Wall clock time and date at job start Mon Mar 30 2020 00:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46499 * 109.46944 * 2 1 4 4 C 1.37098 * 120.00192 * 89.24146 * 3 2 1 5 5 H 1.08001 * 120.00129 * 176.75217 * 4 3 2 6 6 C 1.38951 * 120.00005 * 356.75590 * 4 3 2 7 7 N 1.31415 * 119.99922 * 334.31194 * 6 4 3 8 8 Si 1.86792 * 120.00262 * 154.31478 * 6 4 3 9 9 H 1.48498 * 109.47180 * 59.99533 * 8 6 4 10 10 H 1.48496 * 109.47715 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46940 * 299.99926 * 8 6 4 12 12 C 1.34781 * 119.99795 * 269.24162 * 3 2 1 13 13 O 1.21287 * 119.99632 * 2.64769 * 12 3 2 14 14 C 1.50702 * 119.99883 * 182.65171 * 12 3 2 15 15 C 1.53122 * 109.57241 * 88.58224 * 14 12 3 16 16 C 1.53039 * 109.27530 * 177.60237 * 15 14 12 17 17 N 1.46852 * 109.51196 * 300.80255 * 16 15 14 18 18 C 1.46896 * 110.99800 * 185.84522 * 17 16 15 19 19 C 1.53002 * 117.50310 * 248.62482 * 18 17 16 20 20 C 1.53001 * 117.49966 * 179.97438 * 18 17 16 21 21 C 1.46849 * 111.19662 * 61.75159 * 17 16 15 22 22 C 1.53041 * 109.52019 * 298.25393 * 21 17 16 23 23 H 1.09003 * 109.46829 * 60.00194 * 1 2 3 24 24 H 1.09005 * 109.46873 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47353 * 300.00237 * 1 2 3 26 26 H 1.08996 * 109.47123 * 239.99375 * 2 1 3 27 27 H 1.09003 * 109.46829 * 119.99806 * 2 1 3 28 28 H 0.97000 * 119.99865 * 180.02562 * 7 6 4 29 29 H 1.08999 * 109.51865 * 328.41416 * 14 12 3 30 30 H 1.09001 * 109.51432 * 57.65370 * 15 14 12 31 31 H 1.09000 * 109.49308 * 297.53492 * 15 14 12 32 32 H 1.09003 * 109.45869 * 180.79598 * 16 15 14 33 33 H 1.09000 * 109.46192 * 60.81482 * 16 15 14 34 34 H 1.09007 * 115.55233 * 34.33365 * 18 17 16 35 35 H 1.09004 * 117.49154 * 359.97438 * 19 18 17 36 36 H 1.08991 * 117.50138 * 145.02123 * 19 18 17 37 37 H 1.09002 * 117.49960 * 214.98239 * 20 18 17 38 38 H 1.08999 * 117.49693 * 0.02562 * 20 18 17 39 39 H 1.08999 * 109.46025 * 58.27306 * 21 17 16 40 40 H 1.09004 * 109.45973 * 178.25216 * 21 17 16 41 41 H 1.09005 * 109.50025 * 179.12211 * 22 21 17 42 42 H 1.08995 * 109.50532 * 299.19692 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2320 2.0328 1.1872 5 1 2.6415 3.0322 1.1886 6 6 1.9218 1.4074 2.3886 7 7 1.0023 0.4692 2.4227 8 14 2.8118 1.9002 3.9552 9 1 2.5728 3.3402 4.2281 10 1 2.3021 1.0895 5.0901 11 1 4.2686 1.6623 3.7926 12 6 2.2575 2.0114 -1.1672 13 8 2.0231 1.4520 -2.2175 14 6 2.8164 3.4110 -1.1671 15 6 4.3463 3.3524 -1.1457 16 6 4.9072 4.7751 -1.2061 17 7 4.4420 5.4340 -2.4333 18 6 5.0714 6.7515 -2.5944 19 6 4.1770 7.9843 -2.4490 20 6 4.6909 7.5699 -3.8298 21 6 2.9778 5.5441 -2.4545 22 6 2.3594 4.1444 -2.4311 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 0.7855 0.0328 3.2614 29 1 2.4597 3.9455 -0.2866 30 1 4.7010 2.7845 -2.0057 31 1 4.6790 2.8688 -0.2272 32 1 5.9966 4.7362 -1.2053 33 1 4.5631 5.3383 -0.3386 34 1 6.0980 6.8291 -2.2362 35 1 3.1214 7.8176 -2.2342 36 1 4.6149 8.8731 -1.9950 37 1 5.4668 8.1863 -4.2838 38 1 3.9732 7.1309 -4.5228 39 1 2.6431 6.1038 -1.5812 40 1 2.6658 6.0637 -3.3606 41 1 1.2724 4.2268 -2.4311 42 1 2.6822 3.5891 -3.3116 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495098323.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:52 Heat of formation + Delta-G solvation = -9.520857 kcal Electronic energy + Delta-G solvation = -21396.744573 eV Core-core repulsion = 18377.346700 eV Total energy + Delta-G solvation = -3019.397873 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.15350 -39.88976 -37.26236 -36.57283 -33.45664 -32.92617 -31.90305 -31.17770 -26.86370 -26.22968 -24.36663 -23.62836 -23.20962 -21.84674 -20.95355 -20.34909 -18.67967 -17.97504 -17.44109 -16.41873 -16.17977 -16.15696 -15.69442 -15.24051 -15.08812 -14.77580 -14.48292 -14.30487 -14.04052 -13.65201 -13.21017 -13.08269 -12.97245 -12.83130 -12.66028 -12.49480 -12.44840 -12.19266 -12.07966 -11.91910 -11.69221 -11.59467 -11.41936 -11.35121 -11.08262 -10.79255 -10.12863 -9.76650 -9.03194 -8.25736 -5.77686 1.43380 1.51370 1.58981 2.04662 2.31307 2.72733 2.97569 3.12383 3.17071 3.80773 3.87100 4.01684 4.07438 4.14883 4.21034 4.31966 4.36959 4.45461 4.57274 4.60796 4.70613 4.79810 4.81147 4.84142 4.88768 4.91468 4.93980 5.03403 5.09228 5.16019 5.19706 5.26847 5.29733 5.39720 5.45189 5.49966 5.83055 5.88236 6.12512 6.22749 6.51941 7.16713 7.65491 8.06834 8.71104 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.022692 B = 0.005755 C = 0.004908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.645562 B = 4863.905760 C = 5703.511664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.135 3.865 3 N -0.449 5.449 4 C -0.358 4.358 5 H 0.112 0.888 6 C 0.000 4.000 7 N -0.874 5.874 8 Si 0.981 3.019 9 H -0.266 1.266 10 H -0.284 1.284 11 H -0.271 1.271 12 C 0.441 3.559 13 O -0.647 6.647 14 C -0.083 4.083 15 C -0.094 4.094 16 C 0.070 3.930 17 N -0.519 5.519 18 C 0.011 3.989 19 C -0.218 4.218 20 C -0.168 4.168 21 C 0.066 3.934 22 C -0.091 4.091 23 H 0.008 0.992 24 H 0.052 0.948 25 H 0.080 0.920 26 H 0.027 0.973 27 H 0.083 0.917 28 H 0.271 0.729 29 H 0.083 0.917 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.042 0.958 34 H 0.132 0.868 35 H 0.091 0.909 36 H 0.107 0.893 37 H 0.114 0.886 38 H 0.087 0.913 39 H 0.043 0.957 40 H 0.086 0.914 41 H 0.055 0.945 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.082 12.191 -2.889 14.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.012 3.988 3 N -0.166 5.166 4 C -0.485 4.485 5 H 0.129 0.871 6 C -0.203 4.203 7 N -0.512 5.512 8 Si 0.804 3.196 9 H -0.190 1.190 10 H -0.210 1.210 11 H -0.196 1.196 12 C 0.232 3.768 13 O -0.537 6.537 14 C -0.104 4.104 15 C -0.132 4.132 16 C -0.058 4.058 17 N -0.242 5.242 18 C -0.098 4.098 19 C -0.257 4.257 20 C -0.206 4.206 21 C -0.061 4.061 22 C -0.129 4.129 23 H 0.027 0.973 24 H 0.071 0.929 25 H 0.098 0.902 26 H 0.045 0.955 27 H 0.101 0.899 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.113 0.887 33 H 0.060 0.940 34 H 0.150 0.850 35 H 0.110 0.890 36 H 0.125 0.875 37 H 0.132 0.868 38 H 0.106 0.894 39 H 0.061 0.939 40 H 0.104 0.896 41 H 0.074 0.926 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.993 11.435 -3.592 13.877 hybrid contribution -0.418 0.062 1.371 1.435 sum 6.575 11.497 -2.220 13.429 Atomic orbital electron populations 1.21910 0.96012 1.00338 1.00245 1.21166 0.95171 0.83578 0.98928 1.44126 1.55151 1.11726 1.05559 1.19964 1.43472 1.02320 0.82735 0.87090 1.25986 0.95504 0.96873 1.01923 1.70277 1.25896 1.26835 1.28158 0.85183 0.78865 0.78554 0.76953 1.19050 1.20991 1.19579 1.20755 0.83661 0.89549 0.82877 1.90466 1.60892 1.69672 1.32676 1.21046 0.97321 0.92475 0.99601 1.21380 0.92424 0.97623 1.01813 1.22022 1.00621 0.92917 0.90206 1.61768 1.06373 1.18980 1.37047 1.22793 0.98720 0.84556 1.03708 1.23582 1.00680 1.00126 1.01298 1.23123 1.03966 1.02530 0.91002 1.22095 0.87362 0.95413 1.01265 1.21333 0.99170 0.95509 0.96898 0.97270 0.92932 0.90164 0.95482 0.89875 0.91913 0.89898 0.92766 0.91159 0.88685 0.94021 0.85011 0.89025 0.87492 0.86820 0.89426 0.93935 0.89610 0.92604 0.92502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.17 9.66 71.98 0.70 -5.47 16 2 C 0.13 6.91 5.35 86.38 0.46 7.37 16 3 N -0.45 -23.18 2.62 -635.52 -1.67 -24.85 16 4 C -0.36 -17.71 9.21 84.04 0.77 -16.94 16 5 H 0.11 5.13 5.88 -2.91 -0.02 5.11 16 6 C 0.00 0.01 4.97 84.93 0.42 0.43 16 7 N -0.87 -43.54 8.13 21.66 0.18 -43.37 16 8 Si 0.98 37.91 29.62 68.60 2.03 39.94 16 9 H -0.27 -9.88 7.11 99.48 0.71 -9.17 16 10 H -0.28 -10.96 7.11 99.48 0.71 -10.25 16 11 H -0.27 -10.31 7.11 99.48 0.71 -9.61 16 12 C 0.44 22.19 6.72 87.66 0.59 22.78 16 13 O -0.65 -36.37 15.70 -3.05 -0.05 -36.42 16 14 C -0.08 -3.33 1.84 -11.46 -0.02 -3.35 16 15 C -0.09 -3.27 5.36 30.65 0.16 -3.11 16 16 C 0.07 1.88 5.44 86.33 0.47 2.35 16 17 N -0.52 -13.81 4.88 -871.07 -4.25 -18.06 16 18 C 0.01 0.23 6.10 44.92 0.27 0.50 16 19 C -0.22 -3.92 9.58 30.61 0.29 -3.63 16 20 C -0.17 -3.01 9.94 30.61 0.30 -2.70 16 21 C 0.07 1.85 4.12 86.33 0.36 2.20 16 22 C -0.09 -3.28 5.00 30.65 0.15 -3.12 16 23 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 24 H 0.05 2.26 8.14 -2.38 -0.02 2.24 16 25 H 0.08 4.14 6.02 -2.39 -0.01 4.13 16 26 H 0.03 1.40 7.44 -2.39 -0.02 1.39 16 27 H 0.08 4.34 5.99 -2.39 -0.01 4.32 16 28 H 0.27 12.77 8.31 -92.71 -0.77 12.00 16 29 H 0.08 3.32 6.20 -2.39 -0.01 3.31 16 30 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.09 2.17 8.07 -2.39 -0.02 2.15 16 33 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.13 2.29 8.04 -2.38 -0.02 2.28 16 35 H 0.09 1.81 5.97 -2.38 -0.01 1.79 16 36 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.09 1.73 7.23 -2.39 -0.02 1.71 16 39 H 0.04 1.14 7.12 -2.39 -0.02 1.13 16 40 H 0.09 2.16 6.43 -2.38 -0.02 2.14 16 41 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 42 H 0.06 2.29 7.78 -2.39 -0.02 2.27 16 Total: -1.00 -59.52 321.16 2.18 -57.35 By element: Atomic # 1 Polarization: 27.09 SS G_CDS: 1.00 Total: 28.09 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: 4.94 Total: -2.69 kcal Atomic # 7 Polarization: -80.54 SS G_CDS: -5.74 Total: -86.27 kcal Atomic # 8 Polarization: -36.37 SS G_CDS: -0.05 Total: -36.42 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 2.03 Total: 39.94 kcal Total: -59.52 2.18 -57.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495098323.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.827 kcal (2) G-P(sol) polarization free energy of solvation -59.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds