Wall clock time and date at job start Mon Mar 30 2020 00:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47041 * 2 1 4 4 C 1.46496 * 120.00103 * 97.53950 * 3 2 1 5 5 C 1.50700 * 109.47376 * 270.00003 * 4 3 2 6 6 H 1.08008 * 119.99744 * 359.97438 * 5 4 3 7 7 C 1.37879 * 120.00279 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99718 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99886 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47132 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47205 * 119.99892 * 9 7 5 12 12 H 1.48496 * 109.47253 * 240.00018 * 9 7 5 13 13 C 1.34780 * 120.00373 * 277.53789 * 3 2 1 14 14 O 1.21270 * 120.00352 * 177.32755 * 13 3 2 15 15 C 1.50704 * 119.99686 * 357.32160 * 13 3 2 16 16 H 1.09005 * 109.87852 * 354.78305 * 15 13 3 17 17 C 1.54320 * 109.88985 * 233.58203 * 15 13 3 18 18 C 1.55141 * 103.01639 * 218.31232 * 17 15 13 19 19 C 1.54902 * 101.65450 * 35.64978 * 18 17 15 20 20 N 1.47438 * 109.88833 * 115.80778 * 15 13 3 21 21 C 1.46904 * 110.99996 * 356.15410 * 20 15 13 22 22 C 1.52999 * 117.49617 * 261.47394 * 21 20 15 23 23 C 1.52995 * 117.49991 * 192.81799 * 21 20 15 24 24 H 1.09003 * 109.46699 * 299.99978 * 1 2 3 25 25 H 1.09003 * 109.47010 * 59.99788 * 1 2 3 26 26 H 1.08992 * 109.47058 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47144 * 240.00162 * 2 1 3 28 28 H 1.08993 * 109.47074 * 120.00020 * 2 1 3 29 29 H 1.09001 * 109.47835 * 149.99521 * 4 3 2 30 30 H 1.09003 * 109.47052 * 29.99804 * 4 3 2 31 31 H 0.96999 * 120.00422 * 0.02562 * 8 7 5 32 32 H 1.09002 * 110.70484 * 336.69447 * 17 15 13 33 33 H 1.08998 * 110.70788 * 99.93015 * 17 15 13 34 34 H 1.09003 * 110.99048 * 277.55922 * 18 17 15 35 35 H 1.09004 * 110.98994 * 153.74667 * 18 17 15 36 36 H 1.09004 * 110.37528 * 204.09671 * 19 18 17 37 37 H 1.09001 * 110.37062 * 81.75897 * 19 18 17 38 38 H 1.09004 * 115.55238 * 47.13947 * 21 20 15 39 39 H 1.09000 * 117.49909 * 0.02562 * 22 21 20 40 40 H 1.09001 * 117.49700 * 145.01547 * 22 21 20 41 41 H 1.09006 * 117.49872 * 214.97500 * 23 21 20 42 42 H 1.09006 * 117.49900 * 359.96818 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4194 2.0163 1.2577 5 6 1.2290 2.7036 1.8755 6 1 0.2697 2.6710 1.3804 7 6 1.3646 3.3741 3.0726 8 7 2.5327 3.4135 3.6756 9 14 -0.1109 4.2266 3.8378 10 1 -1.2994 4.0347 2.9684 11 1 -0.3790 3.6447 5.1774 12 1 0.1726 5.6777 3.9763 13 6 2.0986 2.0677 -1.1571 14 8 2.4567 3.2263 -1.1512 15 6 1.7436 1.3953 -2.4583 16 1 1.5357 0.3393 -2.2852 17 6 2.9057 1.5475 -3.4621 18 6 2.1744 1.7776 -4.8109 19 6 0.9495 2.6139 -4.3641 20 7 0.5632 2.0476 -3.0542 21 6 0.0333 3.0905 -2.1655 22 6 -1.1635 2.7266 -1.2844 23 6 -1.3519 3.6553 -2.4865 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.2011 2.7502 1.0612 30 1 2.7973 1.2579 1.9434 31 1 3.2989 2.9711 3.2780 32 1 3.5246 2.4079 -3.2076 33 1 3.5049 0.6377 -3.4989 34 1 1.8612 0.8311 -5.2517 35 1 2.8003 2.3408 -5.5033 36 1 0.1345 2.5054 -5.0797 37 1 1.2249 3.6631 -4.2576 38 1 0.7729 3.7760 -1.7517 39 1 -1.5573 1.7133 -1.3638 40 1 -1.2113 3.1731 -0.2912 41 1 -1.5238 4.7124 -2.2836 42 1 -1.8698 3.2534 -3.3574 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495107953.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:40 Heat of formation + Delta-G solvation = 4.259350 kcal Electronic energy + Delta-G solvation = -22204.328798 eV Core-core repulsion = 19185.528479 eV Total energy + Delta-G solvation = -3018.800318 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.39093 -37.61737 -35.74481 -35.35712 -33.02567 -30.09011 -30.01021 -29.35336 -26.52646 -23.55415 -22.89659 -22.29202 -21.81666 -20.91827 -20.50036 -18.02780 -17.02262 -16.92611 -16.47599 -15.30876 -14.76080 -14.70825 -14.05066 -13.76827 -13.69278 -13.32419 -13.16037 -13.01272 -12.48660 -12.14030 -12.03853 -11.60322 -11.55849 -11.33838 -11.26183 -11.13549 -11.10399 -10.74444 -10.66701 -10.59600 -10.38107 -10.14358 -9.92941 -9.66417 -9.26778 -9.06453 -8.36493 -8.08302 -7.54871 -6.35679 -4.07250 3.14409 3.42792 3.47298 3.59294 3.84954 4.10524 4.17038 4.53450 4.69741 4.73850 4.96746 5.16509 5.30597 5.38100 5.39502 5.42686 5.50253 5.56188 5.64423 5.74867 5.78557 5.84422 5.86545 5.91441 5.94565 6.02885 6.15098 6.24026 6.27160 6.39723 6.47423 6.56877 6.77053 6.85576 7.02216 7.11999 7.30818 7.44183 8.06809 8.30035 8.47988 8.80033 8.99904 9.61987 11.01065 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.021571 B = 0.007207 C = 0.006517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.718188 B = 3884.417583 C = 4295.138285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.112 3.888 3 N -0.585 5.585 4 C 0.235 3.765 5 C -0.597 4.597 6 H 0.057 0.943 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 1.073 2.927 10 H -0.289 1.289 11 H -0.287 1.287 12 H -0.287 1.287 13 C 0.506 3.494 14 O -0.544 6.544 15 C 0.050 3.950 16 H 0.101 0.899 17 C -0.131 4.131 18 C -0.125 4.125 19 C 0.044 3.956 20 N -0.479 5.479 21 C -0.024 4.024 22 C -0.153 4.153 23 C -0.176 4.176 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.030 0.970 30 H 0.019 0.981 31 H 0.267 0.733 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.051 0.949 38 H 0.127 0.873 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.949 -6.754 -14.424 16.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.012 4.012 3 N -0.315 5.315 4 C 0.115 3.885 5 C -0.635 4.635 6 H 0.075 0.925 7 C -0.186 4.186 8 N -0.550 5.550 9 Si 0.901 3.099 10 H -0.215 1.215 11 H -0.214 1.214 12 H -0.214 1.214 13 C 0.292 3.708 14 O -0.423 6.423 15 C -0.061 4.061 16 H 0.118 0.882 17 C -0.169 4.169 18 C -0.164 4.164 19 C -0.083 4.083 20 N -0.204 5.204 21 C -0.132 4.132 22 C -0.191 4.191 23 C -0.214 4.214 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.048 0.952 30 H 0.037 0.963 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.069 0.931 38 H 0.144 0.856 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.108 0.892 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.634 -5.619 -13.140 15.023 hybrid contribution 1.020 -0.439 -1.043 1.524 sum -3.614 -6.058 -14.183 15.841 Atomic orbital electron populations 1.22450 0.95999 1.01132 1.04148 1.21417 0.94982 0.83465 1.01324 1.48101 1.62205 1.12939 1.08280 1.19359 0.96791 0.92856 0.79499 1.22304 0.96291 1.36474 1.08473 0.92498 1.25752 1.02172 0.96038 0.94627 1.70736 1.00620 1.42565 1.41088 0.83489 0.74263 0.76521 0.75581 1.21511 1.21377 1.21358 1.20498 0.78079 0.86871 0.85335 1.90574 1.48045 1.16713 1.86985 1.22732 0.90667 1.00161 0.92567 0.88180 1.22770 0.97131 1.02991 0.94051 1.22676 0.96483 1.00433 0.96760 1.23000 0.96860 0.97661 0.90804 1.63768 1.26795 1.27626 1.02183 1.23379 0.92047 0.97840 0.99962 1.23074 1.00696 1.00018 0.95289 1.22966 0.99167 0.99007 1.00237 0.91025 0.91300 0.92970 0.92086 0.90755 0.95208 0.96287 0.92248 0.90191 0.90643 0.90726 0.90750 0.90298 0.93062 0.85583 0.88469 0.88375 0.89182 0.89077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.84 9.92 37.16 0.37 -2.47 16 2 C 0.11 1.86 5.80 -4.04 -0.02 1.84 16 3 N -0.58 -12.31 2.48 -175.06 -0.43 -12.74 16 4 C 0.23 6.04 4.49 -5.20 -0.02 6.02 16 5 C -0.60 -16.63 9.31 -34.44 -0.32 -16.95 16 6 H 0.06 1.59 7.03 -52.48 -0.37 1.22 16 7 C 0.02 0.52 5.46 -17.82 -0.10 0.42 16 8 N -0.91 -27.82 13.65 55.43 0.76 -27.07 16 9 Si 1.07 25.72 29.90 -169.99 -5.08 20.63 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 C 0.51 10.46 5.02 -10.98 -0.06 10.40 16 14 O -0.54 -13.46 13.54 5.57 0.08 -13.39 16 15 C 0.05 0.80 2.95 -67.88 -0.20 0.60 16 16 H 0.10 1.47 5.34 -51.93 -0.28 1.19 16 17 C -0.13 -1.79 6.43 -24.91 -0.16 -1.95 16 18 C -0.13 -1.41 7.08 -24.59 -0.17 -1.59 16 19 C 0.04 0.58 6.59 -2.30 -0.02 0.57 16 20 N -0.48 -7.45 5.30 -216.81 -1.15 -8.60 16 21 C -0.02 -0.43 3.52 -67.71 -0.24 -0.67 16 22 C -0.15 -2.63 9.24 -26.70 -0.25 -2.88 16 23 C -0.18 -2.66 10.29 -26.70 -0.27 -2.94 16 24 H 0.07 1.33 7.70 -51.93 -0.40 0.93 16 25 H 0.07 1.10 4.38 -51.93 -0.23 0.87 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.84 6.18 -51.93 -0.32 0.52 16 28 H 0.07 1.21 7.81 -51.93 -0.41 0.81 16 29 H 0.03 0.86 7.33 -51.93 -0.38 0.48 16 30 H 0.02 0.50 7.71 -51.93 -0.40 0.10 16 31 H 0.27 8.10 7.22 -40.82 -0.29 7.81 16 32 H 0.08 1.27 7.40 -51.93 -0.38 0.89 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.05 0.74 7.81 -51.93 -0.41 0.33 16 38 H 0.13 2.80 5.19 -51.93 -0.27 2.53 16 39 H 0.10 1.56 6.41 -51.93 -0.33 1.23 16 40 H 0.10 1.92 7.72 -51.93 -0.40 1.51 16 41 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 324.53 15.07 4.89 4.89 Total: -1.00 -31.86 324.53 -9.03 -40.89 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -6.62 Total: 4.99 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: -1.46 Total: -9.61 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: -0.83 Total: -48.41 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.08 Total: -13.39 kcal Atomic # 14 Polarization: 25.72 SS G_CDS: -5.08 Total: 20.63 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.86 -9.03 -40.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495107953.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.149 kcal (2) G-P(sol) polarization free energy of solvation -31.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds