Wall clock time and date at job start Mon Mar 30 2020 01:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46907 * 110.99672 * 2 1 4 4 C 1.46901 * 111.00314 * 123.95149 * 2 1 3 5 5 C 1.50701 * 109.47091 * 170.00161 * 4 2 1 6 6 C 1.32987 * 120.00151 * 128.97419 * 5 4 2 7 7 C 1.47103 * 119.99890 * 15.54086 * 6 5 4 8 8 O 1.21619 * 119.99876 * 7.28061 * 7 6 5 9 9 N 1.34772 * 120.00079 * 187.27539 * 7 6 5 10 10 C 1.46927 * 120.63210 * 354.66806 * 9 7 6 11 11 C 1.53622 * 108.54307 * 126.36779 * 10 9 7 12 12 C 1.53036 * 109.24218 * 54.85780 * 11 10 9 13 13 C 1.50705 * 109.44632 * 178.49895 * 12 11 10 14 14 H 1.08002 * 120.00264 * 120.06091 * 13 12 11 15 15 C 1.37882 * 119.99649 * 300.05685 * 13 12 11 16 16 N 1.31509 * 120.00181 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99858 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46952 * 60.00054 * 17 15 13 19 19 H 1.48491 * 109.46936 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46953 * 300.00415 * 17 15 13 21 21 C 1.53036 * 109.53708 * 298.50714 * 12 11 10 22 22 C 1.46930 * 120.63070 * 174.94468 * 9 7 6 23 23 H 1.08999 * 109.47571 * 56.04493 * 1 2 3 24 24 H 1.09004 * 109.46743 * 176.05057 * 1 2 3 25 25 H 1.09007 * 109.46844 * 296.04446 * 1 2 3 26 26 H 1.09000 * 109.46886 * 59.99882 * 3 2 1 27 27 H 1.08999 * 109.46988 * 180.02562 * 3 2 1 28 28 H 1.09006 * 109.47015 * 300.00022 * 3 2 1 29 29 H 1.09000 * 109.47090 * 290.00395 * 4 2 1 30 30 H 1.09000 * 109.46455 * 50.00190 * 4 2 1 31 31 H 1.07997 * 119.99489 * 308.97728 * 5 4 2 32 32 H 1.07999 * 120.00237 * 195.53819 * 6 5 4 33 33 H 1.09004 * 109.58463 * 246.20216 * 10 9 7 34 34 H 1.08998 * 109.58422 * 6.61913 * 10 9 7 35 35 H 1.08998 * 109.63157 * 294.86435 * 11 10 9 36 36 H 1.09000 * 109.43089 * 174.72604 * 11 10 9 37 37 H 1.08997 * 109.46312 * 58.53349 * 12 11 10 38 38 H 0.97004 * 120.00097 * 179.97438 * 16 15 13 39 39 H 1.09001 * 109.50147 * 301.41686 * 21 12 11 40 40 H 1.09002 * 109.49637 * 181.31600 * 21 12 11 41 41 H 1.09001 * 109.58677 * 353.37649 * 22 9 7 42 42 H 1.09004 * 109.58573 * 113.65521 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 3.4819 -0.9524 0.9728 6 6 4.3056 -0.6410 1.9693 7 6 3.7759 -0.4455 3.3277 8 8 2.6104 -0.6967 3.5678 9 7 4.5821 0.0119 4.3060 10 6 6.0175 0.2091 4.0623 11 6 6.3861 1.6486 4.4522 12 6 5.9532 1.9063 5.8972 13 6 6.3457 3.3054 6.2967 14 1 5.5884 4.0123 6.6020 15 6 7.6716 3.6829 6.2724 16 7 8.5936 2.8222 5.9001 17 14 8.1583 5.4169 6.7682 18 1 7.7398 5.6665 8.1710 19 1 9.6311 5.5688 6.6559 20 1 7.4905 6.3940 5.8712 21 6 4.4351 1.7502 6.0123 22 6 4.0434 0.3171 5.6385 23 1 -0.3634 0.5740 -0.8524 24 1 -0.3633 -1.0253 -0.0708 25 1 -0.3633 0.4513 0.9234 26 1 1.6458 1.8948 0.8900 27 1 3.0850 1.3425 -0.0005 28 1 1.6459 1.8949 -0.8900 29 1 1.7976 -0.2247 2.0628 30 1 1.5090 -1.7406 1.1756 31 1 3.8780 -1.3388 0.0454 32 1 5.3635 -0.5317 1.7814 33 1 6.5907 -0.4942 4.6664 34 1 6.2343 0.0480 3.0063 35 1 5.8776 2.3490 3.7896 36 1 7.4643 1.7828 4.3660 37 1 6.4429 1.1895 6.5564 38 1 9.5264 3.0879 5.8827 39 1 3.9450 2.4497 5.3350 40 1 4.1248 1.9567 7.0366 41 1 2.9572 0.2275 5.6228 42 1 4.4569 -0.3791 6.3681 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492451960.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:48 Heat of formation + Delta-G solvation = -6.034531 kcal Electronic energy + Delta-G solvation = -20786.250364 eV Core-core repulsion = 17767.003670 eV Total energy + Delta-G solvation = -3019.246694 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.88790 -37.71001 -36.64771 -33.54480 -33.20085 -31.26169 -30.05887 -27.58480 -27.42364 -26.07132 -23.58626 -22.57264 -21.96290 -21.00532 -19.29809 -17.95875 -17.22180 -16.27373 -15.46669 -15.42082 -15.22175 -14.64231 -14.57656 -14.28516 -13.83077 -13.22079 -13.07022 -12.79587 -12.60335 -12.42338 -12.37825 -12.13078 -11.74406 -11.73542 -11.61041 -11.36797 -11.13820 -10.93900 -10.68105 -10.41549 -10.13220 -9.68826 -9.39338 -9.31242 -9.18430 -8.92190 -8.40135 -8.25050 -7.92435 -6.05608 -4.11970 1.45326 3.27912 3.32817 3.35739 3.47969 3.55675 4.04884 4.38655 4.90247 4.92538 5.12685 5.23297 5.28338 5.38000 5.49280 5.54103 5.66029 5.73001 5.75881 5.76179 5.89559 5.90170 6.04862 6.07999 6.12406 6.24501 6.38143 6.44297 6.47880 6.64329 6.87120 6.96433 7.00111 7.04173 7.12935 7.26051 7.63662 7.89053 7.93569 8.01302 8.37313 8.55503 8.91123 9.53233 10.99795 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.027249 B = 0.004262 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.303453 B = 6567.876504 C = 6825.129375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.550 5.550 3 C 0.023 3.977 4 C 0.047 3.953 5 C -0.059 4.059 6 C -0.216 4.216 7 C 0.539 3.461 8 O -0.559 6.559 9 N -0.594 5.594 10 C 0.100 3.900 11 C -0.123 4.123 12 C 0.049 3.951 13 C -0.514 4.514 14 H 0.054 0.946 15 C 0.062 3.938 16 N -0.892 5.892 17 Si 0.891 3.109 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.278 1.278 21 C -0.123 4.123 22 C 0.112 3.888 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.026 0.974 26 H 0.027 0.973 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.126 0.874 32 H 0.134 0.866 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.039 0.961 36 H 0.104 0.896 37 H 0.027 0.973 38 H 0.261 0.739 39 H 0.051 0.949 40 H 0.060 0.940 41 H 0.077 0.923 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.656 -6.413 -9.708 14.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.275 5.275 3 C -0.125 4.125 4 C -0.079 4.079 5 C -0.079 4.079 6 C -0.237 4.237 7 C 0.331 3.669 8 O -0.441 6.441 9 N -0.325 5.325 10 C -0.022 4.022 11 C -0.162 4.162 12 C 0.030 3.970 13 C -0.552 4.552 14 H 0.072 0.928 15 C -0.139 4.139 16 N -0.531 5.531 17 Si 0.719 3.281 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.161 4.161 22 C -0.010 4.010 23 H 0.084 0.916 24 H 0.085 0.915 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.113 0.887 30 H 0.100 0.900 31 H 0.143 0.857 32 H 0.152 0.848 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.058 0.942 36 H 0.122 0.878 37 H 0.046 0.954 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.095 0.905 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.879 -6.769 -9.994 14.984 hybrid contribution 0.350 1.378 0.928 1.698 sum -8.529 -5.391 -9.066 13.565 Atomic orbital electron populations 1.22327 0.87321 1.02033 1.00432 1.61933 1.07771 1.13923 1.43866 1.22397 1.00902 0.88765 1.00444 1.21948 0.92246 0.99765 0.93917 1.23543 0.95234 0.91330 0.97819 1.22870 1.01274 1.06346 0.93214 1.18629 0.85389 0.77250 0.85678 1.90589 1.17218 1.53414 1.82922 1.48181 1.09714 1.62686 1.11902 1.22228 0.78939 1.00672 1.00322 1.22100 1.04509 0.90593 0.98988 1.18631 0.88755 0.96970 0.92637 1.21171 0.92316 0.97241 1.44436 0.92777 1.24952 0.96611 0.97181 0.95139 1.69821 1.00859 1.34425 1.47970 0.86676 0.77288 0.84992 0.79158 1.20299 1.21279 1.20340 1.22005 1.00544 0.93334 1.00200 1.21694 0.99005 0.97809 0.82535 0.91570 0.91510 0.95509 0.95480 0.91275 0.91633 0.88731 0.90000 0.85665 0.84804 0.91882 0.91111 0.94226 0.87780 0.95448 0.92898 0.93049 0.92134 0.90461 0.92239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.57 60.07 0.57 0.86 16 2 N -0.55 -6.77 5.01 -252.70 -1.27 -8.03 16 3 C 0.02 0.28 9.43 60.07 0.57 0.84 16 4 C 0.05 0.64 4.55 -4.97 -0.02 0.62 16 5 C -0.06 -0.74 8.61 -36.13 -0.31 -1.06 16 6 C -0.22 -3.03 9.32 -37.81 -0.35 -3.38 16 7 C 0.54 9.38 7.42 -12.67 -0.09 9.29 16 8 O -0.56 -10.75 12.75 5.26 0.07 -10.68 16 9 N -0.59 -10.69 2.97 -173.89 -0.52 -11.21 16 10 C 0.10 1.77 6.38 -3.49 -0.02 1.75 16 11 C -0.12 -2.68 5.17 -26.39 -0.14 -2.82 16 12 C 0.05 1.14 2.06 -91.73 -0.19 0.95 16 13 C -0.51 -13.59 8.56 -34.44 -0.29 -13.88 16 14 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 15 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 16 N -0.89 -24.20 11.30 55.43 0.63 -23.57 16 17 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 21 C -0.12 -2.50 5.30 -26.61 -0.14 -2.64 16 22 C 0.11 2.05 6.42 -3.71 -0.02 2.03 16 23 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 25 H 0.03 0.29 8.14 -51.92 -0.42 -0.13 16 26 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.07 0.83 7.17 -51.93 -0.37 0.46 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.10 1.56 4.91 -52.22 -0.26 1.31 16 30 H 0.08 1.08 8.06 -51.93 -0.42 0.66 16 31 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 32 H 0.13 1.65 5.88 -52.49 -0.31 1.34 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.07 1.06 5.31 -51.93 -0.28 0.79 16 35 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.10 2.51 6.03 -51.93 -0.31 2.20 16 37 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 39 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.08 1.40 7.04 -51.93 -0.37 1.04 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 329.01 15.07 4.96 4.96 Total: -1.00 -28.34 329.01 -8.62 -36.95 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -6.92 Total: 1.79 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -0.54 Total: -5.88 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: -1.16 Total: -42.81 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.07 Total: -10.68 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.34 -8.62 -36.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492451960.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.920 kcal (2) G-P(sol) polarization free energy of solvation -28.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds