Wall clock time and date at job start Mon Mar 30 2020 00:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47041 * 2 1 4 4 C 1.46496 * 120.00103 * 97.53950 * 3 2 1 5 5 C 1.50700 * 109.47376 * 270.00003 * 4 3 2 6 6 H 1.08008 * 119.99744 * 359.97438 * 5 4 3 7 7 C 1.37879 * 120.00279 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99718 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99886 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47132 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47205 * 119.99892 * 9 7 5 12 12 H 1.48496 * 109.47253 * 240.00018 * 9 7 5 13 13 C 1.34780 * 120.00373 * 277.53789 * 3 2 1 14 14 O 1.21270 * 120.00352 * 177.32755 * 13 3 2 15 15 C 1.50704 * 119.99686 * 357.32160 * 13 3 2 16 16 H 1.09005 * 109.87852 * 354.78305 * 15 13 3 17 17 C 1.54320 * 109.88985 * 233.58203 * 15 13 3 18 18 C 1.55141 * 103.01639 * 218.31232 * 17 15 13 19 19 C 1.54902 * 101.65450 * 35.64978 * 18 17 15 20 20 N 1.47438 * 109.88833 * 115.80778 * 15 13 3 21 21 C 1.46904 * 110.99996 * 356.15410 * 20 15 13 22 22 C 1.52999 * 117.49617 * 261.47394 * 21 20 15 23 23 C 1.52995 * 117.49991 * 192.81799 * 21 20 15 24 24 H 1.09003 * 109.46699 * 299.99978 * 1 2 3 25 25 H 1.09003 * 109.47010 * 59.99788 * 1 2 3 26 26 H 1.08992 * 109.47058 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47144 * 240.00162 * 2 1 3 28 28 H 1.08993 * 109.47074 * 120.00020 * 2 1 3 29 29 H 1.09001 * 109.47835 * 149.99521 * 4 3 2 30 30 H 1.09003 * 109.47052 * 29.99804 * 4 3 2 31 31 H 0.96999 * 120.00422 * 0.02562 * 8 7 5 32 32 H 1.09002 * 110.70484 * 336.69447 * 17 15 13 33 33 H 1.08998 * 110.70788 * 99.93015 * 17 15 13 34 34 H 1.09003 * 110.99048 * 277.55922 * 18 17 15 35 35 H 1.09004 * 110.98994 * 153.74667 * 18 17 15 36 36 H 1.09004 * 110.37528 * 204.09671 * 19 18 17 37 37 H 1.09001 * 110.37062 * 81.75897 * 19 18 17 38 38 H 1.09004 * 115.55238 * 47.13947 * 21 20 15 39 39 H 1.09000 * 117.49909 * 0.02562 * 22 21 20 40 40 H 1.09001 * 117.49700 * 145.01547 * 22 21 20 41 41 H 1.09006 * 117.49872 * 214.97500 * 23 21 20 42 42 H 1.09006 * 117.49900 * 359.96818 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4194 2.0163 1.2577 5 6 1.2290 2.7036 1.8755 6 1 0.2697 2.6710 1.3804 7 6 1.3646 3.3741 3.0726 8 7 2.5327 3.4135 3.6756 9 14 -0.1109 4.2266 3.8378 10 1 -1.2994 4.0347 2.9684 11 1 -0.3790 3.6447 5.1774 12 1 0.1726 5.6777 3.9763 13 6 2.0986 2.0677 -1.1571 14 8 2.4567 3.2263 -1.1512 15 6 1.7436 1.3953 -2.4583 16 1 1.5357 0.3393 -2.2852 17 6 2.9057 1.5475 -3.4621 18 6 2.1744 1.7776 -4.8109 19 6 0.9495 2.6139 -4.3641 20 7 0.5632 2.0476 -3.0542 21 6 0.0333 3.0905 -2.1655 22 6 -1.1635 2.7266 -1.2844 23 6 -1.3519 3.6553 -2.4865 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.2011 2.7502 1.0612 30 1 2.7973 1.2579 1.9434 31 1 3.2989 2.9711 3.2780 32 1 3.5246 2.4079 -3.2076 33 1 3.5049 0.6377 -3.4989 34 1 1.8612 0.8311 -5.2517 35 1 2.8003 2.3408 -5.5033 36 1 0.1345 2.5054 -5.0797 37 1 1.2249 3.6631 -4.2576 38 1 0.7729 3.7760 -1.7517 39 1 -1.5573 1.7133 -1.3638 40 1 -1.2113 3.1731 -0.2912 41 1 -1.5238 4.7124 -2.2836 42 1 -1.8698 3.2534 -3.3574 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495107953.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:40 Heat of formation + Delta-G solvation = -17.296703 kcal Electronic energy + Delta-G solvation = -22205.263538 eV Core-core repulsion = 19185.528479 eV Total energy + Delta-G solvation = -3019.735059 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.83946 -39.07958 -37.18003 -36.89117 -35.14788 -31.63859 -31.19854 -30.64414 -28.43528 -25.34433 -24.48572 -23.60267 -23.17042 -22.20542 -21.76059 -19.57647 -19.10358 -18.41415 -17.86416 -16.75318 -16.29779 -16.04995 -15.77315 -15.41338 -15.04145 -14.93777 -14.70784 -14.32107 -13.91360 -13.74416 -13.45925 -13.29662 -13.19951 -12.74449 -12.64105 -12.56446 -12.51873 -12.14625 -12.11907 -11.99254 -11.89529 -11.70360 -11.26832 -11.13471 -10.96815 -10.82525 -10.61315 -9.61791 -9.24715 -8.65697 -6.40839 1.44655 1.54690 1.59890 1.70294 2.23646 2.50967 2.79676 2.87901 3.10767 3.45974 3.69710 3.71546 3.98867 4.06088 4.12965 4.16584 4.26286 4.35045 4.42665 4.55105 4.57528 4.68032 4.71226 4.73026 4.84184 4.86288 4.92063 4.94390 4.99085 5.01872 5.04745 5.12296 5.23918 5.28877 5.48963 5.63006 5.81562 5.85953 5.98649 6.19983 6.47790 6.67370 7.28944 7.41749 8.67699 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.021571 B = 0.007207 C = 0.006517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.718188 B = 3884.417583 C = 4295.138285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.103 3.897 3 N -0.591 5.591 4 C 0.247 3.753 5 C -0.596 4.596 6 H 0.052 0.948 7 C -0.034 4.034 8 N -0.938 5.938 9 Si 1.116 2.884 10 H -0.273 1.273 11 H -0.271 1.271 12 H -0.285 1.285 13 C 0.500 3.500 14 O -0.595 6.595 15 C 0.055 3.945 16 H 0.125 0.875 17 C -0.133 4.133 18 C -0.111 4.111 19 C 0.036 3.964 20 N -0.465 5.465 21 C -0.038 4.038 22 C -0.158 4.158 23 C -0.146 4.146 24 H 0.035 0.965 25 H 0.068 0.932 26 H 0.090 0.910 27 H 0.102 0.898 28 H 0.075 0.925 29 H -0.013 1.013 30 H 0.015 0.985 31 H 0.254 0.746 32 H 0.047 0.953 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.107 0.893 37 H 0.030 0.970 38 H 0.076 0.924 39 H 0.113 0.887 40 H 0.064 0.936 41 H 0.092 0.908 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.858 -8.797 -16.951 19.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 N -0.321 5.321 4 C 0.125 3.875 5 C -0.635 4.635 6 H 0.070 0.930 7 C -0.232 4.232 8 N -0.576 5.576 9 Si 0.938 3.062 10 H -0.197 1.197 11 H -0.196 1.196 12 H -0.212 1.212 13 C 0.289 3.711 14 O -0.477 6.477 15 C -0.055 4.055 16 H 0.142 0.858 17 C -0.172 4.172 18 C -0.149 4.149 19 C -0.091 4.091 20 N -0.190 5.190 21 C -0.146 4.146 22 C -0.196 4.196 23 C -0.183 4.183 24 H 0.055 0.945 25 H 0.087 0.913 26 H 0.108 0.892 27 H 0.120 0.880 28 H 0.093 0.907 29 H 0.005 0.995 30 H 0.033 0.967 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.109 0.891 36 H 0.125 0.875 37 H 0.048 0.952 38 H 0.094 0.906 39 H 0.131 0.869 40 H 0.082 0.918 41 H 0.110 0.890 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.548 -7.709 -15.696 18.673 hybrid contribution 1.662 0.205 -0.299 1.701 sum -4.886 -7.504 -15.995 18.332 Atomic orbital electron populations 1.22358 0.95103 1.03009 1.02355 1.21773 0.95697 0.81029 1.03383 1.48149 1.62434 1.14711 1.06806 1.18872 0.94978 0.91933 0.81683 1.22542 0.96599 1.36051 1.08315 0.92987 1.27216 1.03870 0.96495 0.95610 1.70861 1.01058 1.43928 1.41709 0.82944 0.71785 0.75578 0.75865 1.19748 1.19608 1.21170 1.21444 0.76695 0.86331 0.86645 1.90556 1.50033 1.19287 1.87842 1.22879 0.92021 1.00534 0.90092 0.85803 1.22829 0.96443 1.03039 0.94843 1.22694 0.95147 1.01595 0.95432 1.23204 0.98929 0.96879 0.90045 1.63949 1.26174 1.26547 1.02377 1.23051 0.92003 0.98265 1.01322 1.22951 1.01070 1.01181 0.94366 1.23054 0.96583 0.98908 0.99806 0.94537 0.91295 0.89163 0.88023 0.90680 0.99535 0.96736 0.93666 0.93415 0.87826 0.87871 0.89070 0.87539 0.95174 0.90635 0.86908 0.91782 0.88969 0.86118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.08 9.92 71.98 0.71 -4.36 16 2 C 0.10 3.27 5.80 86.38 0.50 3.77 16 3 N -0.59 -25.46 2.48 -826.17 -2.05 -27.51 16 4 C 0.25 13.44 4.49 85.63 0.38 13.82 16 5 C -0.60 -34.69 9.31 25.60 0.24 -34.45 16 6 H 0.05 3.02 7.03 -2.91 -0.02 3.00 16 7 C -0.03 -2.04 5.46 84.66 0.46 -1.57 16 8 N -0.94 -59.32 13.65 21.45 0.29 -59.03 16 9 Si 1.12 52.63 29.90 68.60 2.05 54.68 16 10 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 11 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 12 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 13 C 0.50 21.18 5.02 87.66 0.44 21.62 16 14 O -0.60 -31.38 13.54 -3.00 -0.04 -31.42 16 15 C 0.06 1.68 2.95 44.52 0.13 1.81 16 16 H 0.12 3.15 5.34 -2.38 -0.01 3.14 16 17 C -0.13 -3.36 6.43 31.78 0.20 -3.15 16 18 C -0.11 -2.06 7.08 31.98 0.23 -1.84 16 19 C 0.04 0.86 6.59 86.77 0.57 1.43 16 20 N -0.47 -13.48 5.30 -839.84 -4.45 -17.93 16 21 C -0.04 -1.33 3.52 44.91 0.16 -1.18 16 22 C -0.16 -5.37 9.24 30.62 0.28 -5.08 16 23 C -0.15 -4.17 10.29 30.61 0.32 -3.86 16 24 H 0.04 1.33 7.70 -2.39 -0.02 1.32 16 25 H 0.07 2.05 4.38 -2.39 -0.01 2.04 16 26 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.10 2.42 6.18 -2.39 -0.01 2.41 16 28 H 0.07 2.37 7.81 -2.39 -0.02 2.35 16 29 H -0.01 -0.83 7.33 -2.39 -0.02 -0.85 16 30 H 0.01 0.80 7.71 -2.39 -0.02 0.78 16 31 H 0.25 16.28 7.22 -92.71 -0.67 15.61 16 32 H 0.05 1.53 7.40 -2.39 -0.02 1.51 16 33 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.11 1.97 8.14 -2.38 -0.02 1.95 16 37 H 0.03 0.84 7.81 -2.39 -0.02 0.82 16 38 H 0.08 3.56 5.19 -2.39 -0.01 3.54 16 39 H 0.11 3.43 6.41 -2.39 -0.02 3.41 16 40 H 0.06 2.59 7.72 -2.39 -0.02 2.57 16 41 H 0.09 2.58 8.14 -2.38 -0.02 2.56 16 42 H 0.12 2.77 8.14 -2.38 -0.02 2.75 16 Total: -1.00 -75.26 324.53 1.54 -73.73 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: 1.10 Total: 20.52 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: 4.63 Total: -13.04 kcal Atomic # 7 Polarization: -98.26 SS G_CDS: -6.21 Total: -104.47 kcal Atomic # 8 Polarization: -31.38 SS G_CDS: -0.04 Total: -31.42 kcal Atomic # 14 Polarization: 52.63 SS G_CDS: 2.05 Total: 54.68 kcal Total: -75.26 1.54 -73.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495107953.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.431 kcal (2) G-P(sol) polarization free energy of solvation -75.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds