Wall clock time and date at job start Mon Mar 30 2020 00:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46899 * 109.47323 * 2 1 4 4 C 1.46895 * 110.99436 * 289.76185 * 3 2 1 5 5 C 1.50705 * 109.46909 * 169.99920 * 4 3 2 6 6 O 1.21280 * 120.00002 * 355.95147 * 5 4 3 7 7 N 1.34780 * 119.99828 * 175.95104 * 5 4 3 8 8 C 1.46499 * 120.00003 * 185.10177 * 7 5 4 9 9 C 1.52993 * 109.47482 * 185.03094 * 8 7 5 10 10 C 1.50698 * 115.54804 * 64.51571 * 9 8 7 11 11 H 1.08009 * 120.00242 * 268.69511 * 10 9 8 12 12 C 1.37874 * 120.00209 * 88.69731 * 10 9 8 13 13 N 1.31522 * 120.00011 * 180.12390 * 12 10 9 14 14 Si 1.86797 * 120.00042 * 0.11351 * 12 10 9 15 15 H 1.48506 * 109.46904 * 92.18184 * 14 12 10 16 16 H 1.48498 * 109.47545 * 212.17850 * 14 12 10 17 17 H 1.48505 * 109.47127 * 332.18425 * 14 12 10 18 18 C 1.52996 * 117.50024 * 278.84608 * 9 8 7 19 19 C 1.53001 * 117.50248 * 210.18595 * 9 8 7 20 20 C 1.46895 * 111.00307 * 165.81087 * 3 2 1 21 21 C 1.52998 * 117.49836 * 4.85796 * 20 3 2 22 22 C 1.52996 * 60.00382 * 252.51642 * 21 20 3 23 23 H 1.09002 * 109.47173 * 298.29216 * 1 2 3 24 24 H 1.09009 * 109.46945 * 178.29099 * 1 2 3 25 25 H 1.08991 * 109.47189 * 58.29333 * 1 2 3 26 26 H 1.09005 * 109.46833 * 119.99338 * 2 1 3 27 27 H 1.08993 * 109.47318 * 239.99065 * 2 1 3 28 28 H 1.08998 * 109.47700 * 289.99807 * 4 3 2 29 29 H 1.08999 * 109.47478 * 50.00090 * 4 3 2 30 30 H 0.96999 * 120.00499 * 5.11445 * 7 5 4 31 31 H 1.09001 * 109.47455 * 305.03870 * 8 7 5 32 32 H 1.09004 * 109.46992 * 65.03132 * 8 7 5 33 33 H 0.97003 * 119.99595 * 179.97438 * 13 12 10 34 34 H 1.09005 * 117.50091 * 0.02562 * 18 9 8 35 35 H 1.09004 * 117.50028 * 145.02023 * 18 9 8 36 36 H 1.09001 * 117.50042 * 214.98032 * 19 9 8 37 37 H 1.09007 * 117.49650 * 359.97438 * 19 9 8 38 38 H 1.08997 * 115.55245 * 150.57470 * 20 3 2 39 39 H 1.09001 * 117.50173 * 0.02562 * 21 20 3 40 40 H 1.09006 * 117.50190 * 145.02009 * 21 20 3 41 41 H 1.09004 * 117.49579 * 252.51237 * 22 21 20 42 42 H 1.08998 * 117.51695 * 107.48107 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7580 2.0357 -1.2907 5 6 2.0449 3.5108 -1.1768 6 8 2.3585 3.9867 -0.1062 7 7 1.9529 4.3012 -2.2646 8 6 2.3391 5.7118 -2.1800 9 6 2.0232 6.4076 -3.5054 10 6 0.5625 6.4816 -3.8685 11 1 0.1135 5.6996 -4.4631 12 6 -0.2008 7.5476 -3.4419 13 7 -1.4762 7.6109 -3.7568 14 14 0.5763 8.9017 -2.4164 15 1 1.0587 9.9848 -3.3106 16 1 -0.4321 9.4500 -1.4744 17 1 1.7204 8.3469 -1.6492 18 6 3.0275 6.2414 -4.6475 19 6 2.9138 7.5816 -3.9169 20 6 3.4487 1.4381 0.3362 21 6 4.1846 0.1075 0.5052 22 6 3.8643 0.9655 1.7308 23 1 -0.3633 0.4871 0.9049 24 1 -0.3633 -1.0273 -0.0307 25 1 -0.3633 0.5401 -0.8742 26 1 1.8933 -0.5138 0.8901 27 1 1.8934 -0.5139 -0.8898 28 1 2.4005 1.5986 -2.0550 29 1 0.7137 1.8890 -1.5665 30 1 1.6307 3.9361 -3.1036 31 1 1.7833 6.1931 -1.3753 32 1 3.4077 5.7844 -1.9772 33 1 -2.0133 8.3607 -3.4563 34 1 3.9132 5.6359 -4.4548 35 1 2.6318 6.1860 -5.6617 36 1 2.4432 8.4074 -4.4506 37 1 3.7246 7.8586 -3.2431 38 1 4.0037 2.2687 -0.0999 39 1 3.6086 -0.8075 0.3666 40 1 5.2241 0.0623 0.1800 41 1 4.6931 1.4849 2.2119 42 1 3.0774 0.6155 2.3988 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431175147.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:49 Heat of formation + Delta-G solvation = 4.905875 kcal Electronic energy + Delta-G solvation = -20663.186449 eV Core-core repulsion = 17644.414166 eV Total energy + Delta-G solvation = -3018.772283 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.98335 -39.53514 -38.53882 -35.31120 -34.92060 -34.20235 -31.65971 -28.99812 -27.73258 -26.22259 -23.98980 -23.37532 -23.05221 -21.63110 -21.13104 -20.40849 -18.60454 -17.98639 -17.43036 -16.98612 -16.92969 -16.30012 -15.83322 -15.57565 -15.00747 -14.83571 -14.71814 -14.34845 -14.08723 -13.96072 -13.74857 -13.27440 -13.09862 -12.98575 -12.67744 -12.48877 -12.19317 -12.14745 -11.98176 -11.81718 -11.58527 -11.57308 -11.24691 -10.98979 -10.84900 -10.63789 -10.29805 -9.83447 -9.04518 -8.30392 -6.36032 1.31842 1.39053 1.49000 1.76696 2.19046 2.35863 2.80233 3.05365 3.06447 3.26142 3.83487 4.00338 4.02226 4.05379 4.10474 4.15152 4.30231 4.36696 4.42172 4.45701 4.48920 4.54029 4.63613 4.76709 4.81913 4.85394 4.86791 4.92928 5.08197 5.10014 5.12893 5.24603 5.32028 5.37500 5.49407 5.63221 5.70340 6.01749 6.13478 6.28144 6.71479 6.79983 7.34372 7.42122 8.84273 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.024913 B = 0.004684 C = 0.004423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.655449 B = 5976.503285 C = 6328.808637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.048 3.952 3 N -0.511 5.511 4 C 0.044 3.956 5 C 0.502 3.498 6 O -0.575 6.575 7 N -0.705 5.705 8 C 0.169 3.831 9 C -0.041 4.041 10 C -0.476 4.476 11 H 0.047 0.953 12 C 0.025 3.975 13 N -0.944 5.944 14 Si 0.929 3.071 15 H -0.266 1.266 16 H -0.305 1.305 17 H -0.243 1.243 18 C -0.149 4.149 19 C -0.195 4.195 20 C 0.014 3.986 21 C -0.198 4.198 22 C -0.173 4.173 23 H 0.048 0.952 24 H 0.081 0.919 25 H 0.052 0.948 26 H 0.087 0.913 27 H 0.054 0.946 28 H 0.088 0.912 29 H 0.118 0.882 30 H 0.410 0.590 31 H 0.030 0.970 32 H 0.055 0.945 33 H 0.264 0.736 34 H 0.105 0.895 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.113 0.887 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.699 -15.963 4.494 19.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.078 4.078 3 N -0.234 5.234 4 C -0.086 4.086 5 C 0.289 3.711 6 O -0.454 6.454 7 N -0.356 5.356 8 C 0.044 3.956 9 C -0.042 4.042 10 C -0.513 4.513 11 H 0.065 0.935 12 C -0.172 4.172 13 N -0.584 5.584 14 Si 0.755 3.245 15 H -0.192 1.192 16 H -0.233 1.233 17 H -0.166 1.166 18 C -0.186 4.186 19 C -0.233 4.233 20 C -0.095 4.095 21 C -0.237 4.237 22 C -0.211 4.211 23 H 0.067 0.933 24 H 0.100 0.900 25 H 0.071 0.929 26 H 0.105 0.895 27 H 0.072 0.928 28 H 0.106 0.894 29 H 0.136 0.864 30 H 0.245 0.755 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.123 0.877 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.116 0.884 38 H 0.112 0.888 39 H 0.131 0.869 40 H 0.120 0.880 41 H 0.114 0.886 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.501 -15.260 5.612 19.355 hybrid contribution -0.135 0.756 -0.497 0.915 sum 10.366 -14.503 5.115 18.546 Atomic orbital electron populations 1.21843 0.94451 1.02571 1.01941 1.22301 0.96276 0.87142 1.02081 1.61448 1.14942 1.17773 1.29238 1.21981 1.04605 0.89765 0.92282 1.21125 0.76762 0.89902 0.83286 1.90651 1.49323 1.76816 1.28650 1.45817 1.66114 1.10162 1.13479 1.20789 0.97091 0.81021 0.96665 1.19475 0.91815 0.99989 0.92925 1.20363 0.91851 1.06988 1.32138 0.93477 1.25696 0.94797 1.00351 0.96406 1.70015 1.07893 1.32565 1.47956 0.86042 0.78869 0.80189 0.79406 1.19176 1.23280 1.16636 1.22890 1.00350 0.98484 0.96875 1.23008 1.02655 0.92683 1.04917 1.22461 0.87835 0.97500 1.01684 1.23669 1.02118 0.95449 1.02452 1.23025 1.03069 1.03717 0.91305 0.93294 0.90030 0.92912 0.89501 0.92765 0.89377 0.86445 0.75451 0.95124 0.92664 0.92738 0.87690 0.89514 0.90435 0.88421 0.88781 0.86866 0.87955 0.88590 0.88711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.97 71.98 0.72 -1.98 16 2 C 0.05 0.89 4.33 86.30 0.37 1.26 16 3 N -0.51 -13.05 4.39 -875.54 -3.84 -16.89 16 4 C 0.04 1.13 5.30 85.56 0.45 1.58 16 5 C 0.50 17.65 7.22 87.66 0.63 18.28 16 6 O -0.57 -24.86 15.08 -3.03 -0.05 -24.91 16 7 N -0.70 -25.13 5.45 -463.06 -2.52 -27.66 16 8 C 0.17 6.89 5.19 86.38 0.45 7.34 16 9 C -0.04 -1.73 0.82 -52.93 -0.04 -1.77 16 10 C -0.48 -25.12 9.29 25.60 0.24 -24.88 16 11 H 0.05 2.71 8.06 -2.91 -0.02 2.69 16 12 C 0.03 1.44 5.47 84.65 0.46 1.90 16 13 N -0.94 -57.72 13.96 21.45 0.30 -57.42 16 14 Si 0.93 44.75 24.77 68.60 1.70 46.45 16 15 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 16 H -0.31 -15.15 7.11 99.48 0.71 -14.45 16 17 H -0.24 -11.06 5.85 99.48 0.58 -10.47 16 18 C -0.15 -5.15 9.96 30.62 0.30 -4.84 16 19 C -0.19 -7.43 7.41 30.62 0.23 -7.21 16 20 C 0.01 0.36 5.21 44.92 0.23 0.60 16 21 C -0.20 -3.49 9.52 30.59 0.29 -3.20 16 22 C -0.17 -3.74 9.99 30.60 0.31 -3.44 16 23 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 25 H 0.05 0.99 6.46 -2.39 -0.02 0.98 16 26 H 0.09 1.45 5.95 -2.38 -0.01 1.43 16 27 H 0.05 0.82 7.90 -2.39 -0.02 0.81 16 28 H 0.09 1.79 8.12 -2.39 -0.02 1.77 16 29 H 0.12 2.75 6.28 -2.39 -0.01 2.74 16 30 H 0.41 13.20 8.44 -92.71 -0.78 12.41 16 31 H 0.03 1.45 7.02 -2.39 -0.02 1.44 16 32 H 0.06 2.08 8.10 -2.38 -0.02 2.06 16 33 H 0.26 15.36 8.31 -92.71 -0.77 14.58 16 34 H 0.10 3.00 8.14 -2.38 -0.02 2.98 16 35 H 0.09 3.04 8.14 -2.38 -0.02 3.02 16 36 H 0.08 3.16 7.00 -2.39 -0.02 3.15 16 37 H 0.10 3.29 8.14 -2.38 -0.02 3.27 16 38 H 0.09 2.78 6.85 -2.39 -0.02 2.77 16 39 H 0.11 1.65 5.90 -2.39 -0.01 1.63 16 40 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 41 H 0.10 2.00 8.14 -2.38 -0.02 1.98 16 42 H 0.09 2.02 7.78 -2.39 -0.02 2.00 16 Total: -1.00 -68.16 332.53 0.33 -67.82 By element: Atomic # 1 Polarization: 28.86 SS G_CDS: 0.10 Total: 28.95 kcal Atomic # 6 Polarization: -21.00 SS G_CDS: 4.65 Total: -16.35 kcal Atomic # 7 Polarization: -95.90 SS G_CDS: -6.06 Total: -101.97 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.05 Total: -24.91 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.70 Total: 46.45 kcal Total: -68.16 0.33 -67.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431175147.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.728 kcal (2) G-P(sol) polarization free energy of solvation -68.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds