Wall clock time and date at job start Mon Mar 30 2020 00:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46904 * 109.47348 * 2 1 4 4 C 1.46906 * 110.99601 * 71.05106 * 3 2 1 5 5 C 1.52998 * 109.46535 * 197.32215 * 4 3 2 6 6 C 1.46893 * 111.00298 * 195.00951 * 3 2 1 7 7 H 1.09001 * 109.47061 * 185.54024 * 6 3 2 8 8 C 1.52999 * 109.47335 * 65.53654 * 6 3 2 9 9 N 1.46899 * 109.47073 * 54.82287 * 8 6 3 10 10 C 1.46894 * 111.00326 * 175.95503 * 9 8 6 11 11 C 1.50702 * 109.47410 * 179.97438 * 10 9 8 12 12 H 1.07995 * 119.99806 * 0.02562 * 11 10 9 13 13 C 1.37881 * 120.00069 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99750 * 180.02562 * 13 11 10 15 15 Si 1.86795 * 120.00019 * 0.02562 * 13 11 10 16 16 H 1.48507 * 109.47136 * 89.99784 * 15 13 11 17 17 H 1.48502 * 109.47301 * 209.99784 * 15 13 11 18 18 H 1.48499 * 109.47251 * 330.00355 * 15 13 11 19 19 C 1.50709 * 109.47107 * 305.54059 * 6 3 2 20 20 C 1.34512 * 125.78687 * 228.49624 * 19 6 3 21 21 C 1.41385 * 106.83945 * 179.88913 * 20 19 6 22 22 C 1.34518 * 106.84009 * 0.36504 * 21 20 19 23 23 O 1.34301 * 125.79076 * 48.79392 * 19 6 3 24 24 H 1.09005 * 109.46907 * 179.97438 * 1 2 3 25 25 H 1.08990 * 109.47177 * 299.99908 * 1 2 3 26 26 H 1.09003 * 109.47190 * 60.00415 * 1 2 3 27 27 H 1.09004 * 109.47103 * 240.00230 * 2 1 3 28 28 H 1.09003 * 109.47161 * 120.00141 * 2 1 3 29 29 H 1.08991 * 109.47300 * 317.32220 * 4 3 2 30 30 H 1.08994 * 109.46422 * 77.32475 * 4 3 2 31 31 H 1.08994 * 109.47570 * 303.87069 * 5 4 3 32 32 H 1.09001 * 109.47439 * 63.88064 * 5 4 3 33 33 H 1.09005 * 109.46606 * 183.87669 * 5 4 3 34 34 H 1.09006 * 109.47222 * 294.82022 * 8 6 3 35 35 H 1.09001 * 109.47074 * 174.81857 * 8 6 3 36 36 H 1.00896 * 111.00192 * 51.99691 * 9 8 6 37 37 H 1.08998 * 109.46939 * 299.99850 * 10 9 8 38 38 H 1.09003 * 109.47069 * 59.99832 * 10 9 8 39 39 H 0.97000 * 119.99910 * 180.02562 * 14 13 11 40 40 H 1.08001 * 126.58414 * 0.02562 * 20 19 6 41 41 H 1.08000 * 126.58167 * 180.16175 * 21 20 19 42 42 H 1.07994 * 125.78831 * 179.75469 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7753 2.0297 1.2972 5 6 1.8872 3.5476 1.1412 6 6 3.4440 1.4398 -0.3551 7 1 3.8050 2.4631 -0.2522 8 6 3.6271 0.9775 -1.8021 9 7 2.7687 1.7790 -2.6845 10 6 2.9888 1.4281 -4.0938 11 6 2.0926 2.2684 -4.9667 12 1 1.4265 2.9911 -4.5192 13 6 2.1238 2.1151 -6.3366 14 7 1.3421 2.8488 -7.0983 15 14 3.2765 0.8655 -7.1106 16 1 2.5818 -0.4417 -7.2293 17 1 3.6818 1.3350 -8.4599 18 1 4.4822 0.7095 -6.2579 19 6 4.2260 0.5365 0.5635 20 6 5.3510 0.8678 1.2222 21 6 5.7417 -0.2707 1.9639 22 6 4.8366 -1.2322 1.7077 23 8 3.9208 -0.7376 0.8588 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 0.7758 1.7732 1.6478 30 1 2.5140 1.6833 2.0199 31 1 2.8628 3.7993 0.7256 32 1 1.1042 3.9028 0.4713 33 1 1.7742 4.0223 2.1160 34 1 3.3523 -0.0741 -1.8851 35 1 4.6692 1.1050 -2.0952 36 1 2.9132 2.7657 -2.5308 37 1 4.0303 1.6141 -4.3562 38 1 2.7585 0.3736 -4.2459 39 1 1.3638 2.7407 -8.0620 40 1 5.8573 1.8213 1.1922 41 1 6.6035 -0.3536 2.6095 42 1 4.8451 -2.2323 2.1151 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573914316.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:10 Heat of formation + Delta-G solvation = 4.384175 kcal Electronic energy + Delta-G solvation = -21098.620040 eV Core-core repulsion = 18079.825135 eV Total energy + Delta-G solvation = -3018.794905 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.59053 -39.54678 -36.81464 -34.62492 -34.02937 -32.68469 -32.60168 -29.85335 -29.15865 -26.97445 -24.10428 -23.68698 -23.04042 -22.50596 -22.02228 -20.69131 -18.95478 -18.04942 -17.43115 -16.96910 -16.59521 -16.36124 -15.79916 -15.53835 -15.24682 -14.98215 -14.74312 -14.42366 -13.91658 -13.75167 -13.69289 -13.47156 -13.40472 -12.99583 -12.93395 -12.72637 -12.54067 -12.50069 -12.22865 -12.15312 -11.82428 -11.61617 -11.44876 -11.41688 -10.81533 -10.78439 -9.43756 -9.16921 -8.98668 -8.27219 -6.30491 0.78740 1.35272 1.36111 1.47167 1.70570 2.07963 2.35312 2.97674 3.06813 3.42298 3.85142 3.92781 4.09509 4.13604 4.24257 4.30137 4.35244 4.39459 4.57255 4.65084 4.65855 4.74424 4.76013 4.84170 4.86480 4.95671 4.99735 5.06873 5.08701 5.16988 5.21295 5.24524 5.42002 5.48388 5.55588 5.60778 5.96915 6.11297 6.22889 6.33293 6.62173 6.72219 6.83363 7.34194 8.89606 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019762 B = 0.005206 C = 0.004702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.503473 B = 5376.699514 C = 5953.190876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.058 3.942 3 N -0.516 5.516 4 C 0.049 3.951 5 C -0.141 4.141 6 C 0.174 3.826 7 H 0.115 0.885 8 C 0.071 3.929 9 N -0.661 5.661 10 C 0.176 3.824 11 C -0.520 4.520 12 H 0.039 0.961 13 C 0.009 3.991 14 N -0.947 5.947 15 Si 0.948 3.052 16 H -0.268 1.268 17 H -0.280 1.280 18 H -0.253 1.253 19 C -0.051 4.051 20 C -0.212 4.212 21 C -0.223 4.223 22 C -0.051 4.051 23 O -0.182 6.182 24 H 0.065 0.935 25 H 0.061 0.939 26 H 0.044 0.956 27 H 0.057 0.943 28 H 0.044 0.956 29 H 0.079 0.921 30 H 0.031 0.969 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.029 0.971 36 H 0.337 0.663 37 H -0.017 1.017 38 H 0.017 0.983 39 H 0.267 0.733 40 H 0.156 0.844 41 H 0.168 0.832 42 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.524 -7.020 21.871 24.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.069 4.069 3 N -0.238 5.238 4 C -0.078 4.078 5 C -0.199 4.199 6 C 0.065 3.935 7 H 0.133 0.867 8 C -0.059 4.059 9 N -0.292 5.292 10 C 0.047 3.953 11 C -0.558 4.558 12 H 0.058 0.942 13 C -0.188 4.188 14 N -0.588 5.588 15 Si 0.772 3.228 16 H -0.193 1.193 17 H -0.206 1.206 18 H -0.177 1.177 19 C -0.103 4.103 20 C -0.232 4.232 21 C -0.242 4.242 22 C -0.118 4.118 23 O -0.079 6.079 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.098 0.902 30 H 0.049 0.951 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.047 0.953 36 H 0.155 0.845 37 H 0.001 0.999 38 H 0.035 0.965 39 H 0.076 0.924 40 H 0.174 0.826 41 H 0.185 0.815 42 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 6.381 -7.286 21.279 23.380 hybrid contribution 1.728 -0.284 -0.313 1.779 sum 8.110 -7.570 20.967 23.721 Atomic orbital electron populations 1.21712 0.94479 1.01633 1.01803 1.22084 0.96192 0.88327 1.00342 1.62104 1.13789 1.17686 1.30236 1.22162 1.01105 0.95603 0.88918 1.21735 1.01936 0.94267 1.01959 1.20476 0.86489 0.96090 0.90486 0.86714 1.21974 0.94225 0.98268 0.91383 1.60198 1.56023 1.09064 1.03884 1.19739 0.93393 0.95610 0.86533 1.21301 1.22110 1.21016 0.91385 0.94224 1.25824 0.97272 0.97987 0.97740 1.70050 1.41031 1.42441 1.05304 0.85708 0.79958 0.79266 0.77913 1.19306 1.20554 1.17705 1.23556 0.99250 0.84111 1.03374 1.21927 0.97736 1.01803 1.01733 1.22117 1.03314 0.93420 1.05342 1.24838 0.89889 1.01417 0.95679 1.84216 1.46295 1.25296 1.52057 0.91582 0.92027 0.93650 0.92480 0.93780 0.90237 0.95109 0.93003 0.92876 0.90888 0.92312 0.95340 0.84493 0.99916 0.96475 0.92434 0.82630 0.81480 0.75198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.63 9.96 71.98 0.72 -2.91 16 2 C 0.06 1.63 4.33 86.30 0.37 2.00 16 3 N -0.52 -14.53 4.09 -875.37 -3.58 -18.11 16 4 C 0.05 1.15 5.44 86.30 0.47 1.62 16 5 C -0.14 -3.04 10.05 71.98 0.72 -2.32 16 6 C 0.17 4.84 2.30 44.17 0.10 4.94 16 7 H 0.12 2.97 6.41 -2.39 -0.02 2.95 16 8 C 0.07 2.42 4.88 86.30 0.42 2.84 16 9 N -0.66 -27.52 6.24 -517.93 -3.23 -30.75 16 10 C 0.18 8.64 4.50 85.56 0.39 9.02 16 11 C -0.52 -30.71 9.87 25.60 0.25 -30.46 16 12 H 0.04 2.60 8.06 -2.91 -0.02 2.57 16 13 C 0.01 0.54 5.47 84.66 0.46 1.00 16 14 N -0.95 -60.08 13.96 21.45 0.30 -59.79 16 15 Si 0.95 45.06 27.47 68.60 1.88 46.95 16 16 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 17 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 18 H -0.25 -11.32 6.54 99.48 0.65 -10.67 16 19 C -0.05 -1.29 4.65 24.84 0.12 -1.17 16 20 C -0.21 -4.73 10.79 22.19 0.24 -4.49 16 21 C -0.22 -4.20 10.91 22.19 0.24 -3.96 16 22 C -0.05 -0.95 12.09 66.97 0.81 -0.14 16 23 O -0.18 -4.56 7.70 -2.45 -0.02 -4.58 16 24 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 25 H 0.06 1.41 6.49 -2.39 -0.02 1.39 16 26 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.06 1.85 6.02 -2.39 -0.01 1.84 16 28 H 0.04 1.17 5.99 -2.39 -0.01 1.16 16 29 H 0.08 1.75 6.22 -2.39 -0.01 1.74 16 30 H 0.03 0.71 7.10 -2.39 -0.02 0.69 16 31 H 0.05 1.12 6.56 -2.39 -0.02 1.10 16 32 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.06 2.10 6.50 -2.38 -0.02 2.09 16 35 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.34 13.76 8.67 -89.70 -0.78 12.98 16 37 H -0.02 -0.81 7.20 -2.39 -0.02 -0.83 16 38 H 0.02 0.85 7.57 -2.39 -0.02 0.84 16 39 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 40 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 41 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 42 H 0.23 2.37 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -68.25 331.42 0.84 -67.41 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: 0.17 Total: 22.87 kcal Atomic # 6 Polarization: -29.33 SS G_CDS: 5.31 Total: -24.02 kcal Atomic # 7 Polarization: -102.13 SS G_CDS: -6.51 Total: -108.64 kcal Atomic # 8 Polarization: -4.56 SS G_CDS: -0.02 Total: -4.58 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.88 Total: 46.95 kcal Total: -68.25 0.84 -67.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573914316.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.798 kcal (2) G-P(sol) polarization free energy of solvation -68.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds