Wall clock time and date at job start Mon Mar 30 2020 00:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42906 * 109.47252 * 2 1 4 4 C 1.42900 * 114.00113 * 179.97438 * 3 2 1 5 5 H 1.08998 * 110.05634 * 28.58484 * 4 3 2 6 6 C 1.54267 * 110.02985 * 267.16739 * 4 3 2 7 7 C 1.54891 * 104.19324 * 217.10776 * 6 4 3 8 8 C 1.54888 * 102.75120 * 37.94011 * 7 6 4 9 9 C 1.53876 * 110.03170 * 150.00240 * 4 3 2 10 10 H 1.08994 * 110.03051 * 359.97438 * 9 4 3 11 11 N 1.46904 * 110.02916 * 238.61454 * 9 4 3 12 12 C 1.46896 * 110.99588 * 154.99710 * 11 9 4 13 13 C 1.52998 * 109.46872 * 179.97438 * 12 11 9 14 14 H 1.09000 * 109.47329 * 305.00080 * 13 12 11 15 15 C 1.47199 * 109.47355 * 65.00623 * 13 12 11 16 16 N 6.17723 * 120.90222 * 280.38135 * 2 1 3 17 17 C 1.53008 * 109.47351 * 185.00376 * 13 12 11 18 18 C 1.50694 * 109.47269 * 175.00460 * 17 13 12 19 19 H 1.07999 * 120.00144 * 359.97438 * 18 17 13 20 20 C 1.37882 * 119.99786 * 180.02562 * 18 17 13 21 21 N 1.31520 * 119.99756 * 179.97438 * 20 18 17 22 22 Si 1.86791 * 119.99970 * 359.97438 * 20 18 17 23 23 H 1.48494 * 109.47303 * 90.00473 * 22 20 18 24 24 H 1.48506 * 109.47007 * 210.00170 * 22 20 18 25 25 H 1.48498 * 109.47510 * 329.99994 * 22 20 18 26 26 H 1.09003 * 109.46907 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47473 * 300.00105 * 1 2 3 28 28 H 1.09003 * 109.46823 * 60.00361 * 1 2 3 29 29 H 1.09004 * 109.47232 * 240.00501 * 2 1 3 30 30 H 1.08998 * 109.47531 * 119.99665 * 2 1 3 31 31 H 1.09004 * 110.48597 * 335.78415 * 6 4 3 32 32 H 1.08994 * 110.48679 * 98.42942 * 6 4 3 33 33 H 1.09005 * 110.75269 * 279.62515 * 7 6 4 34 34 H 1.08999 * 110.75712 * 156.25949 * 7 6 4 35 35 H 1.09000 * 110.48622 * 203.37816 * 8 7 6 36 36 H 1.09001 * 110.59737 * 80.79460 * 8 7 6 37 37 H 1.00897 * 110.99886 * 278.95611 * 11 9 4 38 38 H 1.08998 * 109.47971 * 299.99830 * 12 11 9 39 39 H 1.09001 * 109.47249 * 60.00629 * 12 11 9 40 40 H 1.09002 * 109.46772 * 294.99894 * 17 13 12 41 41 H 1.08997 * 109.46808 * 54.99607 * 17 13 12 42 42 H 0.96994 * 119.99542 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8747 0.5933 -0.4890 6 6 3.9514 1.5735 1.4484 7 6 5.1314 2.5720 1.3507 8 6 4.6228 3.6017 0.3115 9 6 3.8578 2.7498 -0.7222 10 1 2.9784 3.2893 -1.0738 11 7 4.7343 2.4248 -1.8554 12 6 4.6820 3.4765 -2.8797 13 6 5.6060 3.1037 -4.0409 14 1 6.6102 2.9169 -3.6606 15 6 5.0981 1.8907 -4.7022 16 7 4.7024 0.9551 -5.2136 17 6 5.6481 4.2542 -5.0487 18 6 6.6507 3.9394 -6.1288 19 1 7.2029 3.0117 -6.0993 20 6 6.8637 4.8362 -7.1543 21 7 7.7391 4.5616 -8.0967 22 14 5.9091 6.4409 -7.2050 23 1 6.6606 7.4874 -6.4666 24 1 5.7280 6.8647 -8.6167 25 1 4.5799 6.2465 -6.5722 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8900 31 1 3.1735 1.9652 2.1038 32 1 4.3001 0.6045 1.8053 33 1 6.0312 2.0726 0.9912 34 1 5.3126 3.0512 2.3127 35 1 5.4615 4.1129 -0.1611 36 1 3.9539 4.3226 0.7817 37 1 5.6818 2.2678 -1.5463 38 1 3.6603 3.5768 -3.2458 39 1 5.0073 4.4223 -2.4464 40 1 4.6619 4.3828 -5.4948 41 1 5.9391 5.1729 -4.5394 42 1 7.8887 5.1923 -8.8182 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000556314796.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:42 Heat of formation + Delta-G solvation = -63.610220 kcal Electronic energy + Delta-G solvation = -20152.417336 eV Core-core repulsion = 17130.673972 eV Total energy + Delta-G solvation = -3021.743364 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.38781 -38.64533 -37.44660 -35.80115 -34.84917 -33.06594 -32.05920 -29.39092 -28.47789 -27.06981 -24.13158 -23.62268 -23.28288 -21.57373 -21.06128 -18.93759 -18.54591 -17.89238 -16.85312 -16.51017 -16.38872 -15.92525 -15.37246 -15.13972 -14.98739 -14.77297 -14.50679 -14.28615 -13.86645 -13.81048 -13.44199 -13.34567 -13.18323 -13.01098 -12.81694 -12.37789 -12.36064 -12.22930 -12.09369 -12.00281 -11.90910 -11.66268 -11.63570 -11.49942 -11.42350 -11.24697 -10.72444 -10.44389 -9.28250 -8.24326 -6.29783 1.42471 1.46101 1.56116 2.04667 2.11927 2.41448 2.63025 3.11886 3.26538 3.36778 3.67432 3.79108 4.10307 4.15638 4.18124 4.28301 4.34169 4.41061 4.48262 4.57075 4.64573 4.68411 4.69997 4.75318 4.80146 4.88779 4.95192 5.00923 5.02410 5.06416 5.20583 5.23732 5.25074 5.27909 5.43531 5.46027 5.64238 6.06369 6.26881 6.40046 6.54898 6.77832 6.90829 7.34720 8.92642 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.023619 B = 0.003995 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.193920 B = 7006.495879 C = 7452.984315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.400 6.400 4 C 0.089 3.911 5 H 0.062 0.938 6 C -0.140 4.140 7 C -0.117 4.117 8 C -0.145 4.145 9 C 0.086 3.914 10 H 0.077 0.923 11 N -0.696 5.696 12 C 0.078 3.922 13 C 0.025 3.975 14 H 0.120 0.880 15 C 0.262 3.738 16 N -0.518 5.518 17 C -0.003 4.003 18 C -0.531 4.531 19 H 0.030 0.970 20 C 0.003 3.997 21 N -0.954 5.954 22 Si 0.948 3.052 23 H -0.255 1.255 24 H -0.296 1.296 25 H -0.240 1.240 26 H 0.086 0.914 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.037 0.963 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.352 0.648 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.024 0.976 41 H 0.064 0.936 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.705 -1.285 24.273 26.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.023 4.023 3 O -0.320 6.320 4 C 0.030 3.970 5 H 0.080 0.920 6 C -0.178 4.178 7 C -0.154 4.154 8 C -0.184 4.184 9 C -0.024 4.024 10 H 0.096 0.904 11 N -0.329 5.329 12 C -0.052 4.052 13 C 0.003 3.997 14 H 0.137 0.863 15 C -0.054 4.054 16 N -0.195 5.195 17 C -0.042 4.042 18 C -0.569 4.569 19 H 0.048 0.952 20 C -0.194 4.194 21 N -0.595 5.595 22 Si 0.771 3.229 23 H -0.180 1.180 24 H -0.222 1.222 25 H -0.163 1.163 26 H 0.105 0.895 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.172 0.828 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.042 0.958 41 H 0.082 0.918 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.828 -2.889 23.038 25.619 hybrid contribution 0.806 1.033 -0.406 1.372 sum -10.022 -1.856 22.632 24.821 Atomic orbital electron populations 1.21750 0.92949 1.03190 1.02623 1.22594 0.96282 0.83401 1.00045 1.87868 1.21691 1.27307 1.95117 1.22878 0.80413 0.98159 0.95514 0.91989 1.22831 0.98669 1.00457 0.95805 1.22408 0.97308 0.96078 0.99648 1.22979 1.00295 0.98011 0.97159 1.22124 0.96010 0.94295 0.89950 0.90449 1.60405 1.14672 1.45353 1.12449 1.21949 0.99279 0.94006 0.89953 1.19083 1.00274 0.86043 0.94255 0.86266 1.29526 0.91225 0.93643 0.91006 1.81042 1.12082 1.14334 1.12088 1.19585 0.96489 0.94696 0.93434 1.21403 1.22281 1.04521 1.08655 0.95207 1.26038 0.95883 1.02720 0.94737 1.70091 1.36855 1.38447 1.14094 0.85688 0.80725 0.79061 0.77403 1.17959 1.22249 1.16279 0.89486 0.91569 0.92975 0.94425 0.92326 0.90803 0.90877 0.90779 0.90034 0.90227 0.90529 0.82810 0.91085 0.90199 0.95760 0.91771 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 10.28 71.98 0.74 -1.67 16 2 C 0.05 1.04 6.50 71.98 0.47 1.51 16 3 O -0.40 -9.46 9.90 -148.98 -1.47 -10.94 16 4 C 0.09 1.84 3.18 31.32 0.10 1.94 16 5 H 0.06 1.44 7.58 -2.39 -0.02 1.42 16 6 C -0.14 -2.18 6.56 31.67 0.21 -1.97 16 7 C -0.12 -1.54 6.91 31.89 0.22 -1.32 16 8 C -0.15 -2.18 6.24 31.67 0.20 -1.98 16 9 C 0.09 1.75 3.04 45.64 0.14 1.89 16 10 H 0.08 1.80 7.62 -2.39 -0.02 1.78 16 11 N -0.70 -15.85 5.82 -487.85 -2.84 -18.69 16 12 C 0.08 1.93 4.87 86.30 0.42 2.35 16 13 C 0.03 0.84 2.35 -12.60 -0.03 0.81 16 14 H 0.12 3.63 8.14 -2.39 -0.02 3.62 16 15 C 0.26 10.86 13.67 89.43 1.22 12.08 16 16 N -0.52 -24.16 18.55 20.02 0.37 -23.79 16 17 C 0.00 -0.12 3.49 29.85 0.10 -0.02 16 18 C -0.53 -28.64 9.15 25.60 0.23 -28.41 16 19 H 0.03 1.82 7.84 -2.91 -0.02 1.79 16 20 C 0.00 0.16 5.47 84.65 0.46 0.62 16 21 N -0.95 -59.16 13.96 21.45 0.30 -58.86 16 22 Si 0.95 41.59 27.47 68.60 1.88 43.47 16 23 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 24 H -0.30 -13.34 7.11 99.48 0.71 -12.63 16 25 H -0.24 -9.50 6.54 99.48 0.65 -8.85 16 26 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.04 0.81 8.10 -2.38 -0.02 0.79 16 30 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.07 1.18 8.08 -2.38 -0.02 1.16 16 32 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.08 1.10 7.82 -2.39 -0.02 1.08 16 36 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.35 6.90 8.44 -89.70 -0.76 6.14 16 38 H 0.07 1.89 8.06 -2.39 -0.02 1.87 16 39 H 0.08 1.56 7.96 -2.39 -0.02 1.54 16 40 H 0.02 1.00 7.20 -2.39 -0.02 0.98 16 41 H 0.06 2.25 7.57 -2.39 -0.02 2.23 16 42 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -70.20 346.01 2.90 -67.30 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 0.17 Total: 15.67 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: 4.49 Total: -14.16 kcal Atomic # 7 Polarization: -99.17 SS G_CDS: -2.17 Total: -101.34 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: -1.47 Total: -10.94 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 1.88 Total: 43.47 kcal Total: -70.20 2.90 -67.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556314796.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.686 kcal (2) G-P(sol) polarization free energy of solvation -70.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds