Wall clock time and date at job start Mon Mar 30 2020 00:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53008 * 109.46881 * 2 1 4 4 O 1.42891 * 109.47274 * 120.00188 * 2 1 3 5 5 C 1.42901 * 114.00366 * 150.00167 * 4 2 1 6 6 H 1.08999 * 112.84411 * 341.19431 * 5 4 2 7 7 C 1.53776 * 113.69360 * 112.46060 * 5 4 2 8 8 C 1.53777 * 87.08355 * 139.99367 * 7 5 4 9 9 H 1.08999 * 113.69224 * 89.12411 * 8 7 5 10 10 N 1.46900 * 113.61837 * 220.02512 * 8 7 5 11 11 C 1.46908 * 110.99509 * 252.49770 * 10 8 7 12 12 C 1.52997 * 109.46699 * 180.02562 * 11 10 8 13 13 H 1.08998 * 109.47711 * 54.99907 * 12 11 10 14 14 C 1.47204 * 109.47142 * 294.99226 * 12 11 10 15 15 N 8.22639 * 129.50868 * 94.58801 * 2 1 3 16 16 C 1.53004 * 109.47070 * 175.00094 * 12 11 10 17 17 C 1.50701 * 109.47211 * 185.00010 * 16 12 11 18 18 H 1.08002 * 119.99761 * 359.97438 * 17 16 12 19 19 C 1.37871 * 119.99694 * 180.27574 * 17 16 12 20 20 N 1.31514 * 120.00482 * 359.71466 * 19 17 16 21 21 Si 1.86801 * 119.99746 * 179.72062 * 19 17 16 22 22 H 1.48504 * 109.47266 * 60.00049 * 21 19 17 23 23 H 1.48504 * 109.46970 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47383 * 299.99456 * 21 19 17 25 25 C 1.53775 * 113.61508 * 210.00013 * 5 4 2 26 26 H 1.08998 * 109.46943 * 299.99976 * 1 2 3 27 27 H 1.09004 * 109.47030 * 59.99947 * 1 2 3 28 28 H 1.08991 * 109.47013 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47348 * 240.00668 * 2 1 3 30 30 H 1.08998 * 109.47312 * 60.00250 * 3 2 1 31 31 H 1.09006 * 109.46921 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.46842 * 299.99734 * 3 2 1 33 33 H 1.09003 * 113.61153 * 25.44613 * 7 5 4 34 34 H 1.08997 * 113.61866 * 254.55013 * 7 5 4 35 35 H 1.00904 * 110.99836 * 16.44512 * 10 8 7 36 36 H 1.08999 * 109.47398 * 59.99600 * 11 10 8 37 37 H 1.09000 * 109.46928 * 299.99701 * 11 10 8 38 38 H 1.09000 * 109.47211 * 64.99037 * 16 12 11 39 39 H 1.09007 * 109.46376 * 304.99579 * 16 12 11 40 40 H 0.96995 * 120.00207 * 179.97438 * 20 19 17 41 41 H 1.09004 * 113.61543 * 105.38623 * 25 5 4 42 42 H 1.09002 * 113.61427 * 334.47945 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 3.2660 -1.3245 0.9886 6 1 3.5127 -1.4892 -0.0603 7 6 4.4093 -0.6900 1.7979 8 6 4.8968 -2.1205 2.0821 9 1 5.5895 -2.5041 1.3331 10 7 5.3768 -2.3165 3.4566 11 6 6.8399 -2.4443 3.4900 12 6 7.3012 -2.6473 4.9345 13 1 6.7803 -3.5022 5.3656 14 6 6.9978 -1.4403 5.7207 15 7 6.7636 -0.5077 6.3266 16 6 8.8093 -2.9046 4.9570 17 6 9.2432 -3.2258 6.3639 18 1 8.5162 -3.2441 7.1624 19 6 10.5694 -3.4901 6.6329 20 7 11.4548 -3.4675 5.6607 21 14 11.1086 -3.8806 8.3782 22 1 10.3969 -5.0930 8.8567 23 1 12.5731 -4.1256 8.4008 24 1 10.7844 -2.7341 9.2647 25 6 3.4433 -2.5743 1.8667 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5137 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 3.1301 1.4426 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 4.0717 -0.1588 2.6879 34 1 5.1012 -0.1052 1.1918 35 1 5.0653 -1.5689 4.0585 36 1 7.2931 -1.5384 3.0873 37 1 7.1436 -3.3009 2.8882 38 1 9.3348 -2.0155 4.6086 39 1 9.0441 -3.7449 4.3035 40 1 12.3878 -3.6531 5.8500 41 1 3.3554 -3.5109 1.3160 42 1 2.8416 -2.5583 2.7755 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000514925627.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:02 Heat of formation + Delta-G solvation = -38.766355 kcal Electronic energy + Delta-G solvation = -19593.494377 eV Core-core repulsion = 16572.828324 eV Total energy + Delta-G solvation = -3020.666053 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.64946 -38.83170 -37.79149 -35.86599 -34.87531 -33.25989 -32.18400 -28.31421 -28.09583 -26.55608 -25.06823 -23.58338 -23.50949 -22.22213 -20.66539 -18.53808 -18.22906 -17.95935 -16.84366 -16.63267 -16.20074 -16.01910 -15.40058 -15.15526 -14.69350 -14.61413 -14.37826 -14.04120 -13.80881 -13.58044 -13.42901 -13.35264 -13.19313 -13.08932 -13.02413 -12.78733 -12.47690 -12.44758 -12.37647 -12.10502 -11.97637 -11.76123 -11.63742 -11.54848 -11.33798 -11.04659 -10.54748 -10.34160 -9.30082 -8.19430 -6.27564 1.41216 1.42377 1.49672 1.93003 1.95226 2.41468 2.72338 3.15490 3.24988 3.29237 3.67789 3.69299 3.95547 4.00453 4.03670 4.19122 4.22149 4.30622 4.40523 4.45918 4.66876 4.73793 4.77214 4.85034 4.87197 4.91369 4.94801 4.96681 5.00016 5.11660 5.17099 5.26640 5.31385 5.33782 5.47464 5.63642 5.79499 6.10223 6.22932 6.31798 6.47372 6.74538 6.87116 7.40844 8.91245 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.046809 B = 0.002888 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.037813 B = 9692.269652 C = 9844.459655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.071 3.929 3 C -0.173 4.173 4 O -0.390 6.390 5 C 0.069 3.931 6 H 0.108 0.892 7 C -0.185 4.185 8 C 0.068 3.932 9 H 0.118 0.882 10 N -0.680 5.680 11 C 0.078 3.922 12 C 0.017 3.983 13 H 0.123 0.877 14 C 0.251 3.749 15 N -0.507 5.507 16 C 0.039 3.961 17 C -0.541 4.541 18 H 0.053 0.947 19 C 0.011 3.989 20 N -0.923 5.923 21 Si 0.948 3.052 22 H -0.263 1.263 23 H -0.281 1.281 24 H -0.282 1.282 25 C -0.122 4.122 26 H 0.052 0.948 27 H 0.087 0.913 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.335 0.665 36 H 0.033 0.967 37 H 0.109 0.891 38 H 0.000 1.000 39 H 0.038 0.962 40 H 0.264 0.736 41 H 0.088 0.912 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.387 2.945 -16.243 24.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.014 3.986 3 C -0.231 4.231 4 O -0.309 6.309 5 C 0.011 3.989 6 H 0.125 0.875 7 C -0.225 4.225 8 C -0.042 4.042 9 H 0.136 0.864 10 N -0.310 5.310 11 C -0.052 4.052 12 C -0.005 4.005 13 H 0.140 0.860 14 C -0.065 4.065 15 N -0.184 5.184 16 C 0.000 4.000 17 C -0.579 4.579 18 H 0.071 0.929 19 C -0.188 4.188 20 N -0.563 5.563 21 Si 0.774 3.226 22 H -0.188 1.188 23 H -0.207 1.207 24 H -0.208 1.208 25 C -0.160 4.160 26 H 0.071 0.929 27 H 0.105 0.895 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.153 0.847 36 H 0.052 0.948 37 H 0.128 0.872 38 H 0.019 0.981 39 H 0.057 0.943 40 H 0.073 0.927 41 H 0.106 0.894 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -18.769 3.635 -15.190 24.417 hybrid contribution 1.231 0.687 0.714 1.580 sum -17.538 4.323 -14.476 23.147 Atomic orbital electron populations 1.21884 0.93100 1.02737 1.02890 1.22380 0.95571 0.92704 0.87931 1.22316 1.01262 0.96804 1.02673 1.87977 1.36617 1.69543 1.36759 1.23655 0.82873 0.93246 0.99135 0.87474 1.24206 0.98871 0.98155 1.01234 1.22887 0.96452 0.94636 0.90271 0.86442 1.60506 1.10408 1.50658 1.09380 1.21995 0.87304 1.02200 0.93695 1.19275 0.99383 0.88891 0.92915 0.85975 1.29743 0.90213 0.94110 0.92438 1.81056 1.12468 1.13682 1.11239 1.18982 0.87700 0.96892 0.96387 1.21538 0.93589 1.47510 0.95248 0.92893 1.25706 0.97063 0.95380 1.00611 1.70016 1.02700 1.50162 1.33396 0.85758 0.77371 0.78896 0.80608 1.18762 1.20655 1.20774 1.23288 0.95400 0.97396 0.99906 0.92856 0.89463 0.92114 0.90809 0.93099 0.92990 0.90085 0.91140 0.90888 0.84684 0.94822 0.87238 0.98127 0.94332 0.92683 0.89382 0.90482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.56 71.98 0.69 -1.21 16 2 C 0.07 1.07 3.33 30.60 0.10 1.17 16 3 C -0.17 -2.48 9.53 71.98 0.69 -1.79 16 4 O -0.39 -8.08 10.00 -148.98 -1.49 -9.57 16 5 C 0.07 1.22 4.26 31.12 0.13 1.35 16 6 H 0.11 1.41 7.45 -2.39 -0.02 1.39 16 7 C -0.19 -3.74 7.53 31.12 0.23 -3.50 16 8 C 0.07 1.36 4.18 45.44 0.19 1.55 16 9 H 0.12 2.00 7.87 -2.39 -0.02 1.98 16 10 N -0.68 -17.17 6.62 -488.84 -3.23 -20.40 16 11 C 0.08 2.17 4.96 86.30 0.43 2.60 16 12 C 0.02 0.62 2.42 -12.60 -0.03 0.59 16 13 H 0.12 4.17 8.14 -2.39 -0.02 4.15 16 14 C 0.25 10.17 12.98 89.44 1.16 11.33 16 15 N -0.51 -22.36 18.54 20.01 0.37 -21.99 16 16 C 0.04 1.80 4.42 29.85 0.13 1.94 16 17 C -0.54 -28.80 8.60 25.60 0.22 -28.58 16 18 H 0.05 2.80 7.59 -2.91 -0.02 2.78 16 19 C 0.01 0.63 5.46 84.65 0.46 1.09 16 20 N -0.92 -53.04 13.29 21.45 0.28 -52.75 16 21 Si 0.95 43.65 29.54 68.60 2.03 45.67 16 22 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 23 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 24 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 25 C -0.12 -2.29 7.71 31.12 0.24 -2.05 16 26 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 28 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.07 0.88 7.42 -2.39 -0.02 0.86 16 30 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.07 1.71 7.82 -2.39 -0.02 1.69 16 34 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.33 9.29 7.27 -89.69 -0.65 8.64 16 36 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.11 2.71 8.13 -2.39 -0.02 2.69 16 38 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 39 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 40 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 41 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -62.98 351.97 2.94 -60.05 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: 0.33 Total: 14.50 kcal Atomic # 6 Polarization: -20.16 SS G_CDS: 4.65 Total: -15.51 kcal Atomic # 7 Polarization: -92.56 SS G_CDS: -2.58 Total: -95.14 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: -1.49 Total: -9.57 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -62.98 2.94 -60.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514925627.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.283 kcal (2) G-P(sol) polarization free energy of solvation -62.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds