Wall clock time and date at job start Mon Mar 30 2020 00:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46899 * 109.47323 * 2 1 4 4 C 1.46895 * 110.99436 * 289.76185 * 3 2 1 5 5 C 1.50705 * 109.46909 * 169.99920 * 4 3 2 6 6 O 1.21280 * 120.00002 * 355.95147 * 5 4 3 7 7 N 1.34780 * 119.99828 * 175.95104 * 5 4 3 8 8 C 1.46499 * 120.00003 * 185.10177 * 7 5 4 9 9 C 1.52993 * 109.47482 * 185.03094 * 8 7 5 10 10 C 1.50698 * 115.54804 * 64.51571 * 9 8 7 11 11 H 1.08009 * 120.00242 * 268.69511 * 10 9 8 12 12 C 1.37874 * 120.00209 * 88.69731 * 10 9 8 13 13 N 1.31522 * 120.00011 * 180.12390 * 12 10 9 14 14 Si 1.86797 * 120.00042 * 0.11351 * 12 10 9 15 15 H 1.48506 * 109.46904 * 92.18184 * 14 12 10 16 16 H 1.48498 * 109.47545 * 212.17850 * 14 12 10 17 17 H 1.48505 * 109.47127 * 332.18425 * 14 12 10 18 18 C 1.52996 * 117.50024 * 278.84608 * 9 8 7 19 19 C 1.53001 * 117.50248 * 210.18595 * 9 8 7 20 20 C 1.46895 * 111.00307 * 165.81087 * 3 2 1 21 21 C 1.52998 * 117.49836 * 4.85796 * 20 3 2 22 22 C 1.52996 * 60.00382 * 252.51642 * 21 20 3 23 23 H 1.09002 * 109.47173 * 298.29216 * 1 2 3 24 24 H 1.09009 * 109.46945 * 178.29099 * 1 2 3 25 25 H 1.08991 * 109.47189 * 58.29333 * 1 2 3 26 26 H 1.09005 * 109.46833 * 119.99338 * 2 1 3 27 27 H 1.08993 * 109.47318 * 239.99065 * 2 1 3 28 28 H 1.08998 * 109.47700 * 289.99807 * 4 3 2 29 29 H 1.08999 * 109.47478 * 50.00090 * 4 3 2 30 30 H 0.96999 * 120.00499 * 5.11445 * 7 5 4 31 31 H 1.09001 * 109.47455 * 305.03870 * 8 7 5 32 32 H 1.09004 * 109.46992 * 65.03132 * 8 7 5 33 33 H 0.97003 * 119.99595 * 179.97438 * 13 12 10 34 34 H 1.09005 * 117.50091 * 0.02562 * 18 9 8 35 35 H 1.09004 * 117.50028 * 145.02023 * 18 9 8 36 36 H 1.09001 * 117.50042 * 214.98032 * 19 9 8 37 37 H 1.09007 * 117.49650 * 359.97438 * 19 9 8 38 38 H 1.08997 * 115.55245 * 150.57470 * 20 3 2 39 39 H 1.09001 * 117.50173 * 0.02562 * 21 20 3 40 40 H 1.09006 * 117.50190 * 145.02009 * 21 20 3 41 41 H 1.09004 * 117.49579 * 252.51237 * 22 21 20 42 42 H 1.08998 * 117.51695 * 107.48107 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7580 2.0357 -1.2907 5 6 2.0449 3.5108 -1.1768 6 8 2.3585 3.9867 -0.1062 7 7 1.9529 4.3012 -2.2646 8 6 2.3391 5.7118 -2.1800 9 6 2.0232 6.4076 -3.5054 10 6 0.5625 6.4816 -3.8685 11 1 0.1135 5.6996 -4.4631 12 6 -0.2008 7.5476 -3.4419 13 7 -1.4762 7.6109 -3.7568 14 14 0.5763 8.9017 -2.4164 15 1 1.0587 9.9848 -3.3106 16 1 -0.4321 9.4500 -1.4744 17 1 1.7204 8.3469 -1.6492 18 6 3.0275 6.2414 -4.6475 19 6 2.9138 7.5816 -3.9169 20 6 3.4487 1.4381 0.3362 21 6 4.1846 0.1075 0.5052 22 6 3.8643 0.9655 1.7308 23 1 -0.3633 0.4871 0.9049 24 1 -0.3633 -1.0273 -0.0307 25 1 -0.3633 0.5401 -0.8742 26 1 1.8933 -0.5138 0.8901 27 1 1.8934 -0.5139 -0.8898 28 1 2.4005 1.5986 -2.0550 29 1 0.7137 1.8890 -1.5665 30 1 1.6307 3.9361 -3.1036 31 1 1.7833 6.1931 -1.3753 32 1 3.4077 5.7844 -1.9772 33 1 -2.0133 8.3607 -3.4563 34 1 3.9132 5.6359 -4.4548 35 1 2.6318 6.1860 -5.6617 36 1 2.4432 8.4074 -4.4506 37 1 3.7246 7.8586 -3.2431 38 1 4.0037 2.2687 -0.0999 39 1 3.6086 -0.8075 0.3666 40 1 5.2241 0.0623 0.1800 41 1 4.6931 1.4849 2.2119 42 1 3.0774 0.6155 2.3988 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431175147.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:49 Heat of formation + Delta-G solvation = 26.481161 kcal Electronic energy + Delta-G solvation = -20662.250875 eV Core-core repulsion = 17644.414166 eV Total energy + Delta-G solvation = -3017.836708 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.74146 -38.30634 -36.94985 -34.39468 -33.36420 -32.12502 -30.71391 -27.63832 -25.95902 -24.70837 -23.14314 -22.18826 -21.78696 -20.39549 -19.56226 -19.03939 -17.10801 -16.41584 -16.31963 -15.82938 -15.15286 -14.84496 -14.54139 -14.28491 -13.64821 -13.55598 -13.30246 -12.91406 -12.72252 -12.50736 -12.32438 -12.16408 -11.86812 -11.64235 -11.33523 -11.16768 -10.99308 -10.82901 -10.66595 -10.50380 -10.34624 -10.19228 -9.67912 -9.31259 -9.18507 -8.65238 -8.57619 -8.26044 -8.12174 -6.15955 -4.20597 3.16093 3.28560 3.37754 3.39897 3.45915 3.84247 4.03455 4.40317 4.76231 4.84661 4.88033 4.95913 4.98228 5.11713 5.16098 5.31854 5.36126 5.43434 5.49613 5.55757 5.67353 5.68508 5.73440 5.91993 5.95093 6.00554 6.05184 6.07779 6.15995 6.22279 6.39656 6.50711 6.68455 6.96648 6.98694 7.01939 7.07397 7.17559 7.67315 8.20627 8.40302 8.83115 8.83647 9.47279 10.95380 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.024913 B = 0.004684 C = 0.004423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.655449 B = 5976.503285 C = 6328.808637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.047 3.953 3 N -0.489 5.489 4 C 0.035 3.965 5 C 0.505 3.495 6 O -0.535 6.535 7 N -0.706 5.706 8 C 0.159 3.841 9 C -0.015 4.015 10 C -0.490 4.490 11 H 0.078 0.922 12 C 0.080 3.920 13 N -0.895 5.895 14 Si 0.880 3.120 15 H -0.279 1.279 16 H -0.294 1.294 17 H -0.257 1.257 18 C -0.179 4.179 19 C -0.193 4.193 20 C 0.039 3.961 21 C -0.228 4.228 22 C -0.167 4.167 23 H 0.064 0.936 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.078 0.922 27 H 0.037 0.963 28 H 0.062 0.938 29 H 0.107 0.893 30 H 0.402 0.598 31 H 0.066 0.934 32 H 0.040 0.960 33 H 0.265 0.735 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.074 0.926 38 H 0.119 0.881 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.579 -14.294 4.623 17.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.080 4.080 3 N -0.211 5.211 4 C -0.096 4.096 5 C 0.290 3.710 6 O -0.412 6.412 7 N -0.356 5.356 8 C 0.035 3.965 9 C -0.016 4.016 10 C -0.527 4.527 11 H 0.096 0.904 12 C -0.123 4.123 13 N -0.532 5.532 14 Si 0.708 3.292 15 H -0.205 1.205 16 H -0.221 1.221 17 H -0.181 1.181 18 C -0.217 4.217 19 C -0.231 4.231 20 C -0.071 4.071 21 C -0.267 4.267 22 C -0.205 4.205 23 H 0.083 0.917 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.097 0.903 27 H 0.055 0.945 28 H 0.080 0.920 29 H 0.125 0.875 30 H 0.236 0.764 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.093 0.907 38 H 0.136 0.864 39 H 0.115 0.885 40 H 0.109 0.891 41 H 0.113 0.887 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.356 -13.564 5.763 16.942 hybrid contribution 0.526 0.312 -0.513 0.798 sum 8.881 -13.252 5.251 16.795 Atomic orbital electron populations 1.21842 0.94597 1.01424 1.03082 1.22226 0.96223 0.88615 1.00931 1.61468 1.14454 1.15899 1.29299 1.22038 1.03509 0.92948 0.91090 1.20346 0.78165 0.88220 0.84302 1.90675 1.47607 1.75709 1.27210 1.45824 1.66056 1.11005 1.12757 1.21084 0.96810 0.79935 0.98623 1.19639 0.93696 0.97292 0.91004 1.20164 0.89489 1.08755 1.34282 0.90411 1.24969 0.94509 0.97875 0.94957 1.69886 1.06329 1.31478 1.45502 0.86839 0.79509 0.82238 0.80639 1.20530 1.22069 1.18103 1.22859 1.00979 0.99588 0.98251 1.22939 1.02834 0.92806 1.04527 1.22552 0.87739 0.96371 1.00403 1.23644 1.01771 0.96444 1.04809 1.22967 1.02971 1.03161 0.91387 0.91659 0.92272 0.92328 0.90330 0.94465 0.92016 0.87477 0.76387 0.91623 0.94217 0.92482 0.90956 0.89412 0.89192 0.90739 0.86368 0.88451 0.89085 0.88692 0.88705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.97 37.16 0.37 -1.13 16 2 C 0.05 0.49 4.33 -3.82 -0.02 0.48 16 3 N -0.49 -6.60 4.39 -228.09 -1.00 -7.60 16 4 C 0.03 0.47 5.30 -4.98 -0.03 0.45 16 5 C 0.51 9.01 7.22 -10.98 -0.08 8.93 16 6 O -0.54 -11.49 15.08 5.56 0.08 -11.40 16 7 N -0.71 -12.88 5.45 -60.29 -0.33 -13.21 16 8 C 0.16 3.33 5.19 -4.05 -0.02 3.31 16 9 C -0.02 -0.33 0.82 -155.67 -0.13 -0.46 16 10 C -0.49 -12.81 9.29 -34.44 -0.32 -13.13 16 11 H 0.08 2.18 8.06 -52.48 -0.42 1.76 16 12 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 13 N -0.90 -26.53 13.96 55.43 0.77 -25.76 16 14 Si 0.88 21.58 24.77 -169.99 -4.21 17.37 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 16 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 17 H -0.26 -6.07 5.85 56.52 0.33 -5.74 16 18 C -0.18 -3.38 9.96 -26.70 -0.27 -3.64 16 19 C -0.19 -3.94 7.41 -26.70 -0.20 -4.14 16 20 C 0.04 0.51 5.21 -67.71 -0.35 0.16 16 21 C -0.23 -2.32 9.52 -26.73 -0.25 -2.58 16 22 C -0.17 -1.92 9.99 -26.73 -0.27 -2.19 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 25 H 0.06 0.60 6.46 -51.93 -0.34 0.26 16 26 H 0.08 0.76 5.95 -51.93 -0.31 0.46 16 27 H 0.04 0.35 7.90 -51.93 -0.41 -0.06 16 28 H 0.06 0.71 8.12 -51.93 -0.42 0.29 16 29 H 0.11 1.34 6.28 -51.93 -0.33 1.01 16 30 H 0.40 6.68 8.44 -40.82 -0.34 6.34 16 31 H 0.07 1.56 7.02 -51.93 -0.36 1.20 16 32 H 0.04 0.79 8.10 -51.93 -0.42 0.37 16 33 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.09 1.66 8.14 -51.93 -0.42 1.23 16 36 H 0.09 1.93 7.00 -51.93 -0.36 1.57 16 37 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.12 1.77 6.85 -51.93 -0.36 1.41 16 39 H 0.10 0.89 5.90 -51.93 -0.31 0.59 16 40 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.09 1.07 7.78 -51.93 -0.40 0.67 16 LS Contribution 332.53 15.07 5.01 5.01 Total: -1.00 -30.77 332.53 -8.27 -39.05 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -6.95 Total: 8.36 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: -1.65 Total: -11.82 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: -0.56 Total: -46.57 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.08 Total: -11.40 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.21 Total: 17.37 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.77 -8.27 -39.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431175147.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.531 kcal (2) G-P(sol) polarization free energy of solvation -30.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds