Wall clock time and date at job start Mon Mar 30 2020 00:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 N 1.46499 * 109.47200 * 2 1 4 4 C 1.34777 * 120.00084 * 275.22098 * 3 2 1 5 5 O 1.21583 * 120.00409 * 184.40357 * 4 3 2 6 6 N 1.34777 * 119.99863 * 4.40241 * 4 3 2 7 7 C 1.46503 * 119.99989 * 174.99787 * 6 4 3 8 8 C 1.53004 * 109.47005 * 184.87485 * 7 6 4 9 9 C 1.50697 * 115.54801 * 306.10506 * 8 7 6 10 10 H 1.08001 * 119.99702 * 144.20290 * 9 8 7 11 11 C 1.37876 * 120.00489 * 324.20858 * 9 8 7 12 12 N 1.31521 * 119.99509 * 3.30164 * 11 9 8 13 13 Si 1.86799 * 120.00190 * 183.30985 * 11 9 8 14 14 H 1.48496 * 109.47120 * 359.97438 * 13 11 9 15 15 H 1.48506 * 109.47324 * 119.99613 * 13 11 9 16 16 H 1.48506 * 109.46780 * 239.99305 * 13 11 9 17 17 C 1.52999 * 117.49504 * 160.44030 * 8 7 6 18 18 C 1.52998 * 117.49948 * 91.78118 * 8 7 6 19 19 C 1.46499 * 119.99757 * 95.21931 * 3 2 1 20 20 C 1.53781 * 113.61169 * 98.57435 * 19 3 2 21 21 C 1.53781 * 87.08465 * 89.19856 * 20 19 3 22 22 C 1.53780 * 113.68842 * 196.10487 * 19 3 2 23 23 H 1.09001 * 109.46635 * 300.00042 * 1 2 3 24 24 H 1.08998 * 109.47103 * 59.99363 * 1 2 3 25 25 H 1.08993 * 109.46788 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46635 * 239.99958 * 2 1 3 27 27 H 1.08998 * 109.47103 * 120.00637 * 2 1 3 28 28 H 0.97008 * 120.00035 * 354.98946 * 6 4 3 29 29 H 1.09004 * 109.46448 * 304.87129 * 7 6 4 30 30 H 1.08997 * 109.47127 * 64.87234 * 7 6 4 31 31 H 0.97003 * 119.99169 * 185.00698 * 12 11 9 32 32 H 1.08998 * 117.50133 * 359.97438 * 17 8 7 33 33 H 1.09003 * 117.49779 * 145.01636 * 17 8 7 34 34 H 1.08997 * 117.49635 * 214.97623 * 18 8 7 35 35 H 1.09000 * 117.49703 * 359.97348 * 18 8 7 36 36 H 1.09000 * 112.85410 * 327.37481 * 19 3 2 37 37 H 1.09003 * 113.61391 * 334.64744 * 20 19 3 38 38 H 1.09001 * 113.68959 * 203.75912 * 20 19 3 39 39 H 1.08999 * 113.61606 * 139.97790 * 21 20 19 40 40 H 1.08996 * 113.61077 * 270.88309 * 21 20 19 41 41 H 1.09003 * 113.61350 * 156.32807 * 22 19 3 42 42 H 1.09001 * 113.61402 * 25.42283 * 22 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.1430 2.0520 -1.1623 5 8 2.6231 3.1689 -1.1713 6 7 1.7352 1.4845 -2.3148 7 6 1.7684 2.2531 -3.5616 8 6 1.1448 1.4257 -4.6875 9 6 1.7312 0.0517 -4.8858 10 1 1.0938 -0.7708 -5.1750 11 6 3.0813 -0.1554 -4.6980 12 7 3.8463 0.8306 -4.2830 13 14 3.8239 -1.8364 -5.0332 14 1 2.7589 -2.7665 -5.4867 15 1 4.8609 -1.7177 -6.0896 16 1 4.4423 -2.3612 -3.7892 17 6 0.6641 2.1750 -5.9318 18 6 -0.3535 1.5983 -4.9445 19 6 2.3714 2.0333 1.2635 20 6 3.8797 2.0196 1.5634 21 6 3.9648 3.3487 0.7945 22 6 2.4861 3.5632 1.1582 23 1 -0.3632 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3632 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.4198 0.5671 -2.3188 29 1 1.2040 3.1768 -3.4340 30 1 2.8017 2.4906 -3.8146 31 1 4.8063 0.7063 -4.2203 32 1 0.7918 3.2574 -5.9482 33 1 0.7716 1.6740 -6.8939 34 1 -0.9151 0.7180 -5.2573 35 1 -0.8951 2.3009 -4.3112 36 1 1.7570 1.6979 2.0990 37 1 4.4134 1.2009 1.0807 38 1 4.1163 2.1124 2.6233 39 1 4.6367 4.0752 1.2515 40 1 4.1379 3.2244 -0.2744 41 1 2.3403 4.0783 2.1078 42 1 1.8948 3.9907 0.3484 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431189361.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:05 Heat of formation + Delta-G solvation = 42.360560 kcal Electronic energy + Delta-G solvation = -21893.800486 eV Core-core repulsion = 18876.652360 eV Total energy + Delta-G solvation = -3017.148126 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.35065 -37.43565 -36.20046 -35.07036 -32.54337 -32.05050 -29.73293 -26.15331 -25.44891 -25.22172 -24.18395 -22.79351 -21.23585 -20.10158 -19.25333 -18.20877 -17.13528 -16.36007 -15.56399 -15.07701 -14.86004 -14.49299 -14.29030 -13.87796 -13.55986 -13.38787 -13.09238 -12.55627 -12.53821 -12.07964 -11.73505 -11.62120 -11.57127 -11.35739 -11.13394 -10.97299 -10.73089 -10.51398 -10.30847 -10.09629 -10.00789 -9.80069 -9.60825 -9.00058 -8.83844 -8.67179 -8.26528 -8.03019 -7.55438 -5.99272 -4.19531 3.18910 3.29739 3.31861 3.32755 4.05360 4.28685 4.69207 4.97732 5.07102 5.14801 5.22500 5.37233 5.46498 5.49176 5.54840 5.58785 5.79808 5.96706 6.02539 6.05075 6.08441 6.18073 6.33173 6.39016 6.42560 6.57041 6.63801 6.66456 6.71438 6.77733 6.89955 7.03906 7.17355 7.27277 7.30301 7.60983 7.73142 7.88355 8.01711 8.33253 8.77688 9.02540 9.43548 9.59331 10.89248 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.018164 B = 0.007150 C = 0.006567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.136147 B = 3915.306725 C = 4262.548917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.110 3.890 3 N -0.621 5.621 4 C 0.697 3.303 5 O -0.590 6.590 6 N -0.699 5.699 7 C 0.183 3.817 8 C 0.037 3.963 9 C -0.497 4.497 10 H 0.060 0.940 11 C 0.074 3.926 12 N -0.863 5.863 13 Si 0.890 3.110 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.284 1.284 17 C -0.198 4.198 18 C -0.212 4.212 19 C 0.143 3.857 20 C -0.164 4.164 21 C -0.136 4.136 22 C -0.141 4.141 23 H 0.053 0.947 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.395 0.605 29 H 0.017 0.983 30 H 0.109 0.891 31 H 0.261 0.739 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.062 0.938 38 H 0.075 0.925 39 H 0.042 0.958 40 H 0.122 0.878 41 H 0.063 0.937 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.618 -0.799 9.914 10.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.014 4.014 3 N -0.358 5.358 4 C 0.399 3.601 5 O -0.471 6.471 6 N -0.351 5.351 7 C 0.060 3.940 8 C 0.036 3.964 9 C -0.534 4.534 10 H 0.079 0.921 11 C -0.131 4.131 12 N -0.499 5.499 13 Si 0.717 3.283 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.210 1.210 17 C -0.237 4.237 18 C -0.249 4.249 19 C 0.038 3.962 20 C -0.203 4.203 21 C -0.173 4.173 22 C -0.179 4.179 23 H 0.072 0.928 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.096 0.904 27 H 0.091 0.909 28 H 0.230 0.770 29 H 0.035 0.965 30 H 0.127 0.873 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.061 0.939 40 H 0.140 0.860 41 H 0.081 0.919 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.097 0.033 9.965 10.435 hybrid contribution 0.272 -1.469 -0.217 1.510 sum -2.826 -1.436 9.748 10.250 Atomic orbital electron populations 1.22239 0.96297 1.01911 1.02588 1.21390 0.94110 0.83031 1.02858 1.46773 1.70559 1.13571 1.04940 1.15937 0.79369 0.84505 0.80246 1.90695 1.50725 1.20054 1.85648 1.45054 1.67043 1.16851 1.06106 1.20893 1.03086 0.89612 0.80438 1.19253 0.89271 0.95607 0.92292 1.20540 0.93022 0.92479 1.47359 0.92149 1.25005 0.97287 0.96827 0.93939 1.69926 1.04866 1.31058 1.44004 0.86571 0.79344 0.84302 0.78035 1.19753 1.20867 1.21012 1.22935 1.06829 0.97838 0.96112 1.22940 0.94848 1.01993 1.05164 1.21614 0.94892 0.94718 0.85001 1.23510 0.97258 0.99778 0.99789 1.23373 0.95430 0.94996 1.03452 1.23276 0.99405 0.94274 1.00923 0.92776 0.91806 0.91836 0.90432 0.90858 0.76976 0.96477 0.87325 0.92815 0.91478 0.90268 0.90743 0.91422 0.90300 0.91876 0.90657 0.93940 0.86045 0.91880 0.88451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 10.10 37.16 0.38 -1.79 16 2 C 0.11 1.56 5.81 -4.04 -0.02 1.54 16 3 N -0.62 -10.54 2.68 -170.87 -0.46 -11.00 16 4 C 0.70 14.56 7.82 -86.92 -0.68 13.89 16 5 O -0.59 -13.60 9.93 5.29 0.05 -13.55 16 6 N -0.70 -15.10 4.89 -65.22 -0.32 -15.42 16 7 C 0.18 4.35 4.61 -4.04 -0.02 4.33 16 8 C 0.04 0.86 2.07 -155.66 -0.32 0.54 16 9 C -0.50 -12.48 8.27 -34.44 -0.28 -12.76 16 10 H 0.06 1.53 7.82 -52.49 -0.41 1.11 16 11 C 0.07 1.87 5.30 -17.82 -0.09 1.78 16 12 N -0.86 -22.77 10.19 55.43 0.56 -22.20 16 13 Si 0.89 19.89 29.54 -169.99 -5.02 14.87 16 14 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 15 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 C -0.20 -4.34 9.96 -26.69 -0.27 -4.60 16 18 C -0.21 -4.42 9.92 -26.69 -0.26 -4.69 16 19 C 0.14 2.16 4.56 -67.12 -0.31 1.85 16 20 C -0.16 -2.43 7.88 -25.92 -0.20 -2.63 16 21 C -0.14 -2.32 7.29 -25.92 -0.19 -2.51 16 22 C -0.14 -2.27 7.15 -25.92 -0.19 -2.45 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.93 7.69 -51.93 -0.40 0.53 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.08 1.22 6.77 -51.93 -0.35 0.87 16 27 H 0.07 0.88 8.03 -51.93 -0.42 0.46 16 28 H 0.39 8.30 5.40 -40.82 -0.22 8.08 16 29 H 0.02 0.40 8.09 -51.93 -0.42 -0.02 16 30 H 0.11 2.94 5.95 -51.93 -0.31 2.63 16 31 H 0.26 6.78 8.32 -40.82 -0.34 6.44 16 32 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 34 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 35 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.12 2.58 5.33 -52.45 -0.28 2.30 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.10 1.85 5.94 -51.93 -0.31 1.55 16 LS Contribution 328.19 15.07 4.95 4.95 Total: -1.00 -26.89 328.19 -9.60 -36.49 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -6.90 Total: 13.39 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: -2.46 Total: -7.52 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: -0.21 Total: -48.63 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: 0.05 Total: -13.55 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -26.89 -9.60 -36.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431189361.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.849 kcal (2) G-P(sol) polarization free energy of solvation -26.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds