Wall clock time and date at job start Mon Mar 30 2020 00:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46499 * 109.46944 * 2 1 4 4 C 1.37098 * 120.00192 * 89.24146 * 3 2 1 5 5 H 1.08001 * 120.00129 * 176.75217 * 4 3 2 6 6 C 1.38951 * 120.00005 * 356.75590 * 4 3 2 7 7 N 1.31415 * 119.99922 * 334.31194 * 6 4 3 8 8 Si 1.86792 * 120.00262 * 154.31478 * 6 4 3 9 9 H 1.48498 * 109.47180 * 59.99533 * 8 6 4 10 10 H 1.48496 * 109.47715 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46940 * 299.99926 * 8 6 4 12 12 C 1.34781 * 119.99795 * 269.24162 * 3 2 1 13 13 O 1.21287 * 119.99632 * 2.64769 * 12 3 2 14 14 C 1.50702 * 119.99883 * 182.65171 * 12 3 2 15 15 C 1.53122 * 109.57241 * 88.58224 * 14 12 3 16 16 C 1.53039 * 109.27530 * 177.60237 * 15 14 12 17 17 N 1.46852 * 109.51196 * 300.80255 * 16 15 14 18 18 C 1.46896 * 110.99800 * 185.84522 * 17 16 15 19 19 C 1.53002 * 117.50310 * 248.62482 * 18 17 16 20 20 C 1.53001 * 117.49966 * 179.97438 * 18 17 16 21 21 C 1.46849 * 111.19662 * 61.75159 * 17 16 15 22 22 C 1.53041 * 109.52019 * 298.25393 * 21 17 16 23 23 H 1.09003 * 109.46829 * 60.00194 * 1 2 3 24 24 H 1.09005 * 109.46873 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47353 * 300.00237 * 1 2 3 26 26 H 1.08996 * 109.47123 * 239.99375 * 2 1 3 27 27 H 1.09003 * 109.46829 * 119.99806 * 2 1 3 28 28 H 0.97000 * 119.99865 * 180.02562 * 7 6 4 29 29 H 1.08999 * 109.51865 * 328.41416 * 14 12 3 30 30 H 1.09001 * 109.51432 * 57.65370 * 15 14 12 31 31 H 1.09000 * 109.49308 * 297.53492 * 15 14 12 32 32 H 1.09003 * 109.45869 * 180.79598 * 16 15 14 33 33 H 1.09000 * 109.46192 * 60.81482 * 16 15 14 34 34 H 1.09007 * 115.55233 * 34.33365 * 18 17 16 35 35 H 1.09004 * 117.49154 * 359.97438 * 19 18 17 36 36 H 1.08991 * 117.50138 * 145.02123 * 19 18 17 37 37 H 1.09002 * 117.49960 * 214.98239 * 20 18 17 38 38 H 1.08999 * 117.49693 * 0.02562 * 20 18 17 39 39 H 1.08999 * 109.46025 * 58.27306 * 21 17 16 40 40 H 1.09004 * 109.45973 * 178.25216 * 21 17 16 41 41 H 1.09005 * 109.50025 * 179.12211 * 22 21 17 42 42 H 1.08995 * 109.50532 * 299.19692 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2320 2.0328 1.1872 5 1 2.6415 3.0322 1.1886 6 6 1.9218 1.4074 2.3886 7 7 1.0023 0.4692 2.4227 8 14 2.8118 1.9002 3.9552 9 1 2.5728 3.3402 4.2281 10 1 2.3021 1.0895 5.0901 11 1 4.2686 1.6623 3.7926 12 6 2.2575 2.0114 -1.1672 13 8 2.0231 1.4520 -2.2175 14 6 2.8164 3.4110 -1.1671 15 6 4.3463 3.3524 -1.1457 16 6 4.9072 4.7751 -1.2061 17 7 4.4420 5.4340 -2.4333 18 6 5.0714 6.7515 -2.5944 19 6 4.1770 7.9843 -2.4490 20 6 4.6909 7.5699 -3.8298 21 6 2.9778 5.5441 -2.4545 22 6 2.3594 4.1444 -2.4311 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 0.7855 0.0328 3.2614 29 1 2.4597 3.9455 -0.2866 30 1 4.7010 2.7845 -2.0057 31 1 4.6790 2.8688 -0.2272 32 1 5.9966 4.7362 -1.2053 33 1 4.5631 5.3383 -0.3386 34 1 6.0980 6.8291 -2.2362 35 1 3.1214 7.8176 -2.2342 36 1 4.6149 8.8731 -1.9950 37 1 5.4668 8.1863 -4.2838 38 1 3.9732 7.1309 -4.5228 39 1 2.6431 6.1038 -1.5812 40 1 2.6658 6.0637 -3.3606 41 1 1.2724 4.2268 -2.4311 42 1 2.6822 3.5891 -3.3116 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495098323.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:53 Heat of formation + Delta-G solvation = 5.826360 kcal Electronic energy + Delta-G solvation = -21396.079067 eV Core-core repulsion = 18377.346700 eV Total energy + Delta-G solvation = -3018.732368 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.70070 -38.38346 -35.81561 -34.84705 -31.58451 -31.46804 -30.52991 -29.41005 -25.13648 -24.61298 -23.00578 -22.44763 -21.89686 -20.59315 -19.31280 -18.83887 -17.02320 -16.33517 -16.01448 -15.32152 -14.43651 -14.38662 -14.10034 -14.00296 -13.73291 -13.08992 -13.03139 -12.73786 -12.29393 -12.09743 -11.83890 -11.69299 -11.54163 -11.31271 -11.13124 -11.01675 -10.76784 -10.68495 -10.58213 -10.46490 -10.41495 -10.24244 -9.90288 -9.85373 -9.59885 -8.84025 -8.21424 -7.99217 -7.79997 -6.37839 -3.82940 3.08984 3.19417 3.20927 3.68068 3.91468 4.06022 4.08036 4.75793 4.81867 4.89100 4.98296 4.99903 5.14529 5.38055 5.55675 5.58827 5.59575 5.69527 5.73631 5.85531 5.93317 5.99161 6.06453 6.11246 6.18531 6.39028 6.42692 6.50695 6.68862 6.73946 6.81247 6.91119 6.95727 7.09124 7.24816 7.27766 7.35345 7.45971 7.75608 7.88425 8.45897 9.08760 9.58937 9.99822 10.58215 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.022692 B = 0.005755 C = 0.004908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.645562 B = 4863.905760 C = 5703.511664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.135 3.865 3 N -0.440 5.440 4 C -0.336 4.336 5 H 0.101 0.899 6 C 0.038 3.962 7 N -0.852 5.852 8 Si 0.911 3.089 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.274 1.274 12 C 0.457 3.543 13 O -0.611 6.611 14 C -0.091 4.091 15 C -0.101 4.101 16 C 0.062 3.938 17 N -0.505 5.505 18 C 0.026 3.974 19 C -0.224 4.224 20 C -0.174 4.174 21 C 0.055 3.945 22 C -0.096 4.096 23 H 0.021 0.979 24 H 0.030 0.970 25 H 0.094 0.906 26 H 0.037 0.963 27 H 0.089 0.911 28 H 0.268 0.732 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.036 0.964 34 H 0.116 0.884 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.036 0.964 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.753 10.092 -3.785 12.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.012 3.988 3 N -0.157 5.157 4 C -0.464 4.464 5 H 0.119 0.881 6 C -0.167 4.167 7 N -0.490 5.490 8 Si 0.737 3.263 9 H -0.200 1.200 10 H -0.209 1.209 11 H -0.199 1.199 12 C 0.246 3.754 13 O -0.499 6.499 14 C -0.113 4.113 15 C -0.139 4.139 16 C -0.066 4.066 17 N -0.228 5.228 18 C -0.084 4.084 19 C -0.264 4.264 20 C -0.212 4.212 21 C -0.073 4.073 22 C -0.134 4.134 23 H 0.040 0.960 24 H 0.049 0.951 25 H 0.112 0.888 26 H 0.055 0.945 27 H 0.107 0.893 28 H 0.078 0.922 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.054 0.946 34 H 0.134 0.866 35 H 0.117 0.883 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.054 0.946 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.664 9.320 -4.491 11.794 hybrid contribution 0.048 0.781 1.670 1.844 sum 5.712 10.101 -2.821 11.942 Atomic orbital electron populations 1.22077 0.96807 0.99352 1.01760 1.21209 0.94546 0.83150 0.99893 1.43878 1.55313 1.11690 1.04815 1.19629 1.42529 1.01489 0.82712 0.88124 1.25160 0.95477 0.96880 0.99202 1.70200 1.25439 1.26163 1.27239 0.86256 0.80324 0.78612 0.81091 1.19987 1.20945 1.19908 1.19905 0.83983 0.87927 0.83626 1.90506 1.59383 1.68381 1.31592 1.21079 0.95886 0.95485 0.98815 1.21455 0.94211 0.95321 1.02924 1.22107 0.99543 0.95227 0.89698 1.61815 1.06826 1.16941 1.37190 1.22657 0.97952 0.85602 1.02166 1.23561 1.01283 1.00291 1.01232 1.23050 1.03796 1.03044 0.91304 1.22239 0.86830 0.97926 1.00264 1.21407 0.99401 0.93752 0.98882 0.95976 0.95080 0.88795 0.94470 0.89250 0.92160 0.89770 0.91151 0.90495 0.90895 0.94615 0.86574 0.88272 0.89128 0.88762 0.88577 0.94584 0.91012 0.91783 0.90329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 9.66 37.16 0.36 -3.03 16 2 C 0.13 3.37 5.35 -4.04 -0.02 3.35 16 3 N -0.44 -11.11 2.62 -114.81 -0.30 -11.41 16 4 C -0.34 -8.31 9.21 -14.93 -0.14 -8.45 16 5 H 0.10 2.35 5.88 -52.49 -0.31 2.04 16 6 C 0.04 0.91 4.97 -17.47 -0.09 0.83 16 7 N -0.85 -21.30 8.13 55.50 0.45 -20.84 16 8 Si 0.91 18.91 29.62 -169.99 -5.04 13.87 16 9 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 10 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 11 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 12 C 0.46 11.16 6.72 -10.98 -0.07 11.09 16 13 O -0.61 -16.53 15.70 5.55 0.09 -16.44 16 14 C -0.09 -1.81 1.84 -91.65 -0.17 -1.98 16 15 C -0.10 -1.77 5.36 -26.65 -0.14 -1.91 16 16 C 0.06 0.90 5.44 -3.83 -0.02 0.88 16 17 N -0.51 -7.22 4.88 -226.68 -1.11 -8.33 16 18 C 0.03 0.31 6.10 -67.71 -0.41 -0.11 16 19 C -0.22 -2.38 9.58 -26.70 -0.26 -2.63 16 20 C -0.17 -1.81 9.94 -26.70 -0.27 -2.08 16 21 C 0.05 0.80 4.12 -3.83 -0.02 0.79 16 22 C -0.10 -1.72 5.00 -26.65 -0.13 -1.85 16 23 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.09 2.39 6.02 -51.93 -0.31 2.08 16 26 H 0.04 0.93 7.44 -51.93 -0.39 0.55 16 27 H 0.09 2.29 5.99 -51.93 -0.31 1.97 16 28 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 29 H 0.08 1.69 6.20 -51.93 -0.32 1.37 16 30 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 32 H 0.07 0.94 8.07 -51.93 -0.42 0.52 16 33 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.12 1.23 8.04 -51.93 -0.42 0.81 16 35 H 0.10 1.11 5.97 -51.93 -0.31 0.80 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.10 1.06 7.23 -51.93 -0.38 0.68 16 39 H 0.04 0.52 7.12 -51.93 -0.37 0.15 16 40 H 0.07 0.96 6.43 -51.93 -0.33 0.63 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.08 1.54 7.78 -51.93 -0.40 1.13 16 LS Contribution 321.16 15.07 4.84 4.84 Total: -1.00 -27.63 321.16 -9.23 -36.86 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -6.79 Total: 6.57 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -1.38 Total: -5.11 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: -0.96 Total: -40.59 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: 0.09 Total: -16.44 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.04 Total: 13.87 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -27.63 -9.23 -36.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495098323.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.687 kcal (2) G-P(sol) polarization free energy of solvation -27.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds