Wall clock time and date at job start Mon Mar 30 2020 01:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46897 * 111.00291 * 2 1 4 4 C 1.46901 * 110.99820 * 123.95370 * 2 1 3 5 5 C 1.50700 * 109.47349 * 66.04707 * 4 2 1 6 6 C 1.33114 * 120.00234 * 127.92740 * 5 4 2 7 7 C 1.46950 * 120.00267 * 19.83093 * 6 5 4 8 8 O 1.21665 * 119.99728 * 5.85208 * 7 6 5 9 9 N 1.34776 * 120.00373 * 185.85796 * 7 6 5 10 10 C 1.36814 * 120.00162 * 190.37147 * 9 7 6 11 11 H 1.08001 * 120.00223 * 16.02003 * 10 9 7 12 12 C 1.39074 * 120.00240 * 196.02198 * 10 9 7 13 13 N 1.31351 * 119.99448 * 24.85768 * 12 10 9 14 14 Si 1.86794 * 120.00313 * 204.85517 * 12 10 9 15 15 H 1.48509 * 109.47065 * 90.00149 * 14 12 10 16 16 H 1.48499 * 109.47452 * 209.99754 * 14 12 10 17 17 H 1.48498 * 109.47157 * 330.00033 * 14 12 10 18 18 C 1.46502 * 119.99681 * 10.36204 * 9 7 6 19 19 C 1.55230 * 110.57937 * 55.90577 * 18 9 7 20 20 C 1.54890 * 102.58956 * 203.33393 * 19 18 9 21 21 C 1.54274 * 104.31101 * 37.92903 * 20 19 18 22 22 C 1.53881 * 106.59613 * 336.32806 * 21 20 19 23 23 H 1.09003 * 109.47134 * 296.05281 * 1 2 3 24 24 H 1.09005 * 109.47076 * 56.04399 * 1 2 3 25 25 H 1.08995 * 109.47265 * 176.04309 * 1 2 3 26 26 H 1.08998 * 109.47541 * 183.95330 * 3 2 1 27 27 H 1.09000 * 109.47208 * 303.95376 * 3 2 1 28 28 H 1.09005 * 109.47550 * 63.95307 * 3 2 1 29 29 H 1.08996 * 109.47361 * 306.04653 * 4 2 1 30 30 H 1.09004 * 109.47376 * 186.04462 * 4 2 1 31 31 H 1.08000 * 119.99429 * 307.93204 * 5 4 2 32 32 H 1.08000 * 119.99915 * 199.82887 * 6 5 4 33 33 H 0.97006 * 119.99851 * 179.97438 * 13 12 10 34 34 H 1.09008 * 110.42996 * 178.48569 * 18 9 7 35 35 H 1.09006 * 110.90231 * 85.04427 * 19 18 9 36 36 H 1.09001 * 110.76851 * 321.56507 * 19 18 9 37 37 H 1.08998 * 110.48625 * 279.18825 * 20 19 18 38 38 H 1.09002 * 110.49123 * 156.67123 * 20 19 18 39 39 H 1.08997 * 110.03037 * 95.60473 * 21 20 19 40 40 H 1.08997 * 110.03253 * 216.99160 * 21 20 19 41 41 H 1.08993 * 110.03112 * 119.28258 * 22 21 20 42 42 H 1.08996 * 110.02803 * 240.66327 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6369 -2.2204 0.9729 6 6 2.5832 -3.1528 1.0564 7 6 3.8576 -2.8488 1.7220 8 8 4.0085 -1.7832 2.2894 9 7 4.8593 -3.7504 1.7039 10 6 5.9607 -3.5652 2.4941 11 1 5.9272 -2.8586 3.3102 12 6 7.1235 -4.2867 2.2464 13 7 7.3635 -4.7521 1.0418 14 14 8.3440 -4.5940 3.6267 15 1 8.0002 -5.8625 4.3182 16 1 9.7142 -4.6932 3.0630 17 1 8.2878 -3.4706 4.5963 18 6 4.7686 -4.9287 0.8381 19 6 4.5408 -4.5052 -0.6378 20 6 3.8837 -5.7656 -1.2531 21 6 2.9569 -6.2950 -0.1391 22 6 3.5196 -5.7627 1.1905 23 1 -0.3633 0.4514 0.9233 24 1 -0.3633 0.5740 -0.8525 25 1 -0.3633 -1.0252 -0.0709 26 1 3.0828 1.3432 -0.0708 27 1 1.5898 1.9163 -0.8524 28 1 1.7044 1.8724 0.9233 29 1 1.5610 -0.3873 2.0628 30 1 3.0797 -0.6612 1.1757 31 1 0.6121 -2.5062 0.7871 32 1 2.4145 -4.1328 0.6349 33 1 8.1747 -5.2551 0.8689 34 1 5.6698 -5.5356 0.9259 35 1 5.4882 -4.2844 -1.1296 36 1 3.8663 -3.6509 -0.6951 37 1 4.6419 -6.5077 -1.5032 38 1 3.3042 -5.5007 -2.1375 39 1 1.9428 -5.9251 -0.2901 40 1 2.9602 -7.3849 -0.1373 41 1 2.7785 -5.1347 1.6848 42 1 3.7957 -6.5945 1.8386 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491887135.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:56 Heat of formation + Delta-G solvation = -1.139631 kcal Electronic energy + Delta-G solvation = -21517.661736 eV Core-core repulsion = 18498.627301 eV Total energy + Delta-G solvation = -3019.034436 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.19622 -38.78997 -37.98893 -36.08432 -33.79662 -33.44173 -29.54168 -28.88145 -28.45037 -28.17639 -26.51658 -23.88623 -22.33482 -21.48837 -21.09523 -19.57131 -19.22401 -17.64241 -16.74594 -16.50712 -16.26056 -16.12763 -15.82122 -15.41286 -15.28834 -14.90831 -14.51584 -14.11313 -13.98252 -13.57706 -13.35045 -13.28383 -13.14298 -12.76090 -12.73174 -12.47129 -12.24523 -12.18360 -12.11351 -11.99377 -11.84736 -11.77115 -11.40132 -11.25667 -10.63223 -10.19936 -9.92658 -9.55413 -9.21764 -8.34350 -5.85902 0.55772 1.39471 1.41196 1.52467 2.27716 2.43628 3.07295 3.15073 3.27996 3.92577 3.96169 3.98854 4.12152 4.24285 4.30942 4.45467 4.47229 4.63097 4.63900 4.66281 4.76045 4.80914 4.85325 4.92096 4.95085 4.96520 5.02710 5.06243 5.14995 5.20985 5.31333 5.41978 5.48866 5.51275 5.60300 5.71154 5.77592 6.03795 6.18144 6.19663 6.58637 7.19738 7.55217 8.13753 8.62861 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.018418 B = 0.006631 C = 0.005372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.851349 B = 4221.866623 C = 5211.232425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.557 5.557 3 C 0.028 3.972 4 C 0.071 3.929 5 C -0.085 4.085 6 C -0.208 4.208 7 C 0.453 3.547 8 O -0.634 6.634 9 N -0.437 5.437 10 C -0.342 4.342 11 H 0.070 0.930 12 C 0.000 4.000 13 N -0.872 5.872 14 Si 0.983 3.017 15 H -0.264 1.264 16 H -0.273 1.273 17 H -0.278 1.278 18 C 0.117 3.883 19 C -0.126 4.126 20 C -0.112 4.112 21 C -0.111 4.111 22 C -0.156 4.156 23 H 0.025 0.975 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.050 0.950 27 H 0.091 0.909 28 H 0.025 0.975 29 H 0.028 0.972 30 H 0.081 0.919 31 H 0.152 0.848 32 H 0.164 0.836 33 H 0.275 0.725 34 H 0.119 0.881 35 H 0.042 0.958 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.663 -1.696 -5.258 12.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.282 5.282 3 C -0.120 4.120 4 C -0.056 4.056 5 C -0.105 4.105 6 C -0.229 4.229 7 C 0.247 3.753 8 O -0.525 6.525 9 N -0.151 5.151 10 C -0.470 4.470 11 H 0.088 0.912 12 C -0.203 4.203 13 N -0.511 5.511 14 Si 0.807 3.193 15 H -0.189 1.189 16 H -0.198 1.198 17 H -0.203 1.203 18 C 0.013 3.987 19 C -0.164 4.164 20 C -0.149 4.149 21 C -0.149 4.149 22 C -0.194 4.194 23 H 0.043 0.957 24 H 0.102 0.898 25 H 0.096 0.904 26 H 0.069 0.931 27 H 0.110 0.890 28 H 0.044 0.956 29 H 0.046 0.954 30 H 0.099 0.901 31 H 0.169 0.831 32 H 0.181 0.819 33 H 0.086 0.914 34 H 0.136 0.864 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.092 0.908 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.216 -1.556 -5.509 12.592 hybrid contribution 0.897 0.564 1.574 1.898 sum -10.319 -0.991 -3.934 11.088 Atomic orbital electron populations 1.22535 0.86152 1.03199 1.00971 1.62048 1.09357 1.14068 1.42682 1.22363 1.00218 0.88330 1.01123 1.21490 1.01689 0.91871 0.90541 1.23581 0.98688 0.93365 0.94905 1.23469 0.93285 1.03189 1.02946 1.18988 0.86914 0.83656 0.85744 1.90456 1.84425 1.25265 1.52323 1.43859 1.15342 1.19512 1.36428 1.19631 0.91975 1.25264 1.10167 0.91179 1.25947 0.98598 0.97000 0.98722 1.69959 1.26463 1.35246 1.19396 0.85095 0.77103 0.78870 0.78256 1.18950 1.19830 1.20304 1.22628 1.00345 0.87218 0.88499 1.22903 0.99338 0.98472 0.95680 1.22246 0.98633 0.95865 0.98197 1.22072 0.99206 1.01280 0.92328 1.23038 0.97622 0.99581 0.99194 0.95674 0.89815 0.90359 0.93149 0.89033 0.95647 0.95419 0.90107 0.83060 0.81908 0.91444 0.86404 0.93906 0.92503 0.91530 0.89792 0.89915 0.89919 0.90781 0.92360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.37 127.69 1.20 1.62 16 2 N -0.56 -17.14 5.01 -953.48 -4.78 -21.92 16 3 C 0.03 0.77 9.57 127.69 1.22 1.99 16 4 C 0.07 2.67 4.50 85.56 0.38 3.05 16 5 C -0.08 -2.90 9.25 24.53 0.23 -2.68 16 6 C -0.21 -8.22 6.19 23.40 0.14 -8.08 16 7 C 0.45 23.49 6.63 86.53 0.57 24.06 16 8 O -0.63 -37.17 13.19 -4.24 -0.06 -37.22 16 9 N -0.44 -23.26 2.66 -611.16 -1.63 -24.89 16 10 C -0.34 -19.94 9.28 84.12 0.78 -19.16 16 11 H 0.07 4.40 7.49 -2.91 -0.02 4.38 16 12 C 0.00 -0.02 4.93 84.97 0.42 0.40 16 13 N -0.87 -46.10 10.65 21.68 0.23 -45.87 16 14 Si 0.98 42.56 29.62 68.60 2.03 44.59 16 15 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 16 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 17 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 18 C 0.12 5.25 2.51 46.18 0.12 5.36 16 19 C -0.13 -5.03 5.99 32.01 0.19 -4.84 16 20 C -0.11 -3.23 6.82 31.67 0.22 -3.01 16 21 C -0.11 -2.91 6.19 31.32 0.19 -2.71 16 22 C -0.16 -5.50 5.63 31.32 0.18 -5.32 16 23 H 0.02 0.54 8.14 -2.39 -0.02 0.53 16 24 H 0.08 1.53 8.12 -2.38 -0.02 1.51 16 25 H 0.08 1.58 6.60 -2.39 -0.02 1.56 16 26 H 0.05 1.56 8.12 -2.39 -0.02 1.55 16 27 H 0.09 1.98 8.12 -2.39 -0.02 1.96 16 28 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.03 1.06 8.12 -2.39 -0.02 1.04 16 30 H 0.08 3.88 5.09 -2.38 -0.01 3.86 16 31 H 0.15 3.85 6.86 -2.91 -0.02 3.83 16 32 H 0.16 5.57 3.06 -2.91 -0.01 5.56 16 33 H 0.28 13.50 8.31 -92.70 -0.77 12.73 16 34 H 0.12 5.89 4.92 -2.38 -0.01 5.88 16 35 H 0.04 1.92 8.14 -2.38 -0.02 1.90 16 36 H 0.06 2.33 5.52 -2.39 -0.01 2.32 16 37 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.08 1.80 7.65 -2.39 -0.02 1.78 16 40 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.07 2.64 4.93 -2.39 -0.01 2.63 16 42 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -68.32 319.20 2.65 -65.67 By element: Atomic # 1 Polarization: 27.94 SS G_CDS: 1.00 Total: 28.95 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: 5.84 Total: -9.31 kcal Atomic # 7 Polarization: -86.50 SS G_CDS: -6.17 Total: -92.68 kcal Atomic # 8 Polarization: -37.17 SS G_CDS: -0.06 Total: -37.22 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -68.32 2.65 -65.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491887135.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.535 kcal (2) G-P(sol) polarization free energy of solvation -68.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds