G_CDS: 0.50 Total: -44.45 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: -0.46 Total: -7.29 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.08 -7.30 -39.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426197915.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.388 kcal (2) G-P(sol) polarization free energy of solvation -32.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds