Wall clock time and date at job start Mon Mar 30 2020 00:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42904 * 109.47283 * 2 1 4 4 C 1.42892 * 114.00009 * 180.02562 * 3 2 1 5 5 H 1.09003 * 110.05806 * 28.58821 * 4 3 2 6 6 C 1.54261 * 110.03528 * 267.17012 * 4 3 2 7 7 C 1.54885 * 104.19729 * 264.32481 * 6 4 3 8 8 C 1.54971 * 102.77744 * 322.08471 * 7 6 4 9 9 C 1.53878 * 110.03318 * 149.99952 * 4 3 2 10 10 H 1.08997 * 110.02684 * 359.95575 * 9 4 3 11 11 N 1.46890 * 110.03597 * 238.57319 * 9 4 3 12 12 C 1.46903 * 111.00241 * 155.69034 * 11 9 4 13 13 C 1.52997 * 109.47311 * 180.02562 * 12 11 9 14 14 H 1.09001 * 109.47375 * 55.00046 * 13 12 11 15 15 C 1.47206 * 109.47080 * 295.00010 * 13 12 11 16 16 N 7.90740 * 146.02006 * 313.66567 * 2 1 3 17 17 C 1.52997 * 109.47232 * 174.99912 * 13 12 11 18 18 C 1.50699 * 109.47337 * 184.99945 * 17 13 12 19 19 H 1.08001 * 119.99707 * 359.97438 * 18 17 13 20 20 C 1.37875 * 120.00057 * 180.02562 * 18 17 13 21 21 N 1.31519 * 120.00040 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99913 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47508 * 89.99784 * 22 20 18 24 24 H 1.48511 * 109.46854 * 209.99826 * 22 20 18 25 25 H 1.48500 * 109.47166 * 329.98995 * 22 20 18 26 26 H 1.09002 * 109.46537 * 299.99523 * 1 2 3 27 27 H 1.08991 * 109.47341 * 59.99524 * 1 2 3 28 28 H 1.08997 * 109.47163 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46537 * 240.00476 * 2 1 3 30 30 H 1.08999 * 109.47025 * 120.00356 * 2 1 3 31 31 H 1.08995 * 110.48577 * 23.00573 * 6 4 3 32 32 H 1.09004 * 110.48909 * 145.51399 * 6 4 3 33 33 H 1.08998 * 110.75566 * 80.36990 * 7 6 4 34 34 H 1.09001 * 110.75962 * 203.74247 * 7 6 4 35 35 H 1.09003 * 110.47235 * 279.23017 * 8 7 6 36 36 H 1.08997 * 110.53078 * 156.56428 * 8 7 6 37 37 H 1.00905 * 111.00478 * 31.73659 * 11 9 4 38 38 H 1.08994 * 109.46766 * 59.99709 * 12 11 9 39 39 H 1.09000 * 109.47050 * 299.99781 * 12 11 9 40 40 H 1.09004 * 109.47346 * 305.00019 * 17 13 12 41 41 H 1.09002 * 109.47196 * 64.99793 * 17 13 12 42 42 H 0.97001 * 119.99777 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8743 0.5934 -0.4909 6 6 3.9527 1.5729 1.4467 7 6 4.1026 3.0969 1.6787 8 6 4.6228 3.6026 0.3093 9 6 3.8572 2.7499 -0.7234 10 1 2.9776 3.2893 -1.0744 11 7 4.7335 2.4254 -1.8568 12 6 4.6933 3.4850 -2.8736 13 6 5.6158 3.1119 -4.0357 14 1 5.3377 2.1304 -4.4197 15 6 7.0098 3.0774 -3.5642 16 7 8.0871 3.0514 -3.1970 17 6 5.4796 4.1523 -5.1492 18 6 6.2935 3.7210 -6.3420 19 1 6.8523 2.7974 -6.3090 20 6 6.3255 4.5060 -7.4750 21 7 5.6454 5.6310 -7.5150 22 14 7.3337 3.9710 -8.9538 23 1 6.4918 3.1419 -9.8532 24 1 7.8101 5.1707 -9.6882 25 1 8.5009 3.1755 -8.4955 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.2319 1.1496 2.1462 32 1 4.9166 1.0734 1.5448 33 1 3.1391 3.5482 1.9157 34 1 4.8288 3.2982 2.4663 35 1 5.6962 3.4335 0.2232 36 1 4.3905 4.6595 0.1787 37 1 4.4915 1.5312 -2.2567 38 1 5.0258 4.4246 -2.4324 39 1 3.6734 3.5971 -3.2413 40 1 4.4321 4.2414 -5.4372 41 1 5.8415 5.1164 -4.7919 42 1 5.6676 6.1831 -8.3123 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000556314797.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:45 Heat of formation + Delta-G solvation = -64.346424 kcal Electronic energy + Delta-G solvation = -20061.169071 eV Core-core repulsion = 17039.393783 eV Total energy + Delta-G solvation = -3021.775288 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.39714 -38.59244 -37.28493 -35.81972 -34.98490 -32.92167 -31.99907 -29.07443 -28.67983 -26.91222 -24.22526 -23.68400 -23.49716 -21.58443 -20.97231 -18.68930 -18.33918 -17.88464 -16.86985 -16.59599 -16.36493 -16.01596 -15.66697 -15.37767 -14.87897 -14.57542 -14.37222 -14.17360 -13.71465 -13.59340 -13.48552 -13.26427 -13.07330 -12.95408 -12.80333 -12.50534 -12.47568 -12.20890 -12.15641 -12.01385 -11.96692 -11.85604 -11.60843 -11.47821 -11.38093 -11.12664 -10.55070 -10.42612 -9.39544 -8.19476 -6.27967 1.40368 1.42411 1.51696 2.05704 2.12637 2.41395 2.60706 3.15742 3.26909 3.38762 3.57402 3.72952 4.06250 4.18402 4.21782 4.31254 4.35145 4.41735 4.53088 4.53643 4.57517 4.70767 4.75594 4.79921 4.85461 4.86090 5.00824 5.03451 5.06902 5.09642 5.17230 5.23095 5.30959 5.46358 5.46420 5.61302 5.78905 5.99997 6.20384 6.32753 6.51740 6.83168 6.93480 7.40787 8.91534 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.024112 B = 0.003734 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.982328 B = 7496.192473 C = 8073.385276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.049 3.951 3 O -0.399 6.399 4 C 0.085 3.915 5 H 0.074 0.926 6 C -0.137 4.137 7 C -0.115 4.115 8 C -0.115 4.115 9 C 0.086 3.914 10 H 0.055 0.945 11 N -0.688 5.688 12 C 0.080 3.920 13 C 0.021 3.979 14 H 0.121 0.879 15 C 0.266 3.734 16 N -0.513 5.513 17 C 0.037 3.963 18 C -0.539 4.539 19 H 0.055 0.945 20 C 0.011 3.989 21 N -0.924 5.924 22 Si 0.950 3.050 23 H -0.266 1.266 24 H -0.285 1.285 25 H -0.275 1.275 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.088 0.912 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.348 0.652 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.034 0.966 41 H 0.000 1.000 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.058 -10.623 17.120 22.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.318 6.318 4 C 0.027 3.973 5 H 0.092 0.908 6 C -0.175 4.175 7 C -0.153 4.153 8 C -0.153 4.153 9 C -0.023 4.023 10 H 0.073 0.927 11 N -0.321 5.321 12 C -0.050 4.050 13 C 0.000 4.000 14 H 0.138 0.862 15 C -0.050 4.050 16 N -0.191 5.191 17 C -0.002 4.002 18 C -0.577 4.577 19 H 0.073 0.927 20 C -0.188 4.188 21 N -0.564 5.564 22 Si 0.775 3.225 23 H -0.191 1.191 24 H -0.211 1.211 25 H -0.200 1.200 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.107 0.893 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.168 0.832 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.053 0.947 41 H 0.018 0.982 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.044 -10.129 17.863 22.438 hybrid contribution -0.406 -0.153 -1.650 1.706 sum -9.450 -10.282 16.213 21.398 Atomic orbital electron populations 1.21756 0.93089 1.03226 1.02580 1.22688 0.96182 0.83098 1.00726 1.87927 1.21007 1.27789 1.95122 1.22860 0.80862 0.97291 0.96303 0.90765 1.22760 1.01540 0.97400 0.95762 1.22419 1.01231 0.95117 0.96504 1.22401 1.00000 0.98677 0.94213 1.22199 0.93507 0.95303 0.91334 0.92740 1.60690 1.56048 1.05550 1.09781 1.21901 0.97861 0.95222 0.90065 1.19162 0.81796 1.03586 0.95490 0.86159 1.29420 0.94944 0.90674 0.89990 1.81083 1.13688 1.11426 1.12901 1.18991 0.97624 0.92648 0.90896 1.21554 1.29365 1.07057 0.99739 0.92669 1.25729 0.96605 0.94970 1.01510 1.70040 1.42826 1.13735 1.29803 0.85674 0.79169 0.77842 0.79765 1.19095 1.21059 1.20035 0.92184 0.92638 0.89342 0.92901 0.92476 0.90467 0.90350 0.91268 0.90596 0.91743 0.91859 0.83244 0.91279 0.91831 0.94740 0.98152 0.92716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 10.28 71.98 0.74 -1.22 16 2 C 0.05 0.76 6.50 71.98 0.47 1.23 16 3 O -0.40 -8.27 9.89 -148.98 -1.47 -9.74 16 4 C 0.08 1.66 3.06 31.32 0.10 1.76 16 5 H 0.07 1.36 7.14 -2.39 -0.02 1.34 16 6 C -0.14 -2.36 6.57 31.67 0.21 -2.15 16 7 C -0.11 -2.09 6.91 31.91 0.22 -1.87 16 8 C -0.11 -2.57 6.47 31.70 0.20 -2.37 16 9 C 0.09 1.96 3.05 45.64 0.14 2.10 16 10 H 0.05 1.35 7.63 -2.39 -0.02 1.33 16 11 N -0.69 -17.19 5.96 -487.86 -2.91 -20.10 16 12 C 0.08 2.31 4.87 86.30 0.42 2.73 16 13 C 0.02 0.77 2.35 -12.60 -0.03 0.74 16 14 H 0.12 3.82 8.14 -2.39 -0.02 3.80 16 15 C 0.27 10.99 13.68 89.42 1.22 12.21 16 16 N -0.51 -23.28 18.55 20.04 0.37 -22.91 16 17 C 0.04 1.73 4.42 29.85 0.13 1.86 16 18 C -0.54 -28.63 8.60 25.60 0.22 -28.41 16 19 H 0.06 2.89 7.59 -2.91 -0.02 2.87 16 20 C 0.01 0.59 5.46 84.65 0.46 1.05 16 21 N -0.92 -53.36 13.29 21.45 0.28 -53.07 16 22 Si 0.95 43.52 29.54 68.60 2.03 45.54 16 23 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 24 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 25 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 26 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.05 0.76 8.10 -2.39 -0.02 0.74 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.08 1.21 8.07 -2.39 -0.02 1.19 16 32 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.06 1.66 8.05 -2.39 -0.02 1.64 16 36 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.35 7.64 8.03 -89.69 -0.72 6.92 16 38 H 0.07 2.14 8.12 -2.39 -0.02 2.12 16 39 H 0.06 1.70 8.07 -2.39 -0.02 1.68 16 40 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 42 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -63.53 349.45 3.07 -60.46 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 0.26 Total: 12.17 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: 4.50 Total: -12.35 kcal Atomic # 7 Polarization: -93.83 SS G_CDS: -2.25 Total: -96.08 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: -1.47 Total: -9.74 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -63.53 3.07 -60.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556314797.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.887 kcal (2) G-P(sol) polarization free energy of solvation -63.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds