Wall clock time and date at job start Mon Mar 30 2020 00:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53008 * 109.46881 * 2 1 4 4 O 1.42891 * 109.47274 * 120.00188 * 2 1 3 5 5 C 1.42901 * 114.00366 * 150.00167 * 4 2 1 6 6 H 1.08999 * 112.84411 * 341.19431 * 5 4 2 7 7 C 1.53776 * 113.69360 * 112.46060 * 5 4 2 8 8 C 1.53777 * 87.08355 * 139.99367 * 7 5 4 9 9 H 1.08999 * 113.69224 * 89.12411 * 8 7 5 10 10 N 1.46900 * 113.61837 * 220.02512 * 8 7 5 11 11 C 1.46908 * 110.99509 * 252.49770 * 10 8 7 12 12 C 1.52997 * 109.46699 * 180.02562 * 11 10 8 13 13 H 1.08998 * 109.47711 * 54.99907 * 12 11 10 14 14 C 1.47204 * 109.47142 * 294.99226 * 12 11 10 15 15 N 8.22639 * 129.50868 * 94.58801 * 2 1 3 16 16 C 1.53004 * 109.47070 * 175.00094 * 12 11 10 17 17 C 1.50701 * 109.47211 * 185.00010 * 16 12 11 18 18 H 1.08002 * 119.99761 * 359.97438 * 17 16 12 19 19 C 1.37871 * 119.99694 * 180.27574 * 17 16 12 20 20 N 1.31514 * 120.00482 * 359.71466 * 19 17 16 21 21 Si 1.86801 * 119.99746 * 179.72062 * 19 17 16 22 22 H 1.48504 * 109.47266 * 60.00049 * 21 19 17 23 23 H 1.48504 * 109.46970 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47383 * 299.99456 * 21 19 17 25 25 C 1.53775 * 113.61508 * 210.00013 * 5 4 2 26 26 H 1.08998 * 109.46943 * 299.99976 * 1 2 3 27 27 H 1.09004 * 109.47030 * 59.99947 * 1 2 3 28 28 H 1.08991 * 109.47013 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47348 * 240.00668 * 2 1 3 30 30 H 1.08998 * 109.47312 * 60.00250 * 3 2 1 31 31 H 1.09006 * 109.46921 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.46842 * 299.99734 * 3 2 1 33 33 H 1.09003 * 113.61153 * 25.44613 * 7 5 4 34 34 H 1.08997 * 113.61866 * 254.55013 * 7 5 4 35 35 H 1.00904 * 110.99836 * 16.44512 * 10 8 7 36 36 H 1.08999 * 109.47398 * 59.99600 * 11 10 8 37 37 H 1.09000 * 109.46928 * 299.99701 * 11 10 8 38 38 H 1.09000 * 109.47211 * 64.99037 * 16 12 11 39 39 H 1.09007 * 109.46376 * 304.99579 * 16 12 11 40 40 H 0.96995 * 120.00207 * 179.97438 * 20 19 17 41 41 H 1.09004 * 113.61543 * 105.38623 * 25 5 4 42 42 H 1.09002 * 113.61427 * 334.47945 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 3.2660 -1.3245 0.9886 6 1 3.5127 -1.4892 -0.0603 7 6 4.4093 -0.6900 1.7979 8 6 4.8968 -2.1205 2.0821 9 1 5.5895 -2.5041 1.3331 10 7 5.3768 -2.3165 3.4566 11 6 6.8399 -2.4443 3.4900 12 6 7.3012 -2.6473 4.9345 13 1 6.7803 -3.5022 5.3656 14 6 6.9978 -1.4403 5.7207 15 7 6.7636 -0.5077 6.3266 16 6 8.8093 -2.9046 4.9570 17 6 9.2432 -3.2258 6.3639 18 1 8.5162 -3.2441 7.1624 19 6 10.5694 -3.4901 6.6329 20 7 11.4548 -3.4675 5.6607 21 14 11.1086 -3.8806 8.3782 22 1 10.3969 -5.0930 8.8567 23 1 12.5731 -4.1256 8.4008 24 1 10.7844 -2.7341 9.2647 25 6 3.4433 -2.5743 1.8667 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5137 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 3.1301 1.4426 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 4.0717 -0.1588 2.6879 34 1 5.1012 -0.1052 1.1918 35 1 5.0653 -1.5689 4.0585 36 1 7.2931 -1.5384 3.0873 37 1 7.1436 -3.3009 2.8882 38 1 9.3348 -2.0155 4.6086 39 1 9.0441 -3.7449 4.3035 40 1 12.3878 -3.6531 5.8500 41 1 3.3554 -3.5109 1.3160 42 1 2.8416 -2.5583 2.7755 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000514925627.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:03 Heat of formation + Delta-G solvation = -20.864835 kcal Electronic energy + Delta-G solvation = -19592.718108 eV Core-core repulsion = 16572.828324 eV Total energy + Delta-G solvation = -3019.889785 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.82538 -37.69376 -36.57714 -34.32573 -33.22490 -32.28781 -30.76063 -27.55210 -26.55393 -25.73774 -23.77363 -22.45833 -21.80567 -21.56121 -19.80086 -17.21738 -16.70309 -16.52432 -15.90930 -15.34390 -15.19644 -14.63183 -14.48889 -14.15113 -13.37464 -13.18783 -13.14799 -12.69492 -12.63405 -12.54338 -12.45329 -12.41635 -12.13001 -11.93551 -11.64345 -11.30439 -11.28868 -11.03918 -10.95882 -10.88398 -10.85098 -10.68692 -10.48420 -10.24806 -9.60179 -9.51550 -9.23131 -8.44892 -8.25444 -6.09175 -4.12322 3.31882 3.35838 3.39533 3.43554 3.57691 3.63175 4.27697 4.41775 4.47403 4.52488 4.62125 4.73063 4.77269 4.82233 4.87635 4.91262 5.16561 5.27973 5.28791 5.42057 5.49027 5.51522 5.54102 5.64163 5.69770 5.74508 5.83662 5.91262 5.91896 5.99743 6.05752 6.16635 6.40797 6.55126 7.13410 7.16969 7.42753 7.45499 7.53529 7.85805 8.23599 8.40919 8.92040 9.53099 11.01698 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.046809 B = 0.002888 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.037813 B = 9692.269652 C = 9844.459655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.079 3.921 3 C -0.175 4.175 4 O -0.366 6.366 5 C 0.063 3.937 6 H 0.085 0.915 7 C -0.185 4.185 8 C 0.069 3.931 9 H 0.101 0.899 10 N -0.678 5.678 11 C 0.067 3.933 12 C 0.006 3.994 13 H 0.111 0.889 14 C 0.241 3.759 15 N -0.477 5.477 16 C 0.033 3.967 17 C -0.527 4.527 18 H 0.056 0.944 19 C 0.062 3.938 20 N -0.892 5.892 21 Si 0.892 3.108 22 H -0.274 1.274 23 H -0.286 1.286 24 H -0.277 1.277 25 C -0.124 4.124 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.090 0.910 34 H 0.066 0.934 35 H 0.342 0.658 36 H 0.035 0.965 37 H 0.092 0.908 38 H 0.024 0.976 39 H 0.040 0.960 40 H 0.263 0.737 41 H 0.072 0.928 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.590 3.555 -15.118 23.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.021 3.979 3 C -0.233 4.233 4 O -0.285 6.285 5 C 0.005 3.995 6 H 0.103 0.897 7 C -0.224 4.224 8 C -0.041 4.041 9 H 0.119 0.881 10 N -0.308 5.308 11 C -0.063 4.063 12 C -0.016 4.016 13 H 0.129 0.871 14 C -0.076 4.076 15 N -0.154 5.154 16 C -0.006 4.006 17 C -0.565 4.565 18 H 0.075 0.925 19 C -0.140 4.140 20 N -0.531 5.531 21 Si 0.720 3.280 22 H -0.200 1.200 23 H -0.212 1.212 24 H -0.203 1.203 25 C -0.162 4.162 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.085 0.915 35 H 0.161 0.839 36 H 0.053 0.947 37 H 0.110 0.890 38 H 0.042 0.958 39 H 0.058 0.942 40 H 0.073 0.927 41 H 0.091 0.909 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -17.953 4.250 -14.059 23.195 hybrid contribution 1.020 0.470 0.386 1.188 sum -16.933 4.720 -13.673 22.270 Atomic orbital electron populations 1.21873 0.93838 1.02660 1.02408 1.22158 0.94892 0.92621 0.88181 1.22330 1.01669 0.96880 1.02384 1.87996 1.36228 1.69178 1.35125 1.23627 0.83519 0.94120 0.98265 0.89710 1.24263 0.98133 0.98374 1.01657 1.22744 0.95779 0.94268 0.91357 0.88120 1.60503 1.11614 1.50762 1.07903 1.22133 0.86322 1.01474 0.96402 1.19345 1.02315 0.89384 0.90571 0.87102 1.29352 0.91006 0.94162 0.93067 1.81057 1.11561 1.12625 1.10125 1.19158 0.84874 0.98213 0.98330 1.21115 0.93493 1.48240 0.93643 0.92547 1.24951 0.96701 0.95168 0.97154 1.69925 1.02447 1.49023 1.31700 0.86649 0.77484 0.79027 0.84885 1.19990 1.21200 1.20279 1.23343 0.96361 0.96289 1.00256 0.91814 0.91458 0.91997 0.92349 0.91830 0.92410 0.91930 0.89159 0.91500 0.83928 0.94660 0.89014 0.95779 0.94201 0.92745 0.90890 0.88747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.56 37.16 0.36 -0.72 16 2 C 0.08 0.66 3.33 -26.73 -0.09 0.57 16 3 C -0.18 -1.37 9.53 37.16 0.35 -1.01 16 4 O -0.37 -4.00 10.00 -35.23 -0.35 -4.35 16 5 C 0.06 0.61 4.26 -25.92 -0.11 0.50 16 6 H 0.09 0.69 7.45 -51.93 -0.39 0.30 16 7 C -0.18 -1.97 7.53 -25.92 -0.20 -2.16 16 8 C 0.07 0.76 4.18 -66.90 -0.28 0.48 16 9 H 0.10 1.01 7.87 -51.93 -0.41 0.60 16 10 N -0.68 -9.02 6.62 -105.86 -0.70 -9.72 16 11 C 0.07 0.98 4.96 -3.82 -0.02 0.96 16 12 C 0.01 0.11 2.42 -93.40 -0.23 -0.12 16 13 H 0.11 1.97 8.14 -51.93 -0.42 1.55 16 14 C 0.24 4.91 12.98 -20.74 -0.27 4.65 16 15 N -0.48 -10.51 18.54 42.17 0.78 -9.73 16 16 C 0.03 0.76 4.42 -27.88 -0.12 0.64 16 17 C -0.53 -14.09 8.60 -34.44 -0.30 -14.38 16 18 H 0.06 1.50 7.59 -52.49 -0.40 1.10 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 20 N -0.89 -25.60 13.29 55.43 0.74 -24.86 16 21 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 25 C -0.12 -1.28 7.71 -25.92 -0.20 -1.47 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.42 7.42 -51.93 -0.39 0.04 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.09 1.09 7.82 -51.93 -0.41 0.68 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.34 4.84 7.27 -39.29 -0.29 4.55 16 36 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.09 1.25 8.13 -51.93 -0.42 0.83 16 38 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 351.97 15.07 5.30 5.30 Total: -1.00 -29.77 351.97 -7.77 -37.54 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -7.32 Total: -0.14 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: -1.20 Total: -10.44 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: 0.82 Total: -44.31 kcal Atomic # 8 Polarization: -4.00 SS G_CDS: -0.35 Total: -4.35 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.77 -7.77 -37.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514925627.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.672 kcal (2) G-P(sol) polarization free energy of solvation -29.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds