Wall clock time and date at job start Mon Mar 30 2020 00:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46904 * 109.47348 * 2 1 4 4 C 1.46906 * 110.99601 * 71.05106 * 3 2 1 5 5 C 1.52998 * 109.46535 * 197.32215 * 4 3 2 6 6 C 1.46893 * 111.00298 * 195.00951 * 3 2 1 7 7 H 1.09001 * 109.47061 * 185.54024 * 6 3 2 8 8 C 1.52999 * 109.47335 * 65.53654 * 6 3 2 9 9 N 1.46899 * 109.47073 * 54.82287 * 8 6 3 10 10 C 1.46894 * 111.00326 * 175.95503 * 9 8 6 11 11 C 1.50702 * 109.47410 * 179.97438 * 10 9 8 12 12 H 1.07995 * 119.99806 * 0.02562 * 11 10 9 13 13 C 1.37881 * 120.00069 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99750 * 180.02562 * 13 11 10 15 15 Si 1.86795 * 120.00019 * 0.02562 * 13 11 10 16 16 H 1.48507 * 109.47136 * 89.99784 * 15 13 11 17 17 H 1.48502 * 109.47301 * 209.99784 * 15 13 11 18 18 H 1.48499 * 109.47251 * 330.00355 * 15 13 11 19 19 C 1.50709 * 109.47107 * 305.54059 * 6 3 2 20 20 C 1.34512 * 125.78687 * 228.49624 * 19 6 3 21 21 C 1.41385 * 106.83945 * 179.88913 * 20 19 6 22 22 C 1.34518 * 106.84009 * 0.36504 * 21 20 19 23 23 O 1.34301 * 125.79076 * 48.79392 * 19 6 3 24 24 H 1.09005 * 109.46907 * 179.97438 * 1 2 3 25 25 H 1.08990 * 109.47177 * 299.99908 * 1 2 3 26 26 H 1.09003 * 109.47190 * 60.00415 * 1 2 3 27 27 H 1.09004 * 109.47103 * 240.00230 * 2 1 3 28 28 H 1.09003 * 109.47161 * 120.00141 * 2 1 3 29 29 H 1.08991 * 109.47300 * 317.32220 * 4 3 2 30 30 H 1.08994 * 109.46422 * 77.32475 * 4 3 2 31 31 H 1.08994 * 109.47570 * 303.87069 * 5 4 3 32 32 H 1.09001 * 109.47439 * 63.88064 * 5 4 3 33 33 H 1.09005 * 109.46606 * 183.87669 * 5 4 3 34 34 H 1.09006 * 109.47222 * 294.82022 * 8 6 3 35 35 H 1.09001 * 109.47074 * 174.81857 * 8 6 3 36 36 H 1.00896 * 111.00192 * 51.99691 * 9 8 6 37 37 H 1.08998 * 109.46939 * 299.99850 * 10 9 8 38 38 H 1.09003 * 109.47069 * 59.99832 * 10 9 8 39 39 H 0.97000 * 119.99910 * 180.02562 * 14 13 11 40 40 H 1.08001 * 126.58414 * 0.02562 * 20 19 6 41 41 H 1.08000 * 126.58167 * 180.16175 * 21 20 19 42 42 H 1.07994 * 125.78831 * 179.75469 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7753 2.0297 1.2972 5 6 1.8872 3.5476 1.1412 6 6 3.4440 1.4398 -0.3551 7 1 3.8050 2.4631 -0.2522 8 6 3.6271 0.9775 -1.8021 9 7 2.7687 1.7790 -2.6845 10 6 2.9888 1.4281 -4.0938 11 6 2.0926 2.2684 -4.9667 12 1 1.4265 2.9911 -4.5192 13 6 2.1238 2.1151 -6.3366 14 7 1.3421 2.8488 -7.0983 15 14 3.2765 0.8655 -7.1106 16 1 2.5818 -0.4417 -7.2293 17 1 3.6818 1.3350 -8.4599 18 1 4.4822 0.7095 -6.2579 19 6 4.2260 0.5365 0.5635 20 6 5.3510 0.8678 1.2222 21 6 5.7417 -0.2707 1.9639 22 6 4.8366 -1.2322 1.7077 23 8 3.9208 -0.7376 0.8588 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 0.7758 1.7732 1.6478 30 1 2.5140 1.6833 2.0199 31 1 2.8628 3.7993 0.7256 32 1 1.1042 3.9028 0.4713 33 1 1.7742 4.0223 2.1160 34 1 3.3523 -0.0741 -1.8851 35 1 4.6692 1.1050 -2.0952 36 1 2.9132 2.7657 -2.5308 37 1 4.0303 1.6141 -4.3562 38 1 2.7585 0.3736 -4.2459 39 1 1.3638 2.7407 -8.0620 40 1 5.8573 1.8213 1.1922 41 1 6.6035 -0.3536 2.6095 42 1 4.8451 -2.2323 2.1151 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573914316.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:11 Heat of formation + Delta-G solvation = 26.174835 kcal Electronic energy + Delta-G solvation = -21097.675127 eV Core-core repulsion = 18079.825135 eV Total energy + Delta-G solvation = -3017.849992 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.68102 -38.41664 -35.17031 -33.17592 -32.53442 -31.61725 -31.30664 -28.54340 -27.78962 -25.47937 -23.02155 -22.35332 -21.68269 -21.31986 -20.78528 -19.66971 -17.14580 -16.83237 -16.19039 -15.83339 -15.38594 -14.99970 -14.30988 -14.08721 -13.96916 -13.74185 -13.27935 -12.86460 -12.78974 -12.72444 -12.40061 -12.23328 -12.07786 -11.89714 -11.61516 -11.46464 -11.24488 -11.15758 -10.64238 -10.54090 -10.43603 -10.29486 -9.93604 -9.79653 -9.23028 -8.53585 -8.50684 -8.10540 -7.30081 -6.00464 -3.97405 1.69552 2.56571 2.96254 3.32195 3.39140 3.41835 4.03500 4.46561 4.53899 4.90342 4.97672 5.07913 5.13824 5.31928 5.33467 5.34163 5.45502 5.53192 5.62779 5.69834 5.74276 5.78735 5.83497 5.84039 5.89857 6.05469 6.13366 6.15011 6.18438 6.35928 6.40611 6.44453 6.58361 6.83235 7.05071 7.08071 7.27624 7.34606 7.67817 7.97382 8.45020 8.72334 9.09692 9.62144 11.12966 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019762 B = 0.005206 C = 0.004702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.503473 B = 5376.699514 C = 5953.190876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.052 3.948 3 N -0.498 5.498 4 C 0.045 3.955 5 C -0.145 4.145 6 C 0.165 3.835 7 H 0.108 0.892 8 C 0.066 3.934 9 N -0.657 5.657 10 C 0.164 3.836 11 C -0.510 4.510 12 H 0.081 0.919 13 C 0.068 3.932 14 N -0.902 5.902 15 Si 0.876 3.124 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.269 1.269 19 C -0.027 4.027 20 C -0.213 4.213 21 C -0.214 4.214 22 C -0.054 4.054 23 O -0.165 6.165 24 H 0.051 0.949 25 H 0.046 0.954 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.036 0.964 29 H 0.074 0.926 30 H 0.028 0.972 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.051 0.949 34 H 0.068 0.932 35 H 0.025 0.975 36 H 0.336 0.664 37 H -0.019 1.019 38 H 0.020 0.980 39 H 0.263 0.737 40 H 0.145 0.855 41 H 0.144 0.856 42 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.771 -5.593 20.186 21.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.075 4.075 3 N -0.220 5.220 4 C -0.083 4.083 5 C -0.203 4.203 6 C 0.055 3.945 7 H 0.126 0.874 8 C -0.064 4.064 9 N -0.287 5.287 10 C 0.036 3.964 11 C -0.548 4.548 12 H 0.099 0.901 13 C -0.133 4.133 14 N -0.541 5.541 15 Si 0.703 3.297 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.194 1.194 19 C -0.080 4.080 20 C -0.233 4.233 21 C -0.233 4.233 22 C -0.122 4.122 23 O -0.060 6.060 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.090 0.910 27 H 0.098 0.902 28 H 0.054 0.946 29 H 0.093 0.907 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.043 0.957 36 H 0.153 0.847 37 H -0.002 1.002 38 H 0.038 0.962 39 H 0.072 0.928 40 H 0.162 0.838 41 H 0.162 0.838 42 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 4.624 -5.866 19.565 20.942 hybrid contribution 2.303 -0.753 0.114 2.426 sum 6.927 -6.619 19.678 21.887 Atomic orbital electron populations 1.21762 0.95005 1.00917 1.02511 1.22184 0.95861 0.88268 1.01167 1.62098 1.13564 1.17560 1.28800 1.22163 1.00839 0.95355 0.89924 1.21763 1.02615 0.94763 1.01157 1.20741 0.86066 0.95480 0.92223 0.87424 1.21990 0.94924 0.99403 0.90098 1.60339 1.54527 1.08493 1.05356 1.20011 0.94563 0.96862 0.84968 1.21058 1.22101 1.21223 0.90410 0.90138 1.24894 0.95480 0.95793 0.97180 1.69900 1.39022 1.40419 1.04757 0.86855 0.81935 0.82159 0.78721 1.20229 1.21310 1.19355 1.23838 0.98394 0.83700 1.02052 1.21633 0.98439 1.00842 1.02382 1.21782 1.02416 0.94023 1.05083 1.24066 0.90943 1.00111 0.97060 1.84246 1.45247 1.25275 1.51249 0.92953 0.93454 0.90953 0.90181 0.94556 0.90731 0.95354 0.92872 0.91355 0.92959 0.91394 0.95736 0.84702 1.00181 0.96239 0.92751 0.83762 0.83832 0.78573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.96 37.16 0.37 -1.54 16 2 C 0.05 0.75 4.33 -3.82 -0.02 0.73 16 3 N -0.50 -7.12 4.09 -228.03 -0.93 -8.05 16 4 C 0.04 0.55 5.44 -3.82 -0.02 0.53 16 5 C -0.15 -1.64 10.05 37.16 0.37 -1.27 16 6 C 0.16 2.35 2.30 -68.86 -0.16 2.19 16 7 H 0.11 1.44 6.41 -51.93 -0.33 1.11 16 8 C 0.07 1.13 4.88 -3.82 -0.02 1.12 16 9 N -0.66 -13.51 6.24 -115.06 -0.72 -14.23 16 10 C 0.16 4.02 4.50 -4.98 -0.02 3.99 16 11 C -0.51 -14.68 9.87 -34.44 -0.34 -15.02 16 12 H 0.08 2.52 8.06 -52.49 -0.42 2.09 16 13 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 14 N -0.90 -27.97 13.96 55.43 0.77 -27.20 16 15 Si 0.88 21.91 27.47 -169.99 -4.67 17.24 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 18 H -0.27 -6.51 6.54 56.52 0.37 -6.14 16 19 C -0.03 -0.36 4.65 -35.62 -0.17 -0.53 16 20 C -0.21 -2.61 10.79 -39.70 -0.43 -3.04 16 21 C -0.21 -2.34 10.91 -39.70 -0.43 -2.77 16 22 C -0.05 -0.58 12.09 29.42 0.36 -0.23 16 23 O -0.16 -2.20 7.70 5.72 0.04 -2.16 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.56 6.49 -51.93 -0.34 0.23 16 26 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.08 1.29 6.02 -51.93 -0.31 0.97 16 28 H 0.04 0.50 5.99 -51.93 -0.31 0.19 16 29 H 0.07 0.88 6.22 -51.93 -0.32 0.55 16 30 H 0.03 0.35 7.10 -51.93 -0.37 -0.02 16 31 H 0.05 0.60 6.56 -51.93 -0.34 0.26 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 1.22 6.50 -51.93 -0.34 0.88 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.34 6.72 8.67 -39.29 -0.34 6.38 16 37 H -0.02 -0.48 7.20 -51.93 -0.37 -0.85 16 38 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 39 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 40 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 41 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 42 H 0.20 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 331.42 15.07 4.99 4.99 Total: -1.00 -31.30 331.42 -7.85 -39.15 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -6.74 Total: 4.20 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -0.60 Total: -13.95 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: -0.88 Total: -49.48 kcal Atomic # 8 Polarization: -2.20 SS G_CDS: 0.04 Total: -2.16 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.30 -7.85 -39.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573914316.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.328 kcal (2) G-P(sol) polarization free energy of solvation -31.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds