Wall clock time and date at job start Mon Mar 30 2020 01:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.45754 * 117.94843 * 2 1 4 4 C 1.52734 * 110.58712 * 198.89413 * 3 2 1 5 5 C 1.53343 * 108.82222 * 309.61013 * 4 3 2 6 6 C 1.53077 * 108.42298 * 67.37323 * 5 4 3 7 7 H 1.08997 * 109.39785 * 71.22992 * 6 5 4 8 8 N 1.46898 * 109.39781 * 190.97176 * 6 5 4 9 9 C 1.46851 * 111.00050 * 297.28376 * 8 6 5 10 10 C 1.53040 * 109.52341 * 185.84011 * 9 8 6 11 11 C 1.53115 * 109.28075 * 300.82450 * 10 9 8 12 12 C 1.50698 * 109.57507 * 177.58733 * 11 10 9 13 13 H 1.07994 * 120.00139 * 245.61726 * 12 11 10 14 14 C 1.37874 * 119.99739 * 65.62469 * 12 11 10 15 15 N 1.31517 * 120.00178 * 6.84601 * 14 12 11 16 16 Si 1.86804 * 119.99934 * 186.84798 * 14 12 11 17 17 H 1.48502 * 109.47154 * 84.99068 * 16 14 12 18 18 H 1.48500 * 109.46739 * 204.98824 * 16 14 12 19 19 H 1.48494 * 109.47071 * 324.98753 * 16 14 12 20 20 C 1.53121 * 109.16040 * 57.65244 * 11 10 9 21 21 C 1.46847 * 111.00410 * 61.49810 * 8 6 5 22 22 C 1.33351 * 117.94506 * 180.26621 * 2 1 3 23 23 O 1.21286 * 118.24724 * 357.79317 * 22 2 1 24 24 H 1.09005 * 109.47339 * 179.73726 * 1 2 3 25 25 H 1.09000 * 109.47196 * 299.73578 * 1 2 3 26 26 H 1.08993 * 109.47345 * 59.73133 * 1 2 3 27 27 H 1.09001 * 109.29589 * 319.38896 * 3 2 1 28 28 H 1.08994 * 109.29728 * 78.76496 * 3 2 1 29 29 H 1.08998 * 109.66276 * 189.73396 * 4 3 2 30 30 H 1.09001 * 109.53110 * 69.41536 * 4 3 2 31 31 H 1.09001 * 109.67346 * 307.63938 * 5 4 3 32 32 H 1.09005 * 109.70610 * 187.11840 * 5 4 3 33 33 H 1.08996 * 109.46519 * 305.86113 * 9 8 6 34 34 H 1.08997 * 109.46060 * 65.83149 * 9 8 6 35 35 H 1.08997 * 109.50436 * 180.88106 * 10 9 8 36 36 H 1.09006 * 109.53042 * 60.78426 * 10 9 8 37 37 H 1.09001 * 109.52443 * 297.75291 * 11 10 9 38 38 H 0.96997 * 120.00281 * 180.02562 * 15 14 12 39 39 H 1.09000 * 109.50244 * 182.40683 * 20 11 10 40 40 H 1.09000 * 109.50215 * 62.28689 * 20 11 10 41 41 H 1.09000 * 109.45790 * 294.17461 * 21 8 6 42 42 H 1.08998 * 109.46213 * 54.15170 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1481 1.2875 0.0000 4 6 3.5948 1.1280 -0.4630 5 6 4.2492 -0.0030 0.3396 6 6 3.5838 -1.3239 -0.0548 7 1 3.8880 -1.5948 -1.0658 8 7 4.0022 -2.3786 0.8782 9 6 5.4516 -2.6023 0.8039 10 6 5.8296 -3.8007 1.6774 11 6 5.4105 -3.5242 3.1239 12 6 5.7259 -4.7242 3.9791 13 1 4.9253 -5.2901 4.4319 14 6 7.0367 -5.0994 4.1837 15 7 8.0150 -4.3367 3.7468 16 14 7.4233 -6.6914 5.0814 17 1 7.3991 -7.8213 4.1181 18 1 8.7703 -6.5966 5.6994 19 1 6.4080 -6.9217 6.1402 20 6 3.9052 -3.2469 3.1666 21 6 3.5830 -2.0645 2.2500 22 6 2.0899 -1.1780 -0.0055 23 8 1.4158 -2.1856 0.0310 24 1 -0.3634 -1.0277 -0.0047 25 1 -0.3633 0.5097 0.8923 26 1 -0.3633 0.5180 -0.8875 27 1 1.6270 1.9718 -0.6697 28 1 2.1399 1.6997 1.0090 29 1 4.1384 2.0576 -0.2948 30 1 3.6126 0.8808 -1.5245 31 1 4.1087 0.1748 1.4058 32 1 5.3144 -0.0465 0.1120 33 1 5.7359 -2.8019 -0.2293 34 1 5.9748 -1.7146 1.1593 35 1 6.9075 -3.9568 1.6344 36 1 5.3180 -4.6921 1.3143 37 1 5.9515 -2.6561 3.5003 38 1 8.9372 -4.6008 3.8904 39 1 3.6082 -3.0072 4.1876 40 1 3.3628 -4.1292 2.8268 41 1 4.1149 -1.1793 2.5985 42 1 2.5099 -1.8737 2.2672 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543808069.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:26 Heat of formation + Delta-G solvation = -33.003839 kcal Electronic energy + Delta-G solvation = -21543.438166 eV Core-core repulsion = 18523.021995 eV Total energy + Delta-G solvation = -3020.416171 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.75416 -38.02006 -36.39692 -34.58615 -32.65763 -31.06033 -29.85287 -28.34497 -27.15920 -25.62119 -23.65178 -22.44811 -22.17935 -21.22148 -18.78917 -18.07338 -16.70082 -16.44520 -16.35230 -15.94367 -14.91299 -14.61079 -14.42158 -14.11471 -13.80454 -13.44009 -13.20824 -12.73627 -12.73023 -12.47779 -12.29590 -12.12965 -11.71584 -11.46569 -11.38363 -11.27062 -11.16798 -10.88029 -10.76329 -10.43475 -10.10490 -10.04302 -9.48018 -9.35309 -8.85485 -8.75256 -8.70910 -8.25622 -7.70328 -5.95489 -3.96789 2.74924 2.96359 3.35992 3.41840 3.45411 4.27552 4.50144 4.55182 4.57219 4.64393 4.89548 5.17324 5.23684 5.28247 5.35893 5.36920 5.43822 5.58229 5.68438 5.73548 5.77903 5.81891 5.88401 6.06669 6.13718 6.21597 6.35913 6.38265 6.55943 6.67548 6.88645 7.10447 7.16189 7.33729 7.45215 7.60767 7.67023 7.84749 8.07039 8.10156 8.32283 8.53228 9.07091 9.66579 11.13501 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.038556 B = 0.004680 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.037926 B = 5981.122590 C = 6319.936721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.615 5.615 3 C 0.116 3.884 4 C -0.131 4.131 5 C -0.163 4.163 6 C 0.076 3.924 7 H 0.107 0.893 8 N -0.510 5.510 9 C 0.059 3.941 10 C -0.100 4.100 11 C 0.048 3.952 12 C -0.510 4.510 13 H 0.054 0.946 14 C 0.062 3.938 15 N -0.893 5.893 16 Si 0.887 3.113 17 H -0.280 1.280 18 H -0.289 1.289 19 H -0.275 1.275 20 C -0.104 4.104 21 C 0.059 3.941 22 C 0.522 3.478 23 O -0.526 6.526 24 H 0.091 0.909 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.029 0.971 35 H 0.078 0.922 36 H 0.047 0.953 37 H 0.027 0.973 38 H 0.259 0.741 39 H 0.050 0.950 40 H 0.058 0.942 41 H 0.027 0.973 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.292 13.976 -9.280 19.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.350 5.350 3 C -0.007 4.007 4 C -0.169 4.169 5 C -0.202 4.202 6 C -0.036 4.036 7 H 0.124 0.876 8 N -0.234 5.234 9 C -0.068 4.068 10 C -0.138 4.138 11 C 0.029 3.971 12 C -0.548 4.548 13 H 0.072 0.928 14 C -0.138 4.138 15 N -0.532 5.532 16 Si 0.715 3.285 17 H -0.206 1.206 18 H -0.214 1.214 19 H -0.201 1.201 20 C -0.142 4.142 21 C -0.069 4.069 22 C 0.309 3.691 23 O -0.401 6.401 24 H 0.110 0.890 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.047 0.953 35 H 0.097 0.903 36 H 0.066 0.934 37 H 0.045 0.955 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.045 0.955 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.662 12.974 -9.386 18.702 hybrid contribution 0.726 0.099 0.668 0.992 sum -8.935 13.073 -8.718 18.076 Atomic orbital electron populations 1.21709 0.79955 1.04669 1.00813 1.47275 1.07247 1.06069 1.74456 1.21312 0.93270 0.84647 1.01480 1.21788 0.94522 0.99974 1.00658 1.22446 1.01323 0.94926 1.01495 1.21633 0.90654 0.91330 0.99977 0.87566 1.62032 1.15903 1.39383 1.06120 1.22289 0.84889 0.99703 0.99930 1.21611 1.01857 0.94277 0.96074 1.18689 0.89219 0.96963 0.92225 1.21183 0.91832 1.12042 1.29758 0.92758 1.24952 0.96472 0.96698 0.95722 1.69942 0.99091 1.36709 1.47412 0.86690 0.77386 0.84460 0.79943 1.20615 1.21447 1.20050 1.21659 1.00386 0.96059 0.96114 1.22181 0.98417 0.98163 0.88118 1.20095 0.90685 0.82609 0.75676 1.90695 1.65647 1.35555 1.48191 0.89003 0.92496 0.92581 0.90883 0.91918 0.89820 0.91024 0.90517 0.90164 0.92445 0.95295 0.90311 0.93418 0.95525 0.93160 0.93155 0.92360 0.95531 0.92621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.73 10.48 59.85 0.63 1.36 16 2 N -0.61 -7.42 3.21 -182.97 -0.59 -8.00 16 3 C 0.12 1.00 6.40 -4.58 -0.03 0.97 16 4 C -0.13 -1.12 6.01 -26.69 -0.16 -1.28 16 5 C -0.16 -1.95 4.55 -26.51 -0.12 -2.07 16 6 C 0.08 1.15 2.46 -69.08 -0.17 0.98 16 7 H 0.11 1.51 8.11 -51.93 -0.42 1.09 16 8 N -0.51 -9.56 4.42 -228.34 -1.01 -10.57 16 9 C 0.06 1.14 4.99 -3.83 -0.02 1.12 16 10 C -0.10 -2.36 5.19 -26.65 -0.14 -2.50 16 11 C 0.05 1.20 2.03 -91.65 -0.19 1.02 16 12 C -0.51 -14.30 8.49 -34.44 -0.29 -14.59 16 13 H 0.05 1.52 7.76 -52.49 -0.41 1.12 16 14 C 0.06 1.75 5.26 -17.82 -0.09 1.66 16 15 N -0.89 -25.70 12.07 55.43 0.67 -25.03 16 16 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 C -0.10 -2.33 5.32 -26.65 -0.14 -2.47 16 21 C 0.06 1.14 4.72 -3.84 -0.02 1.12 16 22 C 0.52 8.21 5.68 -11.87 -0.07 8.14 16 23 O -0.53 -10.37 15.30 5.55 0.08 -10.28 16 24 H 0.09 1.15 6.59 -51.93 -0.34 0.81 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.47 8.10 -51.93 -0.42 0.04 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 31 H 0.08 1.02 6.06 -51.93 -0.31 0.70 16 32 H 0.08 0.95 7.22 -51.93 -0.37 0.58 16 33 H 0.06 1.00 8.10 -51.93 -0.42 0.58 16 34 H 0.03 0.55 6.94 -51.93 -0.36 0.19 16 35 H 0.08 2.03 6.88 -51.93 -0.36 1.67 16 36 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.03 0.73 8.11 -51.93 -0.42 0.31 16 38 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 41 H 0.03 0.50 6.42 -51.93 -0.33 0.16 16 42 H 0.06 1.08 6.63 -51.93 -0.34 0.73 16 LS Contribution 317.78 15.07 4.79 4.79 Total: -1.00 -31.73 317.78 -8.92 -40.65 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -7.03 Total: -1.62 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -0.81 Total: -6.56 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: -0.93 Total: -43.60 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.08 Total: -10.28 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.73 -8.92 -40.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543808069.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.646 kcal (2) G-P(sol) polarization free energy of solvation -31.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds