Wall clock time and date at job start Mon Mar 30 2020 01:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46907 * 110.99672 * 2 1 4 4 C 1.46901 * 111.00314 * 123.95149 * 2 1 3 5 5 C 1.50701 * 109.47091 * 170.00161 * 4 2 1 6 6 C 1.32987 * 120.00151 * 128.97419 * 5 4 2 7 7 C 1.47103 * 119.99890 * 15.54086 * 6 5 4 8 8 O 1.21619 * 119.99876 * 7.28061 * 7 6 5 9 9 N 1.34772 * 120.00079 * 187.27539 * 7 6 5 10 10 C 1.46927 * 120.63210 * 354.66806 * 9 7 6 11 11 C 1.53622 * 108.54307 * 126.36779 * 10 9 7 12 12 C 1.53036 * 109.24218 * 54.85780 * 11 10 9 13 13 C 1.50705 * 109.44632 * 178.49895 * 12 11 10 14 14 H 1.08002 * 120.00264 * 120.06091 * 13 12 11 15 15 C 1.37882 * 119.99649 * 300.05685 * 13 12 11 16 16 N 1.31509 * 120.00181 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99858 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46952 * 60.00054 * 17 15 13 19 19 H 1.48491 * 109.46936 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46953 * 300.00415 * 17 15 13 21 21 C 1.53036 * 109.53708 * 298.50714 * 12 11 10 22 22 C 1.46930 * 120.63070 * 174.94468 * 9 7 6 23 23 H 1.08999 * 109.47571 * 56.04493 * 1 2 3 24 24 H 1.09004 * 109.46743 * 176.05057 * 1 2 3 25 25 H 1.09007 * 109.46844 * 296.04446 * 1 2 3 26 26 H 1.09000 * 109.46886 * 59.99882 * 3 2 1 27 27 H 1.08999 * 109.46988 * 180.02562 * 3 2 1 28 28 H 1.09006 * 109.47015 * 300.00022 * 3 2 1 29 29 H 1.09000 * 109.47090 * 290.00395 * 4 2 1 30 30 H 1.09000 * 109.46455 * 50.00190 * 4 2 1 31 31 H 1.07997 * 119.99489 * 308.97728 * 5 4 2 32 32 H 1.07999 * 120.00237 * 195.53819 * 6 5 4 33 33 H 1.09004 * 109.58463 * 246.20216 * 10 9 7 34 34 H 1.08998 * 109.58422 * 6.61913 * 10 9 7 35 35 H 1.08998 * 109.63157 * 294.86435 * 11 10 9 36 36 H 1.09000 * 109.43089 * 174.72604 * 11 10 9 37 37 H 1.08997 * 109.46312 * 58.53349 * 12 11 10 38 38 H 0.97004 * 120.00097 * 179.97438 * 16 15 13 39 39 H 1.09001 * 109.50147 * 301.41686 * 21 12 11 40 40 H 1.09002 * 109.49637 * 181.31600 * 21 12 11 41 41 H 1.09001 * 109.58677 * 353.37649 * 22 9 7 42 42 H 1.09004 * 109.58573 * 113.65521 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 3.4819 -0.9524 0.9728 6 6 4.3056 -0.6410 1.9693 7 6 3.7759 -0.4455 3.3277 8 8 2.6104 -0.6967 3.5678 9 7 4.5821 0.0119 4.3060 10 6 6.0175 0.2091 4.0623 11 6 6.3861 1.6486 4.4522 12 6 5.9532 1.9063 5.8972 13 6 6.3457 3.3054 6.2967 14 1 5.5884 4.0123 6.6020 15 6 7.6716 3.6829 6.2724 16 7 8.5936 2.8222 5.9001 17 14 8.1583 5.4169 6.7682 18 1 7.7398 5.6665 8.1710 19 1 9.6311 5.5688 6.6559 20 1 7.4905 6.3940 5.8712 21 6 4.4351 1.7502 6.0123 22 6 4.0434 0.3171 5.6385 23 1 -0.3634 0.5740 -0.8524 24 1 -0.3633 -1.0253 -0.0708 25 1 -0.3633 0.4513 0.9234 26 1 1.6458 1.8948 0.8900 27 1 3.0850 1.3425 -0.0005 28 1 1.6459 1.8949 -0.8900 29 1 1.7976 -0.2247 2.0628 30 1 1.5090 -1.7406 1.1756 31 1 3.8780 -1.3388 0.0454 32 1 5.3635 -0.5317 1.7814 33 1 6.5907 -0.4942 4.6664 34 1 6.2343 0.0480 3.0063 35 1 5.8776 2.3490 3.7896 36 1 7.4643 1.7828 4.3660 37 1 6.4429 1.1895 6.5564 38 1 9.5264 3.0879 5.8827 39 1 3.9450 2.4497 5.3350 40 1 4.1248 1.9567 7.0366 41 1 2.9572 0.2275 5.6228 42 1 4.4569 -0.3791 6.3681 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492451960.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:48 Heat of formation + Delta-G solvation = -22.970926 kcal Electronic energy + Delta-G solvation = -20786.984782 eV Core-core repulsion = 17767.003670 eV Total energy + Delta-G solvation = -3019.981112 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.25810 -38.96283 -37.97423 -35.33583 -34.32845 -33.00231 -31.66583 -28.69958 -28.47376 -27.67420 -25.12905 -24.13527 -23.20373 -22.26530 -20.85996 -19.37103 -18.64954 -18.09755 -16.76350 -16.58783 -16.43343 -16.25742 -15.93311 -15.46344 -15.02328 -14.81428 -14.65139 -14.38278 -14.01280 -13.92975 -13.38853 -13.28664 -13.21177 -13.01830 -12.81912 -12.65478 -12.57204 -12.48668 -12.26787 -12.14116 -11.93961 -11.47791 -11.02260 -10.91183 -10.61911 -10.42655 -10.31592 -9.49970 -9.20195 -8.07899 -6.21409 0.34645 1.42688 1.43306 1.50653 2.13816 2.25918 2.44105 3.09038 3.18489 3.66958 3.89327 4.14805 4.23672 4.28199 4.33633 4.34970 4.47390 4.49652 4.54611 4.59550 4.64093 4.74652 4.75390 4.85792 4.94572 4.96847 4.97709 4.98448 5.17907 5.24183 5.30771 5.41880 5.46232 5.58995 5.65738 5.98224 6.01820 6.04418 6.13462 6.38871 6.55888 6.87565 7.20003 7.46271 8.95214 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.027249 B = 0.004262 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.303453 B = 6567.876504 C = 6825.129375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.550 5.550 3 C 0.023 3.977 4 C 0.047 3.953 5 C -0.037 4.037 6 C -0.231 4.231 7 C 0.534 3.466 8 O -0.581 6.581 9 N -0.601 5.601 10 C 0.112 3.888 11 C -0.114 4.114 12 C 0.045 3.955 13 C -0.538 4.538 14 H 0.046 0.954 15 C 0.020 3.980 16 N -0.911 5.911 17 Si 0.948 3.052 18 H -0.275 1.275 19 H -0.282 1.282 20 H -0.275 1.275 21 C -0.112 4.112 22 C 0.118 3.882 23 H 0.083 0.917 24 H 0.076 0.924 25 H 0.015 0.985 26 H 0.009 0.991 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.064 0.936 30 H 0.086 0.914 31 H 0.158 0.842 32 H 0.155 0.845 33 H 0.066 0.934 34 H 0.104 0.896 35 H 0.027 0.973 36 H 0.080 0.920 37 H 0.003 0.997 38 H 0.262 0.738 39 H 0.040 0.960 40 H 0.062 0.938 41 H 0.079 0.921 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.820 -6.854 -11.388 15.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.274 5.274 3 C -0.125 4.125 4 C -0.080 4.080 5 C -0.057 4.057 6 C -0.252 4.252 7 C 0.327 3.673 8 O -0.465 6.465 9 N -0.332 5.332 10 C -0.010 4.010 11 C -0.153 4.153 12 C 0.027 3.973 13 C -0.576 4.576 14 H 0.064 0.936 15 C -0.179 4.179 16 N -0.550 5.550 17 Si 0.774 3.226 18 H -0.200 1.200 19 H -0.207 1.207 20 H -0.200 1.200 21 C -0.150 4.150 22 C -0.005 4.005 23 H 0.102 0.898 24 H 0.095 0.905 25 H 0.034 0.966 26 H 0.028 0.972 27 H 0.086 0.914 28 H 0.103 0.897 29 H 0.082 0.918 30 H 0.104 0.896 31 H 0.175 0.825 32 H 0.173 0.827 33 H 0.084 0.916 34 H 0.122 0.878 35 H 0.046 0.954 36 H 0.098 0.902 37 H 0.021 0.979 38 H 0.071 0.929 39 H 0.059 0.941 40 H 0.081 0.919 41 H 0.097 0.903 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.052 -7.213 -11.680 16.443 hybrid contribution 0.313 1.517 1.428 2.107 sum -8.739 -5.696 -10.251 14.625 Atomic orbital electron populations 1.22423 0.86260 1.02990 1.00651 1.62009 1.08817 1.13890 1.42682 1.22434 1.00853 0.88649 1.00574 1.21846 0.93290 0.99682 0.93133 1.23807 0.94424 0.89017 0.98477 1.22855 1.02470 1.08330 0.91543 1.19215 0.84959 0.76410 0.86689 1.90596 1.18173 1.54292 1.83472 1.48217 1.09849 1.63236 1.11895 1.22096 0.78854 0.97697 1.02363 1.21860 1.02658 0.93233 0.97514 1.18606 0.90491 0.94958 0.93276 1.21519 0.92584 0.98578 1.44927 0.93577 1.25614 0.96630 1.00523 0.95175 1.69932 1.00973 1.35771 1.48310 0.85774 0.77067 0.80976 0.78779 1.20047 1.20718 1.20049 1.21843 0.98292 0.94716 1.00184 1.21554 0.99152 0.96379 0.83411 0.89783 0.90487 0.96611 0.97212 0.91400 0.89664 0.91825 0.89600 0.82489 0.82721 0.91607 0.87817 0.95373 0.90173 0.97883 0.92861 0.94132 0.91892 0.90284 0.91418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 9.57 127.69 1.22 1.69 16 2 N -0.55 -12.38 5.01 -953.41 -4.78 -17.16 16 3 C 0.02 0.51 9.43 127.69 1.20 1.71 16 4 C 0.05 1.20 4.55 85.56 0.39 1.59 16 5 C -0.04 -0.84 8.61 24.52 0.21 -0.62 16 6 C -0.23 -5.93 9.32 23.43 0.22 -5.71 16 7 C 0.53 17.98 7.42 86.57 0.64 18.62 16 8 O -0.58 -22.12 12.75 -4.09 -0.05 -22.17 16 9 N -0.60 -21.15 2.97 -822.32 -2.44 -23.59 16 10 C 0.11 3.83 6.38 86.51 0.55 4.38 16 11 C -0.11 -4.99 5.17 30.82 0.16 -4.83 16 12 C 0.05 2.17 2.06 -11.51 -0.02 2.15 16 13 C -0.54 -29.00 8.56 25.60 0.22 -28.78 16 14 H 0.05 2.49 7.74 -2.91 -0.02 2.46 16 15 C 0.02 1.06 5.30 84.66 0.45 1.51 16 16 N -0.91 -49.89 11.30 21.45 0.24 -49.65 16 17 Si 0.95 42.56 29.54 68.60 2.03 44.59 16 18 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 19 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 20 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 21 C -0.11 -4.64 5.30 30.67 0.16 -4.48 16 22 C 0.12 4.30 6.42 86.36 0.55 4.85 16 23 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.08 1.30 8.12 -2.38 -0.02 1.28 16 25 H 0.02 0.33 8.14 -2.38 -0.02 0.31 16 26 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 27 H 0.07 1.50 7.17 -2.39 -0.02 1.48 16 28 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 29 H 0.06 2.08 4.91 -6.98 -0.03 2.05 16 30 H 0.09 2.11 8.06 -2.39 -0.02 2.10 16 31 H 0.16 2.59 8.06 -2.91 -0.02 2.57 16 32 H 0.16 3.28 5.88 -2.91 -0.02 3.26 16 33 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 34 H 0.10 2.86 5.31 -2.39 -0.01 2.85 16 35 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.08 3.92 6.03 -2.39 -0.01 3.91 16 37 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 38 H 0.26 13.73 8.31 -92.71 -0.77 12.96 16 39 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 41 H 0.08 2.87 7.04 -2.39 -0.02 2.85 16 42 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -61.15 329.01 1.92 -59.23 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 0.96 Total: 16.66 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: 5.96 Total: -7.92 kcal Atomic # 7 Polarization: -83.42 SS G_CDS: -6.97 Total: -90.39 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.05 Total: -22.17 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -61.15 1.92 -59.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492451960.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.258 kcal (2) G-P(sol) polarization free energy of solvation -61.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds