Wall clock time and date at job start Mon Mar 30 2020 00:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42906 * 109.47252 * 2 1 4 4 C 1.42900 * 114.00113 * 179.97438 * 3 2 1 5 5 H 1.08998 * 110.05634 * 28.58484 * 4 3 2 6 6 C 1.54267 * 110.02985 * 267.16739 * 4 3 2 7 7 C 1.54891 * 104.19324 * 217.10776 * 6 4 3 8 8 C 1.54888 * 102.75120 * 37.94011 * 7 6 4 9 9 C 1.53876 * 110.03170 * 150.00240 * 4 3 2 10 10 H 1.08994 * 110.03051 * 359.97438 * 9 4 3 11 11 N 1.46904 * 110.02916 * 238.61454 * 9 4 3 12 12 C 1.46896 * 110.99588 * 154.99710 * 11 9 4 13 13 C 1.52998 * 109.46872 * 179.97438 * 12 11 9 14 14 H 1.09000 * 109.47329 * 305.00080 * 13 12 11 15 15 C 1.47199 * 109.47355 * 65.00623 * 13 12 11 16 16 N 6.17723 * 120.90222 * 280.38135 * 2 1 3 17 17 C 1.53008 * 109.47351 * 185.00376 * 13 12 11 18 18 C 1.50694 * 109.47269 * 175.00460 * 17 13 12 19 19 H 1.07999 * 120.00144 * 359.97438 * 18 17 13 20 20 C 1.37882 * 119.99786 * 180.02562 * 18 17 13 21 21 N 1.31520 * 119.99756 * 179.97438 * 20 18 17 22 22 Si 1.86791 * 119.99970 * 359.97438 * 20 18 17 23 23 H 1.48494 * 109.47303 * 90.00473 * 22 20 18 24 24 H 1.48506 * 109.47007 * 210.00170 * 22 20 18 25 25 H 1.48498 * 109.47510 * 329.99994 * 22 20 18 26 26 H 1.09003 * 109.46907 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47473 * 300.00105 * 1 2 3 28 28 H 1.09003 * 109.46823 * 60.00361 * 1 2 3 29 29 H 1.09004 * 109.47232 * 240.00501 * 2 1 3 30 30 H 1.08998 * 109.47531 * 119.99665 * 2 1 3 31 31 H 1.09004 * 110.48597 * 335.78415 * 6 4 3 32 32 H 1.08994 * 110.48679 * 98.42942 * 6 4 3 33 33 H 1.09005 * 110.75269 * 279.62515 * 7 6 4 34 34 H 1.08999 * 110.75712 * 156.25949 * 7 6 4 35 35 H 1.09000 * 110.48622 * 203.37816 * 8 7 6 36 36 H 1.09001 * 110.59737 * 80.79460 * 8 7 6 37 37 H 1.00897 * 110.99886 * 278.95611 * 11 9 4 38 38 H 1.08998 * 109.47971 * 299.99830 * 12 11 9 39 39 H 1.09001 * 109.47249 * 60.00629 * 12 11 9 40 40 H 1.09002 * 109.46772 * 294.99894 * 17 13 12 41 41 H 1.08997 * 109.46808 * 54.99607 * 17 13 12 42 42 H 0.96994 * 119.99542 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8747 0.5933 -0.4890 6 6 3.9514 1.5735 1.4484 7 6 5.1314 2.5720 1.3507 8 6 4.6228 3.6017 0.3115 9 6 3.8578 2.7498 -0.7222 10 1 2.9784 3.2893 -1.0738 11 7 4.7343 2.4248 -1.8554 12 6 4.6820 3.4765 -2.8797 13 6 5.6060 3.1037 -4.0409 14 1 6.6102 2.9169 -3.6606 15 6 5.0981 1.8907 -4.7022 16 7 4.7024 0.9551 -5.2136 17 6 5.6481 4.2542 -5.0487 18 6 6.6507 3.9394 -6.1288 19 1 7.2029 3.0117 -6.0993 20 6 6.8637 4.8362 -7.1543 21 7 7.7391 4.5616 -8.0967 22 14 5.9091 6.4409 -7.2050 23 1 6.6606 7.4874 -6.4666 24 1 5.7280 6.8647 -8.6167 25 1 4.5799 6.2465 -6.5722 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8900 31 1 3.1735 1.9652 2.1038 32 1 4.3001 0.6045 1.8053 33 1 6.0312 2.0726 0.9912 34 1 5.3126 3.0512 2.3127 35 1 5.4615 4.1129 -0.1611 36 1 3.9539 4.3226 0.7817 37 1 5.6818 2.2678 -1.5463 38 1 3.6603 3.5768 -3.2458 39 1 5.0073 4.4223 -2.4464 40 1 4.6619 4.3828 -5.4948 41 1 5.9391 5.1729 -4.5394 42 1 7.8887 5.1923 -8.8182 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000556314796.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:42 Heat of formation + Delta-G solvation = -42.943607 kcal Electronic energy + Delta-G solvation = -20151.521164 eV Core-core repulsion = 17130.673972 eV Total energy + Delta-G solvation = -3020.847192 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.54702 -37.39524 -36.31324 -34.33198 -33.16345 -31.46595 -31.32049 -28.08602 -27.64851 -25.81384 -23.01803 -22.71580 -21.48931 -20.85875 -20.19643 -17.38790 -16.90780 -16.79990 -15.93027 -15.64231 -15.09045 -14.70217 -14.05373 -14.02097 -13.87949 -13.57439 -13.22068 -13.10746 -12.61593 -12.45440 -12.24546 -12.13531 -11.96590 -11.66391 -11.41044 -11.36982 -11.27332 -11.25601 -11.14674 -10.86527 -10.75945 -10.66428 -10.40758 -9.95884 -9.79929 -9.55986 -9.32191 -8.61865 -8.36067 -6.10785 -4.11406 3.25727 3.34967 3.36217 3.45053 3.71355 3.78759 4.19370 4.38373 4.40359 4.60056 4.77658 4.84374 4.90402 5.03294 5.18173 5.22902 5.24086 5.29957 5.35441 5.38774 5.43946 5.52113 5.59514 5.64187 5.68839 5.74231 5.76742 5.84226 5.88226 5.96880 5.99009 6.09142 6.24409 6.29773 6.91955 7.00878 7.12901 7.22896 7.43263 7.63772 8.40530 8.55764 8.92880 9.49119 11.02352 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.023619 B = 0.003995 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.193920 B = 7006.495879 C = 7452.984315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.381 6.381 4 C 0.093 3.907 5 H 0.076 0.924 6 C -0.146 4.146 7 C -0.121 4.121 8 C -0.152 4.152 9 C 0.085 3.915 10 H 0.091 0.909 11 N -0.685 5.685 12 C 0.065 3.935 13 C 0.020 3.980 14 H 0.104 0.896 15 C 0.252 3.748 16 N -0.471 5.471 17 C -0.005 4.005 18 C -0.528 4.528 19 H 0.074 0.926 20 C 0.071 3.929 21 N -0.897 5.897 22 Si 0.877 3.123 23 H -0.275 1.275 24 H -0.287 1.287 25 H -0.264 1.264 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.050 0.950 30 H 0.044 0.956 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.343 0.657 38 H 0.078 0.922 39 H 0.050 0.950 40 H 0.025 0.975 41 H 0.032 0.968 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.837 -2.969 21.710 23.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.018 4.018 3 O -0.300 6.300 4 C 0.034 3.966 5 H 0.094 0.906 6 C -0.184 4.184 7 C -0.159 4.159 8 C -0.191 4.191 9 C -0.025 4.025 10 H 0.110 0.890 11 N -0.316 5.316 12 C -0.065 4.065 13 C -0.002 4.002 14 H 0.122 0.878 15 C -0.065 4.065 16 N -0.148 5.148 17 C -0.044 4.044 18 C -0.566 4.566 19 H 0.092 0.908 20 C -0.131 4.131 21 N -0.535 5.535 22 Si 0.704 3.296 23 H -0.201 1.201 24 H -0.213 1.213 25 H -0.188 1.188 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.162 0.838 38 H 0.096 0.904 39 H 0.069 0.931 40 H 0.044 0.956 41 H 0.051 0.949 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.954 -4.563 20.434 23.183 hybrid contribution 0.499 1.680 0.398 1.797 sum -9.455 -2.883 20.833 23.059 Atomic orbital electron populations 1.21740 0.94011 1.02066 1.02995 1.22464 0.95342 0.84091 0.99949 1.87894 1.20998 1.26193 1.94950 1.22795 0.80846 0.98749 0.94162 0.90613 1.22888 0.98416 0.99650 0.97463 1.22403 0.97697 0.96585 0.99202 1.23033 1.00325 0.98111 0.97634 1.22135 0.96514 0.93956 0.89913 0.89045 1.60501 1.13776 1.45450 1.11889 1.22126 1.00751 0.92554 0.91044 1.18958 0.98432 0.88818 0.94027 0.87803 1.28752 0.92391 0.93454 0.91904 1.81047 1.10275 1.12759 1.10715 1.19635 0.98549 0.92154 0.94058 1.21030 1.22017 1.06447 1.07073 0.90785 1.24996 0.94741 0.98226 0.95174 1.69909 1.34240 1.36592 1.12783 0.86815 0.81195 0.84024 0.77524 1.20060 1.21300 1.18833 0.91312 0.92082 0.91797 0.93196 0.93783 0.90703 0.91664 0.91197 0.91421 0.90969 0.90994 0.83815 0.90381 0.93140 0.95629 0.94940 0.92567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.28 37.16 0.38 -0.92 16 2 C 0.06 0.59 6.50 37.16 0.24 0.83 16 3 O -0.38 -4.65 9.90 -35.23 -0.35 -5.00 16 4 C 0.09 1.02 3.18 -25.61 -0.08 0.94 16 5 H 0.08 0.90 7.58 -51.93 -0.39 0.50 16 6 C -0.15 -1.30 6.56 -25.07 -0.16 -1.46 16 7 C -0.12 -0.98 6.91 -24.74 -0.17 -1.15 16 8 C -0.15 -1.37 6.24 -25.08 -0.16 -1.53 16 9 C 0.09 0.95 3.04 -66.59 -0.20 0.74 16 10 H 0.09 1.13 7.62 -51.93 -0.40 0.74 16 11 N -0.69 -8.48 5.82 -105.55 -0.61 -9.09 16 12 C 0.07 0.90 4.87 -3.83 -0.02 0.88 16 13 C 0.02 0.34 2.35 -93.40 -0.22 0.12 16 14 H 0.10 1.69 8.14 -51.93 -0.42 1.26 16 15 C 0.25 5.24 13.67 -20.72 -0.28 4.96 16 16 N -0.47 -10.82 18.55 42.20 0.78 -10.04 16 17 C 0.00 -0.11 3.49 -27.88 -0.10 -0.20 16 18 C -0.53 -14.21 9.15 -34.44 -0.32 -14.52 16 19 H 0.07 2.19 7.84 -52.49 -0.41 1.78 16 20 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 21 N -0.90 -27.10 13.96 55.43 0.77 -26.33 16 22 Si 0.88 20.67 27.47 -169.99 -4.67 16.00 16 23 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.26 -5.90 6.54 56.52 0.37 -5.53 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.53 8.10 -51.93 -0.42 0.11 16 30 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.64 7.82 -51.93 -0.41 0.23 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.34 3.78 8.44 -39.29 -0.33 3.44 16 38 H 0.08 1.13 8.06 -51.93 -0.42 0.71 16 39 H 0.05 0.61 7.96 -51.93 -0.41 0.19 16 40 H 0.03 0.56 7.20 -51.93 -0.37 0.19 16 41 H 0.03 0.64 7.57 -51.93 -0.39 0.25 16 42 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 346.01 15.07 5.21 5.21 Total: -1.00 -31.52 346.01 -7.39 -38.91 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -7.35 Total: -0.25 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: -1.18 Total: -9.42 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: 0.94 Total: -45.46 kcal Atomic # 8 Polarization: -4.65 SS G_CDS: -0.35 Total: -5.00 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.67 Total: 16.00 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.52 -7.39 -38.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556314796.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.032 kcal (2) G-P(sol) polarization free energy of solvation -31.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds