Wall clock time and date at job start Mon Mar 30 2020 00:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 N 1.46499 * 109.47200 * 2 1 4 4 C 1.34777 * 120.00084 * 275.22098 * 3 2 1 5 5 O 1.21583 * 120.00409 * 184.40357 * 4 3 2 6 6 N 1.34777 * 119.99863 * 4.40241 * 4 3 2 7 7 C 1.46503 * 119.99989 * 174.99787 * 6 4 3 8 8 C 1.53004 * 109.47005 * 184.87485 * 7 6 4 9 9 C 1.50697 * 115.54801 * 306.10506 * 8 7 6 10 10 H 1.08001 * 119.99702 * 144.20290 * 9 8 7 11 11 C 1.37876 * 120.00489 * 324.20858 * 9 8 7 12 12 N 1.31521 * 119.99509 * 3.30164 * 11 9 8 13 13 Si 1.86799 * 120.00190 * 183.30985 * 11 9 8 14 14 H 1.48496 * 109.47120 * 359.97438 * 13 11 9 15 15 H 1.48506 * 109.47324 * 119.99613 * 13 11 9 16 16 H 1.48506 * 109.46780 * 239.99305 * 13 11 9 17 17 C 1.52999 * 117.49504 * 160.44030 * 8 7 6 18 18 C 1.52998 * 117.49948 * 91.78118 * 8 7 6 19 19 C 1.46499 * 119.99757 * 95.21931 * 3 2 1 20 20 C 1.53781 * 113.61169 * 98.57435 * 19 3 2 21 21 C 1.53781 * 87.08465 * 89.19856 * 20 19 3 22 22 C 1.53780 * 113.68842 * 196.10487 * 19 3 2 23 23 H 1.09001 * 109.46635 * 300.00042 * 1 2 3 24 24 H 1.08998 * 109.47103 * 59.99363 * 1 2 3 25 25 H 1.08993 * 109.46788 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46635 * 239.99958 * 2 1 3 27 27 H 1.08998 * 109.47103 * 120.00637 * 2 1 3 28 28 H 0.97008 * 120.00035 * 354.98946 * 6 4 3 29 29 H 1.09004 * 109.46448 * 304.87129 * 7 6 4 30 30 H 1.08997 * 109.47127 * 64.87234 * 7 6 4 31 31 H 0.97003 * 119.99169 * 185.00698 * 12 11 9 32 32 H 1.08998 * 117.50133 * 359.97438 * 17 8 7 33 33 H 1.09003 * 117.49779 * 145.01636 * 17 8 7 34 34 H 1.08997 * 117.49635 * 214.97623 * 18 8 7 35 35 H 1.09000 * 117.49703 * 359.97348 * 18 8 7 36 36 H 1.09000 * 112.85410 * 327.37481 * 19 3 2 37 37 H 1.09003 * 113.61391 * 334.64744 * 20 19 3 38 38 H 1.09001 * 113.68959 * 203.75912 * 20 19 3 39 39 H 1.08999 * 113.61606 * 139.97790 * 21 20 19 40 40 H 1.08996 * 113.61077 * 270.88309 * 21 20 19 41 41 H 1.09003 * 113.61350 * 156.32807 * 22 19 3 42 42 H 1.09001 * 113.61402 * 25.42283 * 22 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.1430 2.0520 -1.1623 5 8 2.6231 3.1689 -1.1713 6 7 1.7352 1.4845 -2.3148 7 6 1.7684 2.2531 -3.5616 8 6 1.1448 1.4257 -4.6875 9 6 1.7312 0.0517 -4.8858 10 1 1.0938 -0.7708 -5.1750 11 6 3.0813 -0.1554 -4.6980 12 7 3.8463 0.8306 -4.2830 13 14 3.8239 -1.8364 -5.0332 14 1 2.7589 -2.7665 -5.4867 15 1 4.8609 -1.7177 -6.0896 16 1 4.4423 -2.3612 -3.7892 17 6 0.6641 2.1750 -5.9318 18 6 -0.3535 1.5983 -4.9445 19 6 2.3714 2.0333 1.2635 20 6 3.8797 2.0196 1.5634 21 6 3.9648 3.3487 0.7945 22 6 2.4861 3.5632 1.1582 23 1 -0.3632 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3632 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.4198 0.5671 -2.3188 29 1 1.2040 3.1768 -3.4340 30 1 2.8017 2.4906 -3.8146 31 1 4.8063 0.7063 -4.2203 32 1 0.7918 3.2574 -5.9482 33 1 0.7716 1.6740 -6.8939 34 1 -0.9151 0.7180 -5.2573 35 1 -0.8951 2.3009 -4.3112 36 1 1.7570 1.6979 2.0990 37 1 4.4134 1.2009 1.0807 38 1 4.1163 2.1124 2.6233 39 1 4.6367 4.0752 1.2515 40 1 4.1379 3.2244 -0.2744 41 1 2.3403 4.0783 2.1078 42 1 1.8948 3.9907 0.3484 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431189361.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:05 Heat of formation + Delta-G solvation = 28.686335 kcal Electronic energy + Delta-G solvation = -21894.393444 eV Core-core repulsion = 18876.652360 eV Total energy + Delta-G solvation = -3017.741085 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.78729 -39.07198 -37.80404 -36.44905 -34.31963 -33.86511 -30.93234 -27.91973 -27.28576 -26.44922 -25.59060 -24.01674 -22.96310 -21.55146 -21.09892 -19.74963 -18.53660 -18.06408 -17.04683 -16.74483 -16.51672 -16.07234 -15.69233 -15.52176 -14.84465 -14.73952 -14.68245 -14.20803 -13.99934 -13.51995 -13.32304 -13.07757 -12.96208 -12.86627 -12.64214 -12.56682 -12.27245 -12.09392 -12.01196 -11.50862 -11.40569 -11.28042 -11.09578 -10.86912 -10.67588 -10.33130 -10.10055 -9.51652 -9.17737 -7.92314 -6.18643 1.39993 1.45907 1.54702 1.94572 2.41244 2.46436 3.01024 3.33711 3.66701 3.84881 3.86101 4.05152 4.21194 4.22821 4.29272 4.41076 4.53162 4.56358 4.68896 4.78575 4.83636 4.87029 4.95659 4.96148 4.97466 5.01248 5.12167 5.14454 5.29845 5.35701 5.37343 5.44857 5.54016 5.62851 5.72741 5.98315 6.01672 6.13987 6.25814 6.40790 6.83580 7.40156 7.46397 7.97782 8.93232 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.018164 B = 0.007150 C = 0.006567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.136147 B = 3915.306725 C = 4262.548917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.106 3.894 3 N -0.618 5.618 4 C 0.688 3.312 5 O -0.618 6.618 6 N -0.699 5.699 7 C 0.199 3.801 8 C 0.008 3.992 9 C -0.502 4.502 10 H 0.058 0.942 11 C 0.036 3.964 12 N -0.887 5.887 13 Si 0.947 3.053 14 H -0.265 1.265 15 H -0.288 1.288 16 H -0.284 1.284 17 C -0.199 4.199 18 C -0.187 4.187 19 C 0.139 3.861 20 C -0.148 4.148 21 C -0.148 4.148 22 C -0.137 4.137 23 H 0.067 0.933 24 H 0.038 0.962 25 H 0.086 0.914 26 H 0.056 0.944 27 H 0.105 0.895 28 H 0.397 0.603 29 H 0.009 0.991 30 H 0.071 0.929 31 H 0.255 0.745 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.120 0.880 37 H 0.047 0.953 38 H 0.112 0.888 39 H 0.053 0.947 40 H 0.073 0.927 41 H 0.096 0.904 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.719 -2.193 11.938 13.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.017 4.017 3 N -0.354 5.354 4 C 0.390 3.610 5 O -0.501 6.501 6 N -0.352 5.352 7 C 0.074 3.926 8 C 0.008 3.992 9 C -0.540 4.540 10 H 0.076 0.924 11 C -0.166 4.166 12 N -0.524 5.524 13 Si 0.773 3.227 14 H -0.189 1.189 15 H -0.215 1.215 16 H -0.210 1.210 17 C -0.238 4.238 18 C -0.224 4.224 19 C 0.035 3.965 20 C -0.187 4.187 21 C -0.185 4.185 22 C -0.174 4.174 23 H 0.086 0.914 24 H 0.057 0.943 25 H 0.104 0.896 26 H 0.075 0.925 27 H 0.124 0.876 28 H 0.233 0.767 29 H 0.027 0.973 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.138 0.862 37 H 0.065 0.935 38 H 0.131 0.869 39 H 0.072 0.928 40 H 0.092 0.908 41 H 0.115 0.885 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.221 -1.389 12.011 12.807 hybrid contribution 0.618 -0.976 -0.837 1.427 sum -3.603 -2.366 11.174 11.977 Atomic orbital electron populations 1.22158 0.94764 1.03220 1.01976 1.21594 0.95311 0.81380 1.03398 1.46877 1.69788 1.14450 1.04332 1.16204 0.79194 0.84488 0.81137 1.90718 1.51636 1.21444 1.86297 1.44915 1.67609 1.16751 1.05889 1.20487 1.00612 0.89787 0.81697 1.19301 0.91451 0.95386 0.93097 1.20707 0.93180 0.93078 1.46997 0.92372 1.25593 0.97667 0.99446 0.93917 1.70122 1.04490 1.32612 1.45140 0.85679 0.78445 0.81038 0.77489 1.18934 1.21452 1.20976 1.22958 1.06993 0.98198 0.95647 1.22918 0.93345 1.02204 1.03899 1.21895 0.95882 0.93870 0.84890 1.23464 0.96694 0.97295 1.01260 1.23221 0.96869 0.97382 1.01059 1.23213 0.97669 0.95412 1.01156 0.91416 0.94298 0.89558 0.92536 0.87639 0.76739 0.97288 0.91087 0.93550 0.90778 0.90317 0.89734 0.90120 0.86231 0.93451 0.86946 0.92811 0.90841 0.88531 0.92057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.71 10.10 71.99 0.73 -2.99 16 2 C 0.11 2.80 5.81 86.38 0.50 3.30 16 3 N -0.62 -20.42 2.68 -812.77 -2.18 -22.60 16 4 C 0.69 29.52 7.82 179.05 1.40 30.92 16 5 O -0.62 -29.94 9.93 -3.98 -0.04 -29.98 16 6 N -0.70 -31.14 4.89 -478.52 -2.34 -33.48 16 7 C 0.20 9.80 4.61 86.38 0.40 10.20 16 8 C 0.01 0.40 2.07 -52.93 -0.11 0.29 16 9 C -0.50 -25.31 8.27 25.60 0.21 -25.10 16 10 H 0.06 2.90 7.82 -2.91 -0.02 2.88 16 11 C 0.04 1.81 5.30 84.65 0.45 2.26 16 12 N -0.89 -48.35 10.19 21.45 0.22 -48.13 16 13 Si 0.95 41.08 29.54 68.60 2.03 43.11 16 14 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 15 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 16 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 17 C -0.20 -8.66 9.96 30.62 0.30 -8.35 16 18 C -0.19 -7.57 9.92 30.62 0.30 -7.26 16 19 C 0.14 3.83 4.56 45.52 0.21 4.04 16 20 C -0.15 -4.03 7.88 31.12 0.25 -3.79 16 21 C -0.15 -5.05 7.29 31.12 0.23 -4.83 16 22 C -0.14 -4.23 7.15 31.12 0.22 -4.00 16 23 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.04 1.08 7.69 -2.39 -0.02 1.06 16 25 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.06 1.74 6.77 -2.39 -0.02 1.73 16 27 H 0.11 2.13 8.03 -2.39 -0.02 2.11 16 28 H 0.40 17.01 5.40 -92.70 -0.50 16.51 16 29 H 0.01 0.44 8.09 -2.38 -0.02 0.42 16 30 H 0.07 4.06 5.95 -2.39 -0.01 4.05 16 31 H 0.25 13.71 8.32 -92.71 -0.77 12.94 16 32 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 33 H 0.08 3.39 8.14 -2.39 -0.02 3.37 16 34 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 35 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 36 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.07 3.29 5.33 -10.68 -0.06 3.23 16 41 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.06 2.37 5.94 -2.39 -0.01 2.36 16 Total: -1.00 -60.59 328.19 3.23 -57.36 By element: Atomic # 1 Polarization: 38.58 SS G_CDS: 0.45 Total: 39.04 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: 5.09 Total: -5.31 kcal Atomic # 7 Polarization: -99.92 SS G_CDS: -4.30 Total: -104.22 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -0.04 Total: -29.98 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Total: -60.59 3.23 -57.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431189361.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.048 kcal (2) G-P(sol) polarization free energy of solvation -60.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds