Wall clock time and date at job start Mon Mar 30 2020 01:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46897 * 111.00291 * 2 1 4 4 C 1.46901 * 110.99820 * 123.95370 * 2 1 3 5 5 C 1.50700 * 109.47349 * 66.04707 * 4 2 1 6 6 C 1.33114 * 120.00234 * 127.92740 * 5 4 2 7 7 C 1.46950 * 120.00267 * 19.83093 * 6 5 4 8 8 O 1.21665 * 119.99728 * 5.85208 * 7 6 5 9 9 N 1.34776 * 120.00373 * 185.85796 * 7 6 5 10 10 C 1.36814 * 120.00162 * 190.37147 * 9 7 6 11 11 H 1.08001 * 120.00223 * 16.02003 * 10 9 7 12 12 C 1.39074 * 120.00240 * 196.02198 * 10 9 7 13 13 N 1.31351 * 119.99448 * 24.85768 * 12 10 9 14 14 Si 1.86794 * 120.00313 * 204.85517 * 12 10 9 15 15 H 1.48509 * 109.47065 * 90.00149 * 14 12 10 16 16 H 1.48499 * 109.47452 * 209.99754 * 14 12 10 17 17 H 1.48498 * 109.47157 * 330.00033 * 14 12 10 18 18 C 1.46502 * 119.99681 * 10.36204 * 9 7 6 19 19 C 1.55230 * 110.57937 * 55.90577 * 18 9 7 20 20 C 1.54890 * 102.58956 * 203.33393 * 19 18 9 21 21 C 1.54274 * 104.31101 * 37.92903 * 20 19 18 22 22 C 1.53881 * 106.59613 * 336.32806 * 21 20 19 23 23 H 1.09003 * 109.47134 * 296.05281 * 1 2 3 24 24 H 1.09005 * 109.47076 * 56.04399 * 1 2 3 25 25 H 1.08995 * 109.47265 * 176.04309 * 1 2 3 26 26 H 1.08998 * 109.47541 * 183.95330 * 3 2 1 27 27 H 1.09000 * 109.47208 * 303.95376 * 3 2 1 28 28 H 1.09005 * 109.47550 * 63.95307 * 3 2 1 29 29 H 1.08996 * 109.47361 * 306.04653 * 4 2 1 30 30 H 1.09004 * 109.47376 * 186.04462 * 4 2 1 31 31 H 1.08000 * 119.99429 * 307.93204 * 5 4 2 32 32 H 1.08000 * 119.99915 * 199.82887 * 6 5 4 33 33 H 0.97006 * 119.99851 * 179.97438 * 13 12 10 34 34 H 1.09008 * 110.42996 * 178.48569 * 18 9 7 35 35 H 1.09006 * 110.90231 * 85.04427 * 19 18 9 36 36 H 1.09001 * 110.76851 * 321.56507 * 19 18 9 37 37 H 1.08998 * 110.48625 * 279.18825 * 20 19 18 38 38 H 1.09002 * 110.49123 * 156.67123 * 20 19 18 39 39 H 1.08997 * 110.03037 * 95.60473 * 21 20 19 40 40 H 1.08997 * 110.03253 * 216.99160 * 21 20 19 41 41 H 1.08993 * 110.03112 * 119.28258 * 22 21 20 42 42 H 1.08996 * 110.02803 * 240.66327 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6369 -2.2204 0.9729 6 6 2.5832 -3.1528 1.0564 7 6 3.8576 -2.8488 1.7220 8 8 4.0085 -1.7832 2.2894 9 7 4.8593 -3.7504 1.7039 10 6 5.9607 -3.5652 2.4941 11 1 5.9272 -2.8586 3.3102 12 6 7.1235 -4.2867 2.2464 13 7 7.3635 -4.7521 1.0418 14 14 8.3440 -4.5940 3.6267 15 1 8.0002 -5.8625 4.3182 16 1 9.7142 -4.6932 3.0630 17 1 8.2878 -3.4706 4.5963 18 6 4.7686 -4.9287 0.8381 19 6 4.5408 -4.5052 -0.6378 20 6 3.8837 -5.7656 -1.2531 21 6 2.9569 -6.2950 -0.1391 22 6 3.5196 -5.7627 1.1905 23 1 -0.3633 0.4514 0.9233 24 1 -0.3633 0.5740 -0.8525 25 1 -0.3633 -1.0252 -0.0709 26 1 3.0828 1.3432 -0.0708 27 1 1.5898 1.9163 -0.8524 28 1 1.7044 1.8724 0.9233 29 1 1.5610 -0.3873 2.0628 30 1 3.0797 -0.6612 1.1757 31 1 0.6121 -2.5062 0.7871 32 1 2.4145 -4.1328 0.6349 33 1 8.1747 -5.2551 0.8689 34 1 5.6698 -5.5356 0.9259 35 1 5.4882 -4.2844 -1.1296 36 1 3.8663 -3.6509 -0.6951 37 1 4.6419 -6.5077 -1.5032 38 1 3.3042 -5.5007 -2.1375 39 1 1.9428 -5.9251 -0.2901 40 1 2.9602 -7.3849 -0.1373 41 1 2.7785 -5.1347 1.6848 42 1 3.7957 -6.5945 1.8386 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491887135.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:57 Heat of formation + Delta-G solvation = 17.201525 kcal Electronic energy + Delta-G solvation = -21516.866404 eV Core-core repulsion = 18498.627301 eV Total energy + Delta-G solvation = -3018.239104 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.46987 -37.36545 -36.42184 -34.30218 -32.22553 -31.51978 -28.10237 -27.43595 -27.19255 -26.69238 -24.71286 -22.37791 -20.87097 -19.89362 -19.70711 -17.87409 -17.41251 -15.93335 -15.12141 -15.02881 -14.93868 -14.57911 -14.19622 -13.91645 -13.61206 -13.36780 -12.99949 -12.61328 -12.36201 -12.21618 -12.07205 -11.75412 -11.51199 -11.38139 -11.14331 -11.04234 -10.71571 -10.69776 -10.53756 -10.41151 -10.33284 -10.02726 -10.00083 -9.70020 -8.82668 -8.58383 -8.16430 -7.89684 -7.62708 -6.38378 -3.79799 2.12964 3.16989 3.24444 3.29201 4.10888 4.20952 4.52825 4.87494 5.04827 5.30208 5.35545 5.36898 5.44112 5.47793 5.54304 5.65827 5.75477 5.80052 5.97077 6.03872 6.04992 6.09394 6.12086 6.19652 6.26382 6.35038 6.45283 6.48734 6.56125 6.60432 6.70817 6.88155 7.04190 7.13780 7.20393 7.36367 7.41906 7.44569 7.59650 8.14833 8.53474 9.17373 9.45038 10.04843 10.61075 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.018418 B = 0.006631 C = 0.005372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.851349 B = 4221.866623 C = 5211.232425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.546 5.546 3 C 0.029 3.971 4 C 0.068 3.932 5 C -0.112 4.112 6 C -0.190 4.190 7 C 0.467 3.533 8 O -0.591 6.591 9 N -0.422 5.422 10 C -0.298 4.298 11 H 0.103 0.897 12 C 0.027 3.973 13 N -0.860 5.860 14 Si 0.920 3.080 15 H -0.277 1.277 16 H -0.284 1.284 17 H -0.269 1.269 18 C 0.126 3.874 19 C -0.128 4.128 20 C -0.122 4.122 21 C -0.121 4.121 22 C -0.160 4.160 23 H 0.020 0.980 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.021 0.979 29 H 0.032 0.968 30 H 0.126 0.874 31 H 0.106 0.894 32 H 0.140 0.860 33 H 0.269 0.731 34 H 0.145 0.855 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.076 0.924 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.304 -0.337 -3.947 10.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.270 5.270 3 C -0.119 4.119 4 C -0.058 4.058 5 C -0.134 4.134 6 C -0.211 4.211 7 C 0.259 3.741 8 O -0.479 6.479 9 N -0.137 5.137 10 C -0.426 4.426 11 H 0.120 0.880 12 C -0.176 4.176 13 N -0.500 5.500 14 Si 0.747 3.253 15 H -0.203 1.203 16 H -0.210 1.210 17 H -0.193 1.193 18 C 0.021 3.979 19 C -0.167 4.167 20 C -0.160 4.160 21 C -0.159 4.159 22 C -0.199 4.199 23 H 0.038 0.962 24 H 0.079 0.921 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.040 0.960 29 H 0.050 0.950 30 H 0.144 0.856 31 H 0.124 0.876 32 H 0.157 0.843 33 H 0.080 0.920 34 H 0.161 0.839 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.094 0.906 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.848 -0.169 -4.164 9.780 hybrid contribution 0.176 -0.003 1.199 1.211 sum -8.672 -0.173 -2.965 9.166 Atomic orbital electron populations 1.22416 0.88717 1.01911 0.99697 1.62063 1.07037 1.13441 1.44472 1.22314 1.01217 0.88744 0.99659 1.21756 1.04196 0.90440 0.89406 1.23151 0.97194 0.94415 0.98614 1.23596 0.95249 1.01400 1.00880 1.18124 0.85521 0.84388 0.86068 1.90480 1.83326 1.23579 1.50501 1.43625 1.15699 1.18271 1.36112 1.19753 0.89885 1.23655 1.09281 0.87953 1.25245 0.97612 0.98022 0.96687 1.69867 1.25951 1.35694 1.18443 0.86012 0.78997 0.79109 0.81214 1.20328 1.20994 1.19334 1.22544 0.99459 0.88095 0.87769 1.23006 1.00495 0.96426 0.96736 1.22276 0.98327 0.98233 0.97124 1.22083 0.98620 0.99807 0.95381 1.23111 0.99433 1.00321 0.96987 0.96164 0.92070 0.91469 0.91130 0.91931 0.96022 0.94963 0.85619 0.87632 0.84286 0.92027 0.83876 0.90892 0.91811 0.91847 0.92482 0.92466 0.92382 0.90597 0.92383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.37 60.06 0.56 0.84 16 2 N -0.55 -8.83 5.01 -252.72 -1.27 -10.09 16 3 C 0.03 0.41 9.57 60.06 0.57 0.99 16 4 C 0.07 1.28 4.50 -4.98 -0.02 1.25 16 5 C -0.11 -2.04 9.25 -36.09 -0.33 -2.37 16 6 C -0.19 -3.81 6.19 -37.84 -0.23 -4.04 16 7 C 0.47 11.56 6.63 -12.73 -0.08 11.48 16 8 O -0.59 -16.22 13.19 5.22 0.07 -16.15 16 9 N -0.42 -10.71 2.66 -107.16 -0.29 -11.00 16 10 C -0.30 -8.17 9.28 -15.02 -0.14 -8.30 16 11 H 0.10 2.96 7.49 -52.49 -0.39 2.56 16 12 C 0.03 0.70 4.93 -17.45 -0.09 0.62 16 13 N -0.86 -22.09 10.65 55.50 0.59 -21.50 16 14 Si 0.92 20.18 29.62 -169.99 -5.04 15.15 16 15 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 16 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 17 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 18 C 0.13 2.78 2.51 -66.09 -0.17 2.61 16 19 C -0.13 -2.56 5.99 -24.55 -0.15 -2.71 16 20 C -0.12 -1.93 6.82 -25.07 -0.17 -2.10 16 21 C -0.12 -1.81 6.19 -25.61 -0.16 -1.97 16 22 C -0.16 -2.93 5.63 -25.61 -0.14 -3.07 16 23 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 24 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 25 H 0.07 0.83 6.60 -51.93 -0.34 0.48 16 26 H 0.07 1.06 8.12 -51.93 -0.42 0.64 16 27 H 0.06 0.75 8.12 -51.93 -0.42 0.32 16 28 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.03 0.61 8.12 -51.93 -0.42 0.19 16 30 H 0.13 2.86 5.09 -51.93 -0.26 2.59 16 31 H 0.11 1.59 6.86 -52.49 -0.36 1.23 16 32 H 0.14 2.53 3.06 -52.49 -0.16 2.37 16 33 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 34 H 0.14 3.48 4.92 -51.92 -0.26 3.22 16 35 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 36 H 0.06 1.31 5.52 -51.93 -0.29 1.02 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.77 7.65 -51.93 -0.40 0.38 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.08 1.41 4.93 -51.93 -0.26 1.15 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 319.20 15.07 4.81 4.81 Total: -1.00 -28.96 319.20 -8.16 -37.12 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -6.50 Total: 8.44 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: -0.55 Total: -6.79 kcal Atomic # 7 Polarization: -41.63 SS G_CDS: -0.96 Total: -42.59 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: 0.07 Total: -16.15 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.04 Total: 15.15 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.96 -8.16 -37.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491887135.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.323 kcal (2) G-P(sol) polarization free energy of solvation -28.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds