Wall clock time and date at job start Mon Mar 30 2020 00:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42904 * 109.47283 * 2 1 4 4 C 1.42892 * 114.00009 * 180.02562 * 3 2 1 5 5 H 1.09003 * 110.05806 * 28.58821 * 4 3 2 6 6 C 1.54261 * 110.03528 * 267.17012 * 4 3 2 7 7 C 1.54885 * 104.19729 * 264.32481 * 6 4 3 8 8 C 1.54971 * 102.77744 * 322.08471 * 7 6 4 9 9 C 1.53878 * 110.03318 * 149.99952 * 4 3 2 10 10 H 1.08997 * 110.02684 * 359.95575 * 9 4 3 11 11 N 1.46890 * 110.03597 * 238.57319 * 9 4 3 12 12 C 1.46903 * 111.00241 * 155.69034 * 11 9 4 13 13 C 1.52997 * 109.47311 * 180.02562 * 12 11 9 14 14 H 1.09001 * 109.47375 * 55.00046 * 13 12 11 15 15 C 1.47206 * 109.47080 * 295.00010 * 13 12 11 16 16 N 7.90740 * 146.02006 * 313.66567 * 2 1 3 17 17 C 1.52997 * 109.47232 * 174.99912 * 13 12 11 18 18 C 1.50699 * 109.47337 * 184.99945 * 17 13 12 19 19 H 1.08001 * 119.99707 * 359.97438 * 18 17 13 20 20 C 1.37875 * 120.00057 * 180.02562 * 18 17 13 21 21 N 1.31519 * 120.00040 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99913 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47508 * 89.99784 * 22 20 18 24 24 H 1.48511 * 109.46854 * 209.99826 * 22 20 18 25 25 H 1.48500 * 109.47166 * 329.98995 * 22 20 18 26 26 H 1.09002 * 109.46537 * 299.99523 * 1 2 3 27 27 H 1.08991 * 109.47341 * 59.99524 * 1 2 3 28 28 H 1.08997 * 109.47163 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46537 * 240.00476 * 2 1 3 30 30 H 1.08999 * 109.47025 * 120.00356 * 2 1 3 31 31 H 1.08995 * 110.48577 * 23.00573 * 6 4 3 32 32 H 1.09004 * 110.48909 * 145.51399 * 6 4 3 33 33 H 1.08998 * 110.75566 * 80.36990 * 7 6 4 34 34 H 1.09001 * 110.75962 * 203.74247 * 7 6 4 35 35 H 1.09003 * 110.47235 * 279.23017 * 8 7 6 36 36 H 1.08997 * 110.53078 * 156.56428 * 8 7 6 37 37 H 1.00905 * 111.00478 * 31.73659 * 11 9 4 38 38 H 1.08994 * 109.46766 * 59.99709 * 12 11 9 39 39 H 1.09000 * 109.47050 * 299.99781 * 12 11 9 40 40 H 1.09004 * 109.47346 * 305.00019 * 17 13 12 41 41 H 1.09002 * 109.47196 * 64.99793 * 17 13 12 42 42 H 0.97001 * 119.99777 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8743 0.5934 -0.4909 6 6 3.9527 1.5729 1.4467 7 6 4.1026 3.0969 1.6787 8 6 4.6228 3.6026 0.3093 9 6 3.8572 2.7499 -0.7234 10 1 2.9776 3.2893 -1.0744 11 7 4.7335 2.4254 -1.8568 12 6 4.6933 3.4850 -2.8736 13 6 5.6158 3.1119 -4.0357 14 1 5.3377 2.1304 -4.4197 15 6 7.0098 3.0774 -3.5642 16 7 8.0871 3.0514 -3.1970 17 6 5.4796 4.1523 -5.1492 18 6 6.2935 3.7210 -6.3420 19 1 6.8523 2.7974 -6.3090 20 6 6.3255 4.5060 -7.4750 21 7 5.6454 5.6310 -7.5150 22 14 7.3337 3.9710 -8.9538 23 1 6.4918 3.1419 -9.8532 24 1 7.8101 5.1707 -9.6882 25 1 8.5009 3.1755 -8.4955 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.2319 1.1496 2.1462 32 1 4.9166 1.0734 1.5448 33 1 3.1391 3.5482 1.9157 34 1 4.8288 3.2982 2.4663 35 1 5.6962 3.4335 0.2232 36 1 4.3905 4.6595 0.1787 37 1 4.4915 1.5312 -2.2567 38 1 5.0258 4.4246 -2.4324 39 1 3.6734 3.5971 -3.2413 40 1 4.4321 4.2414 -5.4372 41 1 5.8415 5.1164 -4.7919 42 1 5.6676 6.1831 -8.3123 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000556314797.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:46 Heat of formation + Delta-G solvation = -46.208853 kcal Electronic energy + Delta-G solvation = -20060.382567 eV Core-core repulsion = 17039.393783 eV Total energy + Delta-G solvation = -3020.988784 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.52462 -37.26670 -36.16859 -34.33580 -33.24161 -31.36560 -31.27959 -27.91856 -27.54873 -25.49128 -23.11054 -22.68103 -21.77416 -20.76942 -20.02965 -17.33536 -16.88263 -16.36080 -15.96382 -15.57847 -15.14962 -14.63443 -14.57248 -14.02807 -13.66055 -13.52791 -12.99261 -12.92313 -12.65870 -12.31633 -12.08705 -11.92667 -11.76373 -11.60261 -11.42775 -11.29798 -11.15768 -11.11636 -11.03284 -10.70758 -10.66828 -10.64654 -10.49540 -10.23234 -9.72036 -9.49970 -9.21242 -8.45712 -8.32209 -6.09168 -4.12369 3.29327 3.36301 3.38649 3.41503 3.74542 3.83481 4.30396 4.40458 4.43976 4.56948 4.81834 4.86730 4.92247 4.97909 5.13310 5.21083 5.28925 5.32481 5.40763 5.46383 5.57717 5.61051 5.64492 5.69222 5.74144 5.80244 5.87145 5.91396 5.96306 6.04297 6.10330 6.33710 6.42334 6.50824 7.00959 7.19581 7.42767 7.48226 7.54137 7.86045 8.23545 8.59809 8.92410 9.53092 11.01736 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.024112 B = 0.003734 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.982328 B = 7496.192473 C = 8073.385276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.381 6.381 4 C 0.083 3.917 5 H 0.069 0.931 6 C -0.140 4.140 7 C -0.120 4.120 8 C -0.113 4.113 9 C 0.086 3.914 10 H 0.063 0.937 11 N -0.686 5.686 12 C 0.067 3.933 13 C 0.010 3.990 14 H 0.098 0.902 15 C 0.255 3.745 16 N -0.480 5.480 17 C 0.031 3.969 18 C -0.526 4.526 19 H 0.057 0.943 20 C 0.062 3.938 21 N -0.892 5.892 22 Si 0.891 3.109 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.274 1.274 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.048 0.952 30 H 0.046 0.954 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.339 0.661 38 H 0.078 0.922 39 H 0.051 0.949 40 H 0.037 0.963 41 H 0.026 0.974 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.457 -9.142 16.603 21.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.301 6.301 4 C 0.025 3.975 5 H 0.087 0.913 6 C -0.178 4.178 7 C -0.157 4.157 8 C -0.152 4.152 9 C -0.024 4.024 10 H 0.081 0.919 11 N -0.318 5.318 12 C -0.063 4.063 13 C -0.012 4.012 14 H 0.116 0.884 15 C -0.061 4.061 16 N -0.157 5.157 17 C -0.007 4.007 18 C -0.564 4.564 19 H 0.075 0.925 20 C -0.140 4.140 21 N -0.530 5.530 22 Si 0.719 3.281 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.198 1.198 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.158 0.842 38 H 0.096 0.904 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.045 0.955 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.435 -8.628 17.338 21.124 hybrid contribution -0.569 -0.614 -1.510 1.726 sum -9.004 -9.242 15.829 20.421 Atomic orbital electron populations 1.21741 0.93840 1.02121 1.03142 1.22496 0.95517 0.84080 0.99957 1.87948 1.20934 1.26173 1.94996 1.22915 0.80754 0.98027 0.95850 0.91333 1.22772 1.01143 0.97643 0.96274 1.22440 1.01000 0.94935 0.97370 1.22421 1.01033 0.98697 0.93002 1.22194 0.94095 0.94390 0.91755 0.91919 1.60755 1.55309 1.05694 1.09996 1.22125 0.98311 0.95047 0.90816 1.19218 0.82405 1.03994 0.95605 0.88383 1.28959 0.94651 0.91683 0.90849 1.81083 1.12652 1.10295 1.11650 1.19169 0.98628 0.92582 0.90348 1.21144 1.29428 1.07268 0.98604 0.92505 1.24955 0.95479 0.94812 0.98729 1.69942 1.41386 1.12707 1.28987 0.86593 0.80609 0.78208 0.82685 1.20487 1.21143 1.19841 0.91980 0.91745 0.91253 0.93346 0.93606 0.91351 0.90778 0.91430 0.91602 0.90161 0.91598 0.84236 0.90402 0.93116 0.94445 0.95523 0.92798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.28 37.16 0.38 -0.74 16 2 C 0.06 0.49 6.50 37.16 0.24 0.73 16 3 O -0.38 -4.28 9.89 -35.23 -0.35 -4.62 16 4 C 0.08 0.88 3.06 -25.61 -0.08 0.80 16 5 H 0.07 0.70 7.14 -51.93 -0.37 0.33 16 6 C -0.14 -1.35 6.57 -25.08 -0.16 -1.52 16 7 C -0.12 -1.18 6.91 -24.70 -0.17 -1.35 16 8 C -0.11 -1.32 6.47 -25.03 -0.16 -1.48 16 9 C 0.09 1.02 3.05 -66.60 -0.20 0.82 16 10 H 0.06 0.81 7.63 -51.93 -0.40 0.41 16 11 N -0.69 -9.04 5.96 -105.55 -0.63 -9.67 16 12 C 0.07 1.00 4.87 -3.82 -0.02 0.98 16 13 C 0.01 0.18 2.35 -93.41 -0.22 -0.04 16 14 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 15 C 0.26 5.35 13.68 -20.68 -0.28 5.07 16 16 N -0.48 -10.95 18.55 42.25 0.78 -10.17 16 17 C 0.03 0.73 4.42 -27.89 -0.12 0.61 16 18 C -0.53 -14.06 8.60 -34.44 -0.30 -14.35 16 19 H 0.06 1.51 7.59 -52.49 -0.40 1.11 16 20 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 21 N -0.89 -25.62 13.29 55.43 0.74 -24.89 16 22 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.40 8.10 -51.93 -0.42 -0.02 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.62 8.07 -51.93 -0.42 0.20 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 1.05 8.05 -51.93 -0.42 0.63 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.34 4.06 8.03 -39.29 -0.32 3.75 16 38 H 0.08 1.22 8.12 -51.93 -0.42 0.80 16 39 H 0.05 0.72 8.07 -51.93 -0.42 0.30 16 40 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 349.45 15.07 5.27 5.27 Total: -1.00 -30.22 349.45 -7.77 -38.00 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -7.36 Total: -1.40 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -1.19 Total: -8.85 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: 0.89 Total: -44.73 kcal Atomic # 8 Polarization: -4.28 SS G_CDS: -0.35 Total: -4.62 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.22 -7.77 -38.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556314797.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.214 kcal (2) G-P(sol) polarization free energy of solvation -30.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds