Wall clock time and date at job start Mon Mar 30 2020 01:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46902 * 111.00044 * 2 1 4 4 C 1.53006 * 109.46626 * 66.04918 * 3 2 1 5 5 H 1.08992 * 109.47046 * 304.99696 * 4 3 2 6 6 C 1.47204 * 109.47257 * 64.99983 * 4 3 2 7 7 N 3.66490 * 112.02778 * 75.46110 * 2 1 3 8 8 C 1.52999 * 109.46811 * 184.99853 * 4 3 2 9 9 C 1.50704 * 109.46935 * 175.00197 * 8 4 3 10 10 H 1.08000 * 120.00086 * 359.97438 * 9 8 4 11 11 C 1.37884 * 119.99742 * 180.02562 * 9 8 4 12 12 N 1.31510 * 119.99866 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99621 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46905 * 60.00135 * 13 11 9 15 15 H 1.48497 * 109.46651 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47277 * 300.00115 * 13 11 9 17 17 C 1.46908 * 111.00118 * 236.05156 * 2 1 3 18 18 H 1.08992 * 109.47182 * 178.95709 * 17 2 1 19 19 C 1.53000 * 109.46869 * 58.95124 * 17 2 1 20 20 C 1.53005 * 109.46663 * 180.02562 * 19 17 2 21 21 C 1.53001 * 109.47214 * 60.00230 * 20 19 17 22 22 C 1.53005 * 109.46933 * 299.99781 * 21 20 19 23 23 C 1.52995 * 109.46933 * 60.00109 * 22 21 20 24 24 H 1.08999 * 109.47443 * 60.00179 * 23 22 21 25 25 O 1.42904 * 109.47017 * 179.97438 * 23 22 21 26 26 H 1.09000 * 109.47532 * 59.99517 * 1 2 3 27 27 H 1.09001 * 109.47296 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47027 * 299.99634 * 1 2 3 29 29 H 1.08993 * 109.47737 * 306.05050 * 3 2 1 30 30 H 1.09000 * 109.47263 * 186.04612 * 3 2 1 31 31 H 1.09003 * 109.46920 * 294.99990 * 8 4 3 32 32 H 1.08995 * 109.47278 * 54.99923 * 8 4 3 33 33 H 0.97001 * 119.99765 * 179.97438 * 12 11 9 34 34 H 1.08997 * 109.47356 * 299.99940 * 19 17 2 35 35 H 1.08996 * 109.47290 * 60.00764 * 19 17 2 36 36 H 1.08997 * 109.46881 * 299.99858 * 20 19 17 37 37 H 1.09001 * 109.46812 * 180.02562 * 20 19 17 38 38 H 1.08996 * 109.46840 * 180.02562 * 21 20 19 39 39 H 1.08994 * 109.46851 * 59.99655 * 21 20 19 40 40 H 1.08999 * 109.46910 * 299.99961 * 22 21 20 41 41 H 1.08999 * 109.46783 * 180.02562 * 22 21 20 42 42 H 0.96693 * 114.00323 * 300.00492 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0573 1.3184 5 1 0.5532 2.0057 1.4692 6 6 2.3156 1.3775 2.4305 7 7 2.8435 0.8529 3.2886 8 6 2.0699 3.5223 1.2691 9 6 1.6031 4.2286 2.5158 10 1 1.0488 3.6869 3.2679 11 6 1.8829 5.5667 2.6958 12 7 2.5575 6.2264 1.7798 13 14 1.3037 6.4423 4.2409 14 1 1.8990 5.7877 5.4335 15 1 1.7294 7.8641 4.1931 16 1 -0.1773 6.3710 4.3246 17 6 1.9955 -0.7659 -1.1377 18 1 3.0848 -0.7342 -1.1241 19 6 1.4836 -0.1555 -2.4440 20 6 2.0315 -0.9536 -3.6288 21 6 1.5618 -2.4061 -3.5262 22 6 2.0736 -3.0165 -2.2199 23 6 1.5258 -2.2184 -1.0351 24 1 0.4363 -2.2498 -1.0484 25 8 2.0033 -2.7889 0.1850 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.5611 1.9274 -0.8308 30 1 3.0797 1.3444 -0.1082 31 1 3.1570 3.5743 1.2074 32 1 1.6330 4.0031 0.3939 33 1 2.7540 7.1679 1.9063 34 1 0.3942 -0.1873 -2.4576 35 1 1.8179 0.8794 -2.5169 36 1 3.1209 -0.9221 -3.6154 37 1 1.6672 -0.5185 -4.5595 38 1 1.9525 -2.9747 -4.3701 39 1 0.4724 -2.4374 -3.5396 40 1 3.1631 -2.9851 -2.2065 41 1 1.7394 -4.0514 -2.1470 42 1 1.7426 -3.7106 0.3169 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426197915.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:35 Heat of formation + Delta-G solvation = -62.952182 kcal Electronic energy + Delta-G solvation = -20820.740206 eV Core-core repulsion = 17799.025377 eV Total energy + Delta-G solvation = -3021.714829 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.84710 -38.57266 -36.88775 -36.13425 -35.39079 -33.44312 -30.82083 -29.88602 -28.74129 -26.90327 -24.56452 -23.71090 -22.97844 -21.86948 -20.39207 -18.50606 -18.27255 -18.10029 -17.09878 -16.47313 -16.23208 -15.75764 -15.41342 -14.94145 -14.77529 -14.66967 -14.27549 -14.21218 -13.94451 -13.73731 -13.63389 -13.23768 -13.05298 -12.94583 -12.82712 -12.67666 -12.45564 -12.44691 -12.21502 -12.02477 -11.79953 -11.61998 -11.56263 -11.37433 -11.21586 -10.85313 -10.64649 -10.54651 -9.03739 -8.19079 -6.27545 1.40928 1.43195 1.50183 2.07336 2.15944 2.41892 2.94272 3.16121 3.31733 3.36041 3.79792 3.96272 4.09406 4.12461 4.23711 4.27372 4.34273 4.39746 4.46275 4.55691 4.60541 4.67028 4.76621 4.79270 4.86085 4.97175 5.01005 5.14473 5.18613 5.20023 5.21588 5.29576 5.33979 5.45663 5.51750 5.61147 5.78813 6.10773 6.23951 6.26813 6.82951 6.94353 7.03699 7.40853 8.91762 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.032239 B = 0.004225 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.306932 B = 6625.661274 C = 7109.398278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.546 5.546 3 C 0.072 3.928 4 C 0.022 3.978 5 H 0.116 0.884 6 C 0.266 3.734 7 N -0.515 5.515 8 C 0.039 3.961 9 C -0.541 4.541 10 H 0.053 0.947 11 C 0.013 3.987 12 N -0.923 5.923 13 Si 0.949 3.051 14 H -0.282 1.282 15 H -0.281 1.281 16 H -0.262 1.262 17 C 0.093 3.907 18 H 0.064 0.936 19 C -0.148 4.148 20 C -0.116 4.116 21 C -0.113 4.113 22 C -0.146 4.146 23 C 0.114 3.886 24 H 0.064 0.936 25 O -0.577 6.577 26 H 0.046 0.954 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.066 0.934 31 H -0.001 1.001 32 H 0.036 0.964 33 H 0.264 0.736 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.058 0.942 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.059 0.941 41 H 0.081 0.919 42 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.217 -17.093 -14.672 23.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.269 5.269 3 C -0.057 4.057 4 C 0.000 4.000 5 H 0.134 0.866 6 C -0.050 4.050 7 N -0.193 5.193 8 C 0.001 3.999 9 C -0.579 4.579 10 H 0.071 0.929 11 C -0.186 4.186 12 N -0.563 5.563 13 Si 0.774 3.226 14 H -0.208 1.208 15 H -0.206 1.206 16 H -0.186 1.186 17 C -0.016 4.016 18 H 0.083 0.917 19 C -0.187 4.187 20 C -0.155 4.155 21 C -0.151 4.151 22 C -0.184 4.184 23 C 0.055 3.945 24 H 0.082 0.918 25 O -0.384 6.384 26 H 0.064 0.936 27 H 0.094 0.906 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.017 0.983 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.100 0.900 42 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -4.946 -17.350 -12.901 22.179 hybrid contribution -0.520 0.880 -0.017 1.022 sum -5.466 -16.470 -12.918 21.634 Atomic orbital electron populations 1.22552 0.86793 1.02479 1.01437 1.62107 1.08890 1.12790 1.43079 1.22058 1.00325 0.88502 0.94765 1.19215 0.99631 0.94086 0.87082 0.86605 1.29362 0.92038 0.90303 0.93310 1.80952 1.11801 1.13490 1.13063 1.18981 0.95826 0.88001 0.97118 1.21511 1.35642 0.95248 1.05463 0.92899 1.25707 0.95196 0.98474 0.99236 1.70025 1.40594 1.09942 1.35732 0.85746 0.79425 0.77513 0.79889 1.20790 1.20583 1.18628 1.21726 0.99216 0.92260 0.88388 0.91744 1.22187 1.01971 1.00051 0.94523 1.21508 1.00704 0.95502 0.97747 1.21486 1.01370 0.95424 0.96796 1.22237 1.01294 0.99974 0.94895 1.21883 0.97232 0.91609 0.83771 0.91835 1.86679 1.79132 1.31755 1.40791 0.93550 0.90590 0.91870 0.91041 0.91506 0.98273 0.94575 0.92672 0.90409 0.91514 0.92353 0.90581 0.90498 0.91043 0.92240 0.89995 0.76716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.34 8.52 127.69 1.09 1.43 16 2 N -0.55 -15.18 4.32 -897.04 -3.87 -19.05 16 3 C 0.07 2.25 3.76 86.31 0.32 2.57 16 4 C 0.02 0.83 2.13 -12.60 -0.03 0.80 16 5 H 0.12 4.09 6.33 -2.39 -0.02 4.08 16 6 C 0.27 11.88 13.67 89.44 1.22 13.10 16 7 N -0.52 -25.12 18.54 20.01 0.37 -24.75 16 8 C 0.04 1.89 4.42 29.85 0.13 2.02 16 9 C -0.54 -29.35 8.60 25.60 0.22 -29.13 16 10 H 0.05 2.85 7.59 -2.91 -0.02 2.83 16 11 C 0.01 0.72 5.46 84.66 0.46 1.18 16 12 N -0.92 -53.65 13.29 21.45 0.28 -53.36 16 13 Si 0.95 44.01 29.54 68.60 2.03 46.03 16 14 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 15 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 16 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 17 C 0.09 2.14 1.92 44.91 0.09 2.23 16 18 H 0.06 1.75 8.03 -2.39 -0.02 1.74 16 19 C -0.15 -2.66 4.51 30.60 0.14 -2.52 16 20 C -0.12 -1.67 5.92 30.60 0.18 -1.49 16 21 C -0.11 -1.35 5.92 30.60 0.18 -1.17 16 22 C -0.15 -2.09 5.54 30.59 0.17 -1.92 16 23 C 0.11 2.20 2.60 30.59 0.08 2.28 16 24 H 0.06 1.10 6.34 -2.39 -0.02 1.08 16 25 O -0.58 -13.83 13.18 -148.98 -1.96 -15.79 16 26 H 0.05 0.91 6.51 -2.39 -0.02 0.89 16 27 H 0.08 1.56 6.13 -2.39 -0.01 1.54 16 28 H 0.06 1.58 6.37 -2.39 -0.02 1.57 16 29 H 0.07 1.95 6.94 -2.39 -0.02 1.94 16 30 H 0.07 2.20 8.00 -2.39 -0.02 2.18 16 31 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 32 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 34 H 0.08 1.26 6.47 -2.39 -0.02 1.25 16 35 H 0.07 1.31 6.75 -2.39 -0.02 1.29 16 36 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16 41 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.38 5.66 9.08 -74.06 -0.67 4.98 16 Total: -1.00 -68.32 331.15 1.44 -66.88 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 0.34 Total: 10.66 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: 4.26 Total: -10.61 kcal Atomic # 7 Polarization: -93.96 SS G_CDS: -3.22 Total: -97.17 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -1.96 Total: -15.79 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -68.32 1.44 -66.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426197915.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.931 kcal (2) G-P(sol) polarization free energy of solvation -68.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds