Wall clock time and date at job start Mon Mar 30 2020 00:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47317 * 2 1 4 4 O 1.42903 * 109.47156 * 120.00242 * 2 1 3 5 5 C 1.42902 * 114.00041 * 89.99945 * 4 2 1 6 6 H 1.09001 * 112.90428 * 18.74584 * 5 4 2 7 7 C 1.53771 * 113.61419 * 150.00014 * 5 4 2 8 8 C 1.53785 * 87.08159 * 139.98146 * 7 5 4 9 9 H 1.08994 * 113.61366 * 89.20018 * 8 7 5 10 10 N 1.46904 * 113.61444 * 220.02340 * 8 7 5 11 11 C 1.46900 * 110.99705 * 204.99904 * 10 8 7 12 12 C 1.52997 * 109.47171 * 179.97438 * 11 10 8 13 13 H 1.09000 * 109.47140 * 305.00052 * 12 11 10 14 14 C 1.47206 * 109.47080 * 64.99999 * 12 11 10 15 15 N 8.22518 * 81.14962 * 128.83451 * 2 1 3 16 16 C 1.53002 * 109.47415 * 185.00028 * 12 11 10 17 17 C 1.50699 * 109.47425 * 175.00239 * 16 12 11 18 18 H 1.08002 * 119.99621 * 359.97438 * 17 16 12 19 19 C 1.37872 * 120.00042 * 180.02562 * 17 16 12 20 20 N 1.31510 * 120.00120 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99904 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47498 * 89.99916 * 21 19 17 23 23 H 1.48505 * 109.46901 * 209.99992 * 21 19 17 24 24 H 1.48506 * 109.47173 * 329.99331 * 21 19 17 25 25 C 1.53780 * 87.07963 * 334.56535 * 8 7 5 26 26 H 1.09010 * 109.46890 * 59.99761 * 1 2 3 27 27 H 1.08995 * 109.47296 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47537 * 300.00069 * 1 2 3 29 29 H 1.09002 * 109.47136 * 240.00196 * 2 1 3 30 30 H 1.09000 * 109.47140 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47110 * 300.00038 * 3 2 1 32 32 H 1.09002 * 109.46857 * 60.00025 * 3 2 1 33 33 H 1.09003 * 113.61666 * 25.43251 * 7 5 4 34 34 H 1.08998 * 113.62155 * 254.52686 * 7 5 4 35 35 H 1.00897 * 111.00229 * 81.04671 * 10 8 7 36 36 H 1.09001 * 109.47612 * 59.99529 * 11 10 8 37 37 H 1.08998 * 109.47323 * 299.99822 * 11 10 8 38 38 H 1.09006 * 109.46551 * 294.99831 * 16 12 11 39 39 H 1.09000 * 109.47059 * 54.99917 * 16 12 11 40 40 H 0.97003 * 120.00093 * 180.02562 * 20 19 17 41 41 H 1.08996 * 113.61572 * 139.97751 * 25 8 7 42 42 H 1.08999 * 113.61823 * 270.88412 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2000 -2.0783 0.9886 6 1 2.2722 -2.3669 -0.0601 7 6 3.3193 -2.6620 1.8667 8 6 2.4060 -3.8801 2.0839 9 1 2.5357 -4.6619 1.3356 10 7 2.4310 -4.3966 3.4589 11 6 2.0627 -5.8182 3.4940 12 6 2.1006 -6.3194 4.9390 13 1 3.0806 -6.1136 5.3694 14 6 1.0648 -5.6292 5.7250 15 7 0.2644 -5.0964 6.3308 16 6 1.8393 -7.8267 4.9632 17 6 1.9976 -8.3416 6.3706 18 1 2.2589 -7.6617 7.1681 19 6 1.8099 -9.6807 6.6400 20 7 1.4923 -10.5086 5.6688 21 14 2.0055 -10.3187 8.3847 22 1 0.6987 -10.2492 9.0866 23 1 2.4727 -11.7278 8.3470 24 1 3.0006 -9.4865 9.1075 25 6 1.2204 -2.9430 1.7994 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.5058 -2.0886 2.7748 34 1 4.2311 -2.8927 1.3159 35 1 1.8308 -3.8526 4.0605 36 1 2.7682 -6.3914 2.8924 37 1 1.0573 -5.9431 3.0920 38 1 0.8254 -8.0253 4.6155 39 1 2.5524 -8.3296 4.3099 40 1 1.3599 -11.4506 5.8584 41 1 0.4378 -3.4004 1.1942 42 1 0.8330 -2.4464 2.6891 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000514925628.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:06 Heat of formation + Delta-G solvation = -20.898514 kcal Electronic energy + Delta-G solvation = -19592.933054 eV Core-core repulsion = 16573.041808 eV Total energy + Delta-G solvation = -3019.891245 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.82569 -37.69356 -36.57815 -34.32807 -33.22648 -32.28823 -30.76131 -27.55244 -26.55508 -25.73788 -23.77410 -22.45843 -21.80677 -21.56103 -19.80054 -17.21837 -16.70423 -16.52577 -15.90965 -15.34365 -15.19770 -14.63001 -14.48920 -14.14916 -13.37472 -13.18845 -13.14959 -12.69468 -12.63466 -12.54378 -12.45413 -12.41752 -12.13680 -11.93650 -11.64334 -11.30386 -11.28694 -11.04388 -10.95934 -10.88434 -10.85346 -10.69833 -10.46822 -10.24596 -9.60191 -9.51809 -9.22047 -8.45423 -8.25404 -6.09461 -4.12472 3.30253 3.36745 3.40201 3.43632 3.57651 3.63123 4.27688 4.41681 4.47385 4.52506 4.62105 4.73039 4.77249 4.82215 4.87640 4.91270 5.16521 5.27948 5.28663 5.42112 5.49045 5.51465 5.54076 5.64192 5.69791 5.74517 5.83657 5.91283 5.91922 5.99708 6.05753 6.16608 6.40778 6.55093 7.13412 7.16982 7.42820 7.45552 7.53405 7.85777 8.23480 8.40799 8.92138 9.53013 11.01456 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.046792 B = 0.002888 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.243829 B = 9691.702308 C = 9843.802830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.079 3.921 3 C -0.151 4.151 4 O -0.366 6.366 5 C 0.063 3.937 6 H 0.085 0.915 7 C -0.124 4.124 8 C 0.069 3.931 9 H 0.101 0.899 10 N -0.678 5.678 11 C 0.067 3.933 12 C 0.006 3.994 13 H 0.111 0.889 14 C 0.241 3.759 15 N -0.477 5.477 16 C 0.033 3.967 17 C -0.526 4.526 18 H 0.057 0.943 19 C 0.062 3.938 20 N -0.892 5.892 21 Si 0.892 3.108 22 H -0.281 1.281 23 H -0.285 1.285 24 H -0.272 1.272 25 C -0.185 4.185 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.094 0.906 34 H 0.072 0.928 35 H 0.342 0.658 36 H 0.092 0.908 37 H 0.035 0.965 38 H 0.024 0.976 39 H 0.040 0.960 40 H 0.262 0.738 41 H 0.066 0.934 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.517 17.772 -15.135 23.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.021 3.979 3 C -0.208 4.208 4 O -0.285 6.285 5 C 0.005 3.995 6 H 0.103 0.897 7 C -0.162 4.162 8 C -0.041 4.041 9 H 0.119 0.881 10 N -0.308 5.308 11 C -0.063 4.063 12 C -0.016 4.016 13 H 0.129 0.871 14 C -0.076 4.076 15 N -0.154 5.154 16 C -0.006 4.006 17 C -0.564 4.564 18 H 0.075 0.925 19 C -0.140 4.140 20 N -0.531 5.531 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.211 1.211 24 H -0.197 1.197 25 C -0.224 4.224 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.113 0.887 34 H 0.091 0.909 35 H 0.161 0.839 36 H 0.110 0.890 37 H 0.053 0.947 38 H 0.042 0.958 39 H 0.058 0.942 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.989 18.351 -14.074 23.212 hybrid contribution -0.788 -0.815 0.380 1.195 sum 1.202 17.536 -13.695 22.282 Atomic orbital electron populations 1.22326 0.96102 1.02446 1.02385 1.22156 0.93663 0.93852 0.88182 1.21874 1.01784 0.94717 1.02407 1.88000 1.85619 1.19794 1.35114 1.23629 0.97206 0.80434 0.98263 0.89695 1.23341 0.96757 0.95901 1.00251 1.22745 0.95080 0.94977 0.91345 0.88121 1.60496 1.58591 1.03816 1.07883 1.22131 0.99825 0.87975 0.96397 1.19345 0.93862 0.97840 0.90569 0.87104 1.29347 0.93707 0.91459 0.93066 1.81052 1.11666 1.12523 1.10128 1.19163 0.98346 0.84757 0.98348 1.21152 1.48110 0.93481 0.93670 0.92493 1.24953 0.94914 0.96985 0.97154 1.69936 1.47504 1.03990 1.31655 0.86588 0.78510 0.78136 0.84823 1.20697 1.21084 1.19703 1.24266 0.98119 0.98396 1.01652 0.91930 0.92409 0.91831 0.92347 0.91995 0.91453 0.91820 0.88748 0.90891 0.83926 0.89016 0.94664 0.95780 0.94189 0.92806 0.91503 0.89156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.37 9.53 37.15 0.35 -1.01 16 2 C 0.08 0.66 3.33 -26.73 -0.09 0.57 16 3 C -0.15 -1.07 9.56 37.16 0.36 -0.72 16 4 O -0.37 -4.00 10.00 -35.23 -0.35 -4.35 16 5 C 0.06 0.61 4.26 -25.92 -0.11 0.50 16 6 H 0.09 0.69 7.46 -51.93 -0.39 0.30 16 7 C -0.12 -1.27 7.71 -25.92 -0.20 -1.47 16 8 C 0.07 0.76 4.18 -66.90 -0.28 0.48 16 9 H 0.10 1.01 7.87 -51.93 -0.41 0.60 16 10 N -0.68 -9.01 6.62 -105.87 -0.70 -9.71 16 11 C 0.07 0.98 4.96 -3.83 -0.02 0.96 16 12 C 0.01 0.11 2.42 -93.40 -0.23 -0.12 16 13 H 0.11 1.97 8.14 -51.93 -0.42 1.55 16 14 C 0.24 4.91 12.98 -20.74 -0.27 4.64 16 15 N -0.48 -10.49 18.54 42.17 0.78 -9.71 16 16 C 0.03 0.75 4.42 -27.88 -0.12 0.63 16 17 C -0.53 -14.06 8.60 -34.44 -0.30 -14.36 16 18 H 0.06 1.52 7.59 -52.49 -0.40 1.12 16 19 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -25.59 13.29 55.43 0.74 -24.86 16 21 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 24 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 25 C -0.18 -1.97 7.53 -25.92 -0.20 -2.16 16 26 H 0.06 0.39 8.14 -51.92 -0.42 -0.04 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.42 7.42 -51.93 -0.39 0.04 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.34 4.83 7.27 -39.29 -0.29 4.55 16 36 H 0.09 1.25 8.13 -51.93 -0.42 0.82 16 37 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.09 1.09 7.82 -51.93 -0.41 0.68 16 LS Contribution 351.97 15.07 5.30 5.30 Total: -1.00 -29.77 351.97 -7.77 -37.54 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -7.32 Total: -0.16 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: -1.20 Total: -10.44 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: 0.82 Total: -44.28 kcal Atomic # 8 Polarization: -4.00 SS G_CDS: -0.35 Total: -4.35 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.77 -7.77 -37.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514925628.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.641 kcal (2) G-P(sol) polarization free energy of solvation -29.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds