Wall clock time and date at job start Mon Mar 30 2020 00:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47317 * 2 1 4 4 O 1.42903 * 109.47156 * 120.00242 * 2 1 3 5 5 C 1.42902 * 114.00041 * 89.99945 * 4 2 1 6 6 H 1.09001 * 112.90428 * 18.74584 * 5 4 2 7 7 C 1.53771 * 113.61419 * 150.00014 * 5 4 2 8 8 C 1.53785 * 87.08159 * 139.98146 * 7 5 4 9 9 H 1.08994 * 113.61366 * 89.20018 * 8 7 5 10 10 N 1.46904 * 113.61444 * 220.02340 * 8 7 5 11 11 C 1.46900 * 110.99705 * 204.99904 * 10 8 7 12 12 C 1.52997 * 109.47171 * 179.97438 * 11 10 8 13 13 H 1.09000 * 109.47140 * 305.00052 * 12 11 10 14 14 C 1.47206 * 109.47080 * 64.99999 * 12 11 10 15 15 N 8.22518 * 81.14962 * 128.83451 * 2 1 3 16 16 C 1.53002 * 109.47415 * 185.00028 * 12 11 10 17 17 C 1.50699 * 109.47425 * 175.00239 * 16 12 11 18 18 H 1.08002 * 119.99621 * 359.97438 * 17 16 12 19 19 C 1.37872 * 120.00042 * 180.02562 * 17 16 12 20 20 N 1.31510 * 120.00120 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99904 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47498 * 89.99916 * 21 19 17 23 23 H 1.48505 * 109.46901 * 209.99992 * 21 19 17 24 24 H 1.48506 * 109.47173 * 329.99331 * 21 19 17 25 25 C 1.53780 * 87.07963 * 334.56535 * 8 7 5 26 26 H 1.09010 * 109.46890 * 59.99761 * 1 2 3 27 27 H 1.08995 * 109.47296 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47537 * 300.00069 * 1 2 3 29 29 H 1.09002 * 109.47136 * 240.00196 * 2 1 3 30 30 H 1.09000 * 109.47140 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47110 * 300.00038 * 3 2 1 32 32 H 1.09002 * 109.46857 * 60.00025 * 3 2 1 33 33 H 1.09003 * 113.61666 * 25.43251 * 7 5 4 34 34 H 1.08998 * 113.62155 * 254.52686 * 7 5 4 35 35 H 1.00897 * 111.00229 * 81.04671 * 10 8 7 36 36 H 1.09001 * 109.47612 * 59.99529 * 11 10 8 37 37 H 1.08998 * 109.47323 * 299.99822 * 11 10 8 38 38 H 1.09006 * 109.46551 * 294.99831 * 16 12 11 39 39 H 1.09000 * 109.47059 * 54.99917 * 16 12 11 40 40 H 0.97003 * 120.00093 * 180.02562 * 20 19 17 41 41 H 1.08996 * 113.61572 * 139.97751 * 25 8 7 42 42 H 1.08999 * 113.61823 * 270.88412 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2000 -2.0783 0.9886 6 1 2.2722 -2.3669 -0.0601 7 6 3.3193 -2.6620 1.8667 8 6 2.4060 -3.8801 2.0839 9 1 2.5357 -4.6619 1.3356 10 7 2.4310 -4.3966 3.4589 11 6 2.0627 -5.8182 3.4940 12 6 2.1006 -6.3194 4.9390 13 1 3.0806 -6.1136 5.3694 14 6 1.0648 -5.6292 5.7250 15 7 0.2644 -5.0964 6.3308 16 6 1.8393 -7.8267 4.9632 17 6 1.9976 -8.3416 6.3706 18 1 2.2589 -7.6617 7.1681 19 6 1.8099 -9.6807 6.6400 20 7 1.4923 -10.5086 5.6688 21 14 2.0055 -10.3187 8.3847 22 1 0.6987 -10.2492 9.0866 23 1 2.4727 -11.7278 8.3470 24 1 3.0006 -9.4865 9.1075 25 6 1.2204 -2.9430 1.7994 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.5058 -2.0886 2.7748 34 1 4.2311 -2.8927 1.3159 35 1 1.8308 -3.8526 4.0605 36 1 2.7682 -6.3914 2.8924 37 1 1.0573 -5.9431 3.0920 38 1 0.8254 -8.0253 4.6155 39 1 2.5524 -8.3296 4.3099 40 1 1.3599 -11.4506 5.8584 41 1 0.4378 -3.4004 1.1942 42 1 0.8330 -2.4464 2.6891 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000514925628.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:05 Heat of formation + Delta-G solvation = -38.796515 kcal Electronic energy + Delta-G solvation = -19593.709169 eV Core-core repulsion = 16573.041808 eV Total energy + Delta-G solvation = -3020.667361 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.64954 -38.83168 -37.79091 -35.86706 -34.87663 -33.26018 -32.18415 -28.31527 -28.09612 -26.55596 -25.06884 -23.58324 -23.50968 -22.22154 -20.66475 -18.54113 -18.22886 -17.96010 -16.84425 -16.63083 -16.19976 -16.01762 -15.40066 -15.15394 -14.69326 -14.61865 -14.37697 -14.04709 -13.80852 -13.58024 -13.42876 -13.35225 -13.19248 -13.08428 -13.02722 -12.80448 -12.47634 -12.45115 -12.36130 -12.10506 -11.97226 -11.75879 -11.63673 -11.54795 -11.33380 -11.04189 -10.55586 -10.34106 -9.30009 -8.19687 -6.27686 1.39853 1.41927 1.51332 1.93139 1.95345 2.41354 2.72406 3.15403 3.25024 3.29262 3.67857 3.69299 3.95572 4.00481 4.03681 4.19151 4.22170 4.30669 4.40517 4.45917 4.66890 4.73774 4.77255 4.85081 4.87251 4.91399 4.94796 4.96670 5.00025 5.11701 5.17096 5.26670 5.31418 5.33799 5.47623 5.63549 5.79533 6.10244 6.22922 6.31881 6.47404 6.74585 6.87204 7.40780 8.91201 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.046792 B = 0.002888 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.243829 B = 9691.702308 C = 9843.802830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.071 3.929 3 C -0.149 4.149 4 O -0.390 6.390 5 C 0.069 3.931 6 H 0.108 0.892 7 C -0.122 4.122 8 C 0.068 3.932 9 H 0.118 0.882 10 N -0.680 5.680 11 C 0.078 3.922 12 C 0.017 3.983 13 H 0.122 0.878 14 C 0.251 3.749 15 N -0.506 5.506 16 C 0.039 3.961 17 C -0.540 4.540 18 H 0.053 0.947 19 C 0.011 3.989 20 N -0.923 5.923 21 Si 0.948 3.052 22 H -0.284 1.284 23 H -0.278 1.278 24 H -0.265 1.265 25 C -0.185 4.185 26 H 0.080 0.920 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.052 0.948 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.335 0.665 36 H 0.109 0.891 37 H 0.033 0.967 38 H 0.000 1.000 39 H 0.038 0.962 40 H 0.264 0.736 41 H 0.072 0.928 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.334 18.330 -16.259 24.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.014 3.986 3 C -0.206 4.206 4 O -0.309 6.309 5 C 0.011 3.989 6 H 0.125 0.875 7 C -0.160 4.160 8 C -0.042 4.042 9 H 0.136 0.864 10 N -0.310 5.310 11 C -0.052 4.052 12 C -0.005 4.005 13 H 0.140 0.860 14 C -0.065 4.065 15 N -0.184 5.184 16 C 0.000 4.000 17 C -0.578 4.578 18 H 0.071 0.929 19 C -0.188 4.188 20 N -0.563 5.563 21 Si 0.774 3.226 22 H -0.210 1.210 23 H -0.203 1.203 24 H -0.189 1.189 25 C -0.225 4.225 26 H 0.099 0.901 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.153 0.847 36 H 0.128 0.872 37 H 0.052 0.948 38 H 0.019 0.981 39 H 0.057 0.943 40 H 0.073 0.927 41 H 0.091 0.909 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.816 18.925 -15.204 24.439 hybrid contribution -1.055 -0.946 0.708 1.584 sum 1.761 17.979 -14.496 23.162 Atomic orbital electron populations 1.22313 0.95922 1.02143 1.02674 1.22378 0.93882 0.94394 0.87932 1.21885 1.01703 0.94136 1.02889 1.87982 1.85810 1.20358 1.36748 1.23658 0.96095 0.80024 0.99133 0.87456 1.23286 0.97534 0.95270 0.99901 1.22888 0.95513 0.95589 0.90256 0.86444 1.60500 1.58251 1.02847 1.09361 1.21992 1.00409 0.89100 0.93689 1.19273 0.93541 0.94735 0.92917 0.85997 1.29734 0.93430 0.90902 0.92443 1.81051 1.12608 1.13523 1.11230 1.18986 0.96805 0.87802 0.96399 1.21565 1.47322 0.93621 0.95262 0.92886 1.25706 0.94967 0.97514 1.00602 1.70025 1.48636 1.04272 1.33360 0.85703 0.78286 0.77966 0.80686 1.21044 1.20273 1.18913 1.24208 0.98416 0.98616 1.01230 0.90085 0.92987 0.93101 0.90806 0.92115 0.89457 0.92864 0.90484 0.89383 0.84681 0.87246 0.94821 0.98118 0.94330 0.92694 0.90892 0.91137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.48 9.53 71.98 0.69 -1.79 16 2 C 0.07 1.07 3.33 30.59 0.10 1.17 16 3 C -0.15 -1.90 9.56 71.98 0.69 -1.21 16 4 O -0.39 -8.08 10.00 -148.98 -1.49 -9.57 16 5 C 0.07 1.22 4.26 31.12 0.13 1.35 16 6 H 0.11 1.41 7.46 -2.39 -0.02 1.40 16 7 C -0.12 -2.29 7.71 31.12 0.24 -2.05 16 8 C 0.07 1.36 4.18 45.44 0.19 1.55 16 9 H 0.12 2.00 7.87 -2.39 -0.02 1.98 16 10 N -0.68 -17.17 6.62 -488.85 -3.23 -20.40 16 11 C 0.08 2.17 4.96 86.30 0.43 2.60 16 12 C 0.02 0.62 2.42 -12.60 -0.03 0.59 16 13 H 0.12 4.16 8.14 -2.39 -0.02 4.14 16 14 C 0.25 10.16 12.98 89.44 1.16 11.32 16 15 N -0.51 -22.30 18.54 20.01 0.37 -21.93 16 16 C 0.04 1.79 4.42 29.85 0.13 1.92 16 17 C -0.54 -28.73 8.60 25.60 0.22 -28.51 16 18 H 0.05 2.81 7.59 -2.91 -0.02 2.78 16 19 C 0.01 0.61 5.46 84.65 0.46 1.07 16 20 N -0.92 -53.03 13.29 21.44 0.28 -52.75 16 21 Si 0.95 43.65 29.54 68.60 2.03 45.68 16 22 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 23 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 24 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 25 C -0.19 -3.74 7.53 31.12 0.23 -3.50 16 26 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 27 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.07 0.88 7.42 -2.39 -0.02 0.86 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.33 9.29 7.27 -89.70 -0.65 8.64 16 36 H 0.11 2.70 8.13 -2.39 -0.02 2.68 16 37 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.00 0.02 8.14 -2.38 -0.02 0.00 16 39 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 41 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.07 1.71 7.82 -2.39 -0.02 1.69 16 Total: -1.00 -62.96 351.97 2.94 -60.03 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 0.33 Total: 14.43 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: 4.65 Total: -15.49 kcal Atomic # 7 Polarization: -92.50 SS G_CDS: -2.58 Total: -95.07 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: -1.49 Total: -9.57 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -62.96 2.94 -60.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514925628.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.230 kcal (2) G-P(sol) polarization free energy of solvation -62.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds