Wall clock time and date at job start Mon Mar 30 2020 01:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.45754 * 117.94843 * 2 1 4 4 C 1.52734 * 110.58712 * 198.89413 * 3 2 1 5 5 C 1.53343 * 108.82222 * 309.61013 * 4 3 2 6 6 C 1.53077 * 108.42298 * 67.37323 * 5 4 3 7 7 H 1.08997 * 109.39785 * 71.22992 * 6 5 4 8 8 N 1.46898 * 109.39781 * 190.97176 * 6 5 4 9 9 C 1.46851 * 111.00050 * 297.28376 * 8 6 5 10 10 C 1.53040 * 109.52341 * 185.84011 * 9 8 6 11 11 C 1.53115 * 109.28075 * 300.82450 * 10 9 8 12 12 C 1.50698 * 109.57507 * 177.58733 * 11 10 9 13 13 H 1.07994 * 120.00139 * 245.61726 * 12 11 10 14 14 C 1.37874 * 119.99739 * 65.62469 * 12 11 10 15 15 N 1.31517 * 120.00178 * 6.84601 * 14 12 11 16 16 Si 1.86804 * 119.99934 * 186.84798 * 14 12 11 17 17 H 1.48502 * 109.47154 * 84.99068 * 16 14 12 18 18 H 1.48500 * 109.46739 * 204.98824 * 16 14 12 19 19 H 1.48494 * 109.47071 * 324.98753 * 16 14 12 20 20 C 1.53121 * 109.16040 * 57.65244 * 11 10 9 21 21 C 1.46847 * 111.00410 * 61.49810 * 8 6 5 22 22 C 1.33351 * 117.94506 * 180.26621 * 2 1 3 23 23 O 1.21286 * 118.24724 * 357.79317 * 22 2 1 24 24 H 1.09005 * 109.47339 * 179.73726 * 1 2 3 25 25 H 1.09000 * 109.47196 * 299.73578 * 1 2 3 26 26 H 1.08993 * 109.47345 * 59.73133 * 1 2 3 27 27 H 1.09001 * 109.29589 * 319.38896 * 3 2 1 28 28 H 1.08994 * 109.29728 * 78.76496 * 3 2 1 29 29 H 1.08998 * 109.66276 * 189.73396 * 4 3 2 30 30 H 1.09001 * 109.53110 * 69.41536 * 4 3 2 31 31 H 1.09001 * 109.67346 * 307.63938 * 5 4 3 32 32 H 1.09005 * 109.70610 * 187.11840 * 5 4 3 33 33 H 1.08996 * 109.46519 * 305.86113 * 9 8 6 34 34 H 1.08997 * 109.46060 * 65.83149 * 9 8 6 35 35 H 1.08997 * 109.50436 * 180.88106 * 10 9 8 36 36 H 1.09006 * 109.53042 * 60.78426 * 10 9 8 37 37 H 1.09001 * 109.52443 * 297.75291 * 11 10 9 38 38 H 0.96997 * 120.00281 * 180.02562 * 15 14 12 39 39 H 1.09000 * 109.50244 * 182.40683 * 20 11 10 40 40 H 1.09000 * 109.50215 * 62.28689 * 20 11 10 41 41 H 1.09000 * 109.45790 * 294.17461 * 21 8 6 42 42 H 1.08998 * 109.46213 * 54.15170 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1481 1.2875 0.0000 4 6 3.5948 1.1280 -0.4630 5 6 4.2492 -0.0030 0.3396 6 6 3.5838 -1.3239 -0.0548 7 1 3.8880 -1.5948 -1.0658 8 7 4.0022 -2.3786 0.8782 9 6 5.4516 -2.6023 0.8039 10 6 5.8296 -3.8007 1.6774 11 6 5.4105 -3.5242 3.1239 12 6 5.7259 -4.7242 3.9791 13 1 4.9253 -5.2901 4.4319 14 6 7.0367 -5.0994 4.1837 15 7 8.0150 -4.3367 3.7468 16 14 7.4233 -6.6914 5.0814 17 1 7.3991 -7.8213 4.1181 18 1 8.7703 -6.5966 5.6994 19 1 6.4080 -6.9217 6.1402 20 6 3.9052 -3.2469 3.1666 21 6 3.5830 -2.0645 2.2500 22 6 2.0899 -1.1780 -0.0055 23 8 1.4158 -2.1856 0.0310 24 1 -0.3634 -1.0277 -0.0047 25 1 -0.3633 0.5097 0.8923 26 1 -0.3633 0.5180 -0.8875 27 1 1.6270 1.9718 -0.6697 28 1 2.1399 1.6997 1.0090 29 1 4.1384 2.0576 -0.2948 30 1 3.6126 0.8808 -1.5245 31 1 4.1087 0.1748 1.4058 32 1 5.3144 -0.0465 0.1120 33 1 5.7359 -2.8019 -0.2293 34 1 5.9748 -1.7146 1.1593 35 1 6.9075 -3.9568 1.6344 36 1 5.3180 -4.6921 1.3143 37 1 5.9515 -2.6561 3.5003 38 1 8.9372 -4.6008 3.8904 39 1 3.6082 -3.0072 4.1876 40 1 3.3628 -4.1292 2.8268 41 1 4.1149 -1.1793 2.5985 42 1 2.5099 -1.8737 2.2672 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000543808069.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:25 Heat of formation + Delta-G solvation = -54.206129 kcal Electronic energy + Delta-G solvation = -21544.357566 eV Core-core repulsion = 18523.021995 eV Total energy + Delta-G solvation = -3021.335572 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.89867 -39.53425 -37.45917 -36.16185 -34.23820 -32.61450 -31.56602 -29.65101 -28.02826 -27.34618 -25.07229 -23.96330 -23.26389 -22.86679 -20.36419 -19.28737 -18.47739 -17.74985 -17.52541 -17.16820 -16.54565 -16.01796 -15.71624 -15.24710 -15.16164 -14.81510 -14.47667 -14.37870 -14.18463 -13.96485 -13.48972 -13.19654 -13.12109 -13.03280 -12.77384 -12.66333 -12.41996 -12.31250 -12.26402 -12.05070 -12.02599 -11.68179 -11.36352 -10.83437 -10.72442 -10.57292 -10.39839 -9.68457 -9.13311 -8.11448 -6.20161 1.40473 1.42246 1.51036 1.57324 2.02199 2.44245 2.96941 3.18306 3.52508 3.76652 3.81117 3.99792 4.12799 4.20102 4.25885 4.39168 4.47833 4.49715 4.53396 4.60430 4.66819 4.69353 4.81707 4.84857 4.91491 4.97166 4.98517 5.05010 5.08979 5.17877 5.24972 5.31426 5.49046 5.49970 5.61579 5.92580 5.96362 6.14795 6.21109 6.40561 6.47827 6.89688 7.20718 7.46252 8.96529 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.038556 B = 0.004680 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.037926 B = 5981.122590 C = 6319.936721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.609 5.609 3 C 0.108 3.892 4 C -0.123 4.123 5 C -0.157 4.157 6 C 0.074 3.926 7 H 0.116 0.884 8 N -0.530 5.530 9 C 0.073 3.927 10 C -0.092 4.092 11 C 0.048 3.952 12 C -0.537 4.537 13 H 0.045 0.955 14 C 0.018 3.982 15 N -0.916 5.916 16 Si 0.949 3.051 17 H -0.276 1.276 18 H -0.281 1.281 19 H -0.272 1.272 20 C -0.098 4.098 21 C 0.074 3.926 22 C 0.516 3.484 23 O -0.579 6.579 24 H 0.062 0.938 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.107 0.893 28 H 0.072 0.928 29 H 0.112 0.888 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.035 0.965 35 H 0.053 0.947 36 H 0.029 0.971 37 H 0.001 0.999 38 H 0.261 0.739 39 H 0.050 0.950 40 H 0.040 0.960 41 H 0.036 0.964 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.642 16.085 -10.211 21.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.342 5.342 3 C -0.014 4.014 4 C -0.161 4.161 5 C -0.196 4.196 6 C -0.038 4.038 7 H 0.133 0.867 8 N -0.254 5.254 9 C -0.054 4.054 10 C -0.130 4.130 11 C 0.030 3.970 12 C -0.575 4.575 13 H 0.063 0.937 14 C -0.180 4.180 15 N -0.555 5.555 16 Si 0.775 3.225 17 H -0.202 1.202 18 H -0.206 1.206 19 H -0.196 1.196 20 C -0.136 4.136 21 C -0.053 4.053 22 C 0.304 3.696 23 O -0.458 6.458 24 H 0.081 0.919 25 H 0.093 0.907 26 H 0.104 0.896 27 H 0.125 0.875 28 H 0.090 0.910 29 H 0.130 0.870 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.048 0.952 37 H 0.019 0.981 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.054 0.946 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.023 15.144 -10.325 20.890 hybrid contribution 0.796 -0.503 0.953 1.340 sum -9.226 14.641 -9.372 19.680 Atomic orbital electron populations 1.21844 0.78900 1.03551 1.03124 1.47414 1.08182 1.06267 1.72360 1.21650 0.93437 0.83223 1.03050 1.21802 0.94313 0.99614 1.00410 1.22374 1.01508 0.94430 1.01270 1.21717 0.90848 0.91892 0.99304 0.86673 1.61857 1.15195 1.42182 1.06199 1.22047 0.85646 0.97737 1.00018 1.21389 0.99889 0.95718 0.96042 1.18616 0.90711 0.94949 0.92747 1.21519 0.92078 1.13197 1.30678 0.93653 1.25659 0.96250 0.99630 0.96509 1.70041 0.99351 1.38022 1.48078 0.85715 0.77380 0.80568 0.78869 1.20172 1.20612 1.19642 1.21527 0.98122 0.96854 0.97124 1.21929 0.98457 0.96774 0.88190 1.20202 0.90732 0.83132 0.75522 1.90676 1.66575 1.37542 1.51048 0.91862 0.90692 0.89637 0.87507 0.90991 0.87011 0.90112 0.91785 0.89859 0.90283 0.94705 0.92845 0.95184 0.98128 0.92961 0.93081 0.94120 0.94563 0.92547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.25 10.48 127.77 1.34 2.58 16 2 N -0.61 -13.16 3.21 -851.98 -2.74 -15.89 16 3 C 0.11 1.40 6.40 86.43 0.55 1.95 16 4 C -0.12 -1.59 6.01 30.62 0.18 -1.40 16 5 C -0.16 -3.36 4.55 30.73 0.14 -3.22 16 6 C 0.07 2.12 2.46 44.03 0.11 2.22 16 7 H 0.12 3.08 8.11 -2.39 -0.02 3.06 16 8 N -0.53 -19.74 4.42 -876.34 -3.87 -23.62 16 9 C 0.07 2.79 4.99 86.33 0.43 3.22 16 10 C -0.09 -4.48 5.19 30.65 0.16 -4.32 16 11 C 0.05 2.53 2.03 -11.46 -0.02 2.51 16 12 C -0.54 -31.01 8.49 25.60 0.22 -30.79 16 13 H 0.05 2.63 7.76 -2.91 -0.02 2.60 16 14 C 0.02 1.05 5.26 84.65 0.45 1.49 16 15 N -0.92 -53.60 12.07 21.45 0.26 -53.34 16 16 Si 0.95 44.90 29.54 68.60 2.03 46.93 16 17 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 18 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 19 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 20 C -0.10 -4.53 5.32 30.65 0.16 -4.37 16 21 C 0.07 2.88 4.72 86.32 0.41 3.29 16 22 C 0.52 15.70 5.68 87.71 0.50 16.20 16 23 O -0.58 -23.09 15.30 -3.05 -0.05 -23.14 16 24 H 0.06 1.56 6.59 -2.38 -0.02 1.55 16 25 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.11 0.77 8.10 -2.39 -0.02 0.75 16 28 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.08 0.95 8.12 -2.39 -0.02 0.93 16 31 H 0.06 1.55 6.06 -2.39 -0.01 1.54 16 32 H 0.08 1.75 7.22 -2.38 -0.02 1.73 16 33 H 0.08 2.68 8.10 -2.39 -0.02 2.66 16 34 H 0.03 1.30 6.94 -2.39 -0.02 1.28 16 35 H 0.05 2.84 6.88 -2.39 -0.02 2.83 16 36 H 0.03 1.52 8.14 -2.38 -0.02 1.50 16 37 H 0.00 0.03 8.11 -2.39 -0.02 0.01 16 38 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 39 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.04 1.34 6.42 -2.39 -0.02 1.32 16 42 H 0.06 2.19 6.63 -2.39 -0.02 2.17 16 Total: -1.00 -71.33 317.78 1.24 -70.10 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: 0.98 Total: 9.61 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: 4.62 Total: -10.63 kcal Atomic # 7 Polarization: -86.51 SS G_CDS: -6.35 Total: -92.86 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.05 Total: -23.14 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -71.33 1.24 -70.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543808069.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.890 kcal (2) G-P(sol) polarization free energy of solvation -71.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds