Wall clock time and date at job start Mon Mar 30 2020 00:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46902 * 109.46977 * 2 1 4 4 C 1.46896 * 110.99944 * 160.36321 * 3 2 1 5 5 C 1.53005 * 109.47057 * 287.28481 * 4 3 2 6 6 C 1.46902 * 111.00033 * 284.31677 * 3 2 1 7 7 H 1.08994 * 109.47113 * 54.99691 * 6 3 2 8 8 C 1.53001 * 109.47059 * 174.99987 * 6 3 2 9 9 N 1.46897 * 109.47179 * 304.99789 * 8 6 3 10 10 C 1.46896 * 110.99892 * 179.97438 * 9 8 6 11 11 C 1.50706 * 109.47168 * 179.97438 * 10 9 8 12 12 H 1.08001 * 119.99678 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00304 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99616 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99988 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47020 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46940 * 120.00368 * 15 13 11 18 18 H 1.48498 * 109.47037 * 239.99763 * 15 13 11 19 19 C 1.50699 * 109.46936 * 294.99887 * 6 3 2 20 20 C 1.34517 * 125.78770 * 140.00432 * 19 6 3 21 21 C 1.41387 * 106.84140 * 180.02562 * 20 19 6 22 22 C 1.34518 * 106.84006 * 359.97438 * 21 20 19 23 23 O 1.34306 * 125.78985 * 319.69134 * 19 6 3 24 24 H 1.08997 * 109.46651 * 185.39426 * 1 2 3 25 25 H 1.09000 * 109.46800 * 305.39402 * 1 2 3 26 26 H 1.09002 * 109.47222 * 65.39629 * 1 2 3 27 27 H 1.09001 * 109.46875 * 240.00587 * 2 1 3 28 28 H 1.08998 * 109.47487 * 120.00404 * 2 1 3 29 29 H 1.09000 * 109.47575 * 47.28131 * 4 3 2 30 30 H 1.08995 * 109.47264 * 167.28488 * 4 3 2 31 31 H 1.09003 * 109.46865 * 297.41075 * 5 4 3 32 32 H 1.08997 * 109.47336 * 57.41051 * 5 4 3 33 33 H 1.09003 * 109.47241 * 177.41239 * 5 4 3 34 34 H 1.08997 * 109.46978 * 184.99706 * 8 6 3 35 35 H 1.09005 * 109.46787 * 64.99846 * 8 6 3 36 36 H 1.00901 * 111.00236 * 303.95599 * 9 8 6 37 37 H 1.08998 * 109.47753 * 300.00140 * 10 9 8 38 38 H 1.09005 * 109.47241 * 60.00621 * 10 9 8 39 39 H 0.97002 * 119.99478 * 180.02562 * 14 13 11 40 40 H 1.07997 * 126.58444 * 0.02886 * 20 19 6 41 41 H 1.07997 * 126.58557 * 179.97438 * 21 20 19 42 42 H 1.08000 * 125.78915 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4129 1.4508 0.4609 5 6 3.4632 1.2025 1.9698 6 6 1.8754 1.9944 -1.3289 7 1 0.8381 1.9155 -1.6540 8 6 2.2777 3.4690 -1.2601 9 7 1.4915 4.1430 -0.2182 10 6 1.8522 5.5638 -0.1230 11 6 1.0266 6.2206 0.9533 12 1 0.3064 5.6404 1.5110 13 6 1.1908 7.5621 1.2259 14 7 2.0675 8.2687 0.5464 15 14 0.1680 8.3760 2.5604 16 1 -0.7376 7.3707 3.1723 17 1 1.0671 8.9315 3.6036 18 1 -0.6381 9.4727 1.9667 19 6 2.7655 1.2761 -2.3101 20 6 2.4468 0.9649 -3.5794 21 6 3.5659 0.3002 -4.1315 22 6 4.5017 0.2455 -3.1668 23 8 4.0135 0.8434 -2.0676 24 1 -0.3632 -1.0231 0.0966 25 1 -0.3633 0.5952 0.8378 26 1 -0.3634 0.4279 -0.9344 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 4.0017 0.6905 -0.0522 30 1 3.8221 2.4368 0.2411 31 1 2.9127 1.9890 2.4860 32 1 3.0121 0.2359 2.1942 33 1 4.5007 1.2056 2.3042 34 1 2.0869 3.9429 -2.2229 35 1 3.3385 3.5454 -1.0214 36 1 0.5023 4.0309 -0.3823 37 1 2.9100 5.6545 0.1238 38 1 1.6586 6.0526 -1.0778 39 1 2.1832 9.2124 0.7384 40 1 1.5150 1.1812 -4.0807 41 1 3.6528 -0.0890 -5.1352 42 1 5.4812 -0.1994 -3.2615 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573914320.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:14 Heat of formation + Delta-G solvation = 22.046516 kcal Electronic energy + Delta-G solvation = -21065.306837 eV Core-core repulsion = 18047.277828 eV Total energy + Delta-G solvation = -3018.029009 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.60776 -38.33449 -35.00933 -33.12420 -32.54662 -31.56319 -31.14583 -28.40040 -27.42963 -25.26368 -22.97289 -22.35838 -21.68262 -21.39732 -20.83048 -19.60481 -17.09875 -16.56729 -15.93599 -15.76777 -15.28927 -14.87878 -14.34664 -14.15177 -13.93612 -13.66409 -13.05867 -12.79074 -12.76439 -12.56710 -12.35398 -12.09265 -11.83840 -11.81934 -11.43426 -11.27027 -11.17870 -11.03707 -10.67751 -10.58575 -10.45977 -10.19498 -9.92186 -9.82925 -9.12450 -8.42851 -8.40881 -8.04664 -7.12946 -5.97812 -3.98777 1.76805 2.63571 3.01828 3.34827 3.42049 3.47713 4.11572 4.47322 4.64671 4.98723 5.04402 5.13884 5.20637 5.38434 5.38790 5.45592 5.53001 5.63333 5.68198 5.76572 5.81972 5.84577 5.89860 5.91576 5.97882 6.12845 6.18613 6.23619 6.26835 6.40908 6.49770 6.52207 6.65555 7.10983 7.28247 7.38207 7.42586 7.48748 7.86260 8.19480 8.49448 8.70267 9.11750 9.65992 11.13541 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.021825 B = 0.004797 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.626108 B = 5835.688536 C = 6312.588279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.045 3.955 3 N -0.498 5.498 4 C 0.050 3.950 5 C -0.143 4.143 6 C 0.167 3.833 7 H 0.106 0.894 8 C 0.068 3.932 9 N -0.667 5.667 10 C 0.194 3.806 11 C -0.507 4.507 12 H 0.064 0.936 13 C 0.054 3.946 14 N -0.900 5.900 15 Si 0.898 3.102 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.286 1.286 19 C -0.025 4.025 20 C -0.215 4.215 21 C -0.213 4.213 22 C -0.056 4.056 23 O -0.165 6.165 24 H 0.051 0.949 25 H 0.068 0.932 26 H 0.050 0.950 27 H 0.029 0.971 28 H 0.072 0.928 29 H 0.038 0.962 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.045 0.955 33 H 0.050 0.950 34 H 0.024 0.976 35 H 0.068 0.932 36 H 0.329 0.671 37 H 0.026 0.974 38 H -0.017 1.017 39 H 0.260 0.740 40 H 0.144 0.856 41 H 0.143 0.857 42 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.103 -18.335 -5.982 19.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.082 4.082 3 N -0.220 5.220 4 C -0.077 4.077 5 C -0.200 4.200 6 C 0.056 3.944 7 H 0.124 0.876 8 C -0.062 4.062 9 N -0.297 5.297 10 C 0.068 3.932 11 C -0.546 4.546 12 H 0.082 0.918 13 C -0.147 4.147 14 N -0.540 5.540 15 Si 0.726 3.274 16 H -0.196 1.196 17 H -0.211 1.211 18 H -0.212 1.212 19 C -0.078 4.078 20 C -0.235 4.235 21 C -0.232 4.232 22 C -0.124 4.124 23 O -0.061 6.061 24 H 0.070 0.930 25 H 0.087 0.913 26 H 0.069 0.931 27 H 0.047 0.953 28 H 0.091 0.909 29 H 0.056 0.944 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.042 0.958 35 H 0.086 0.914 36 H 0.145 0.855 37 H 0.044 0.956 38 H 0.001 0.999 39 H 0.069 0.931 40 H 0.162 0.838 41 H 0.161 0.839 42 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 2.460 -18.024 -4.833 18.822 hybrid contribution -0.318 0.376 -1.194 1.292 sum 2.142 -17.648 -6.027 18.771 Atomic orbital electron populations 1.21752 0.95001 1.00914 1.02575 1.22160 0.96179 0.89499 1.00393 1.62044 1.21145 1.16447 1.22396 1.22210 0.87792 1.01990 0.95672 1.21744 1.00825 1.01718 0.95738 1.20750 0.95624 0.93748 0.84238 0.87618 1.21951 0.99688 0.90291 0.94279 1.60508 1.08202 1.16221 1.44752 1.19559 0.97066 0.81275 0.95337 1.21225 1.21171 0.93682 1.18485 0.91790 1.24987 0.95660 0.97373 0.96655 1.69981 1.35045 1.07820 1.41155 0.86447 0.80080 0.79236 0.81676 1.19612 1.21098 1.21218 1.23912 0.84457 1.01796 0.97600 1.21620 1.01210 1.05931 0.94757 1.21775 0.94697 1.05946 1.00809 1.24062 1.00392 1.02572 0.85353 1.84253 1.27005 1.58047 1.36782 0.93010 0.91258 0.93138 0.95277 0.90926 0.94420 0.89969 0.91072 0.93552 0.93056 0.95808 0.91395 0.85492 0.95629 0.99949 0.93086 0.83787 0.83872 0.78628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.93 37.16 0.37 -1.29 16 2 C 0.05 0.57 5.42 -3.82 -0.02 0.55 16 3 N -0.50 -7.35 4.10 -228.04 -0.93 -8.29 16 4 C 0.05 0.76 4.53 -3.82 -0.02 0.74 16 5 C -0.14 -1.97 10.02 37.16 0.37 -1.60 16 6 C 0.17 2.48 2.37 -68.86 -0.16 2.31 16 7 H 0.11 1.48 6.83 -51.93 -0.35 1.13 16 8 C 0.07 1.23 4.75 -3.82 -0.02 1.22 16 9 N -0.67 -14.16 6.21 -115.06 -0.72 -14.88 16 10 C 0.19 5.12 5.44 -4.98 -0.03 5.09 16 11 C -0.51 -14.43 9.32 -34.44 -0.32 -14.75 16 12 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 13 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 14 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 15 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 16 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 17 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 C -0.02 -0.35 4.53 -35.62 -0.16 -0.51 16 20 C -0.22 -2.79 10.80 -39.70 -0.43 -3.22 16 21 C -0.21 -2.46 10.91 -39.70 -0.43 -2.89 16 22 C -0.06 -0.64 12.09 29.42 0.36 -0.28 16 23 O -0.17 -2.31 7.65 5.68 0.04 -2.27 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.05 0.57 7.04 -51.93 -0.37 0.21 16 27 H 0.03 0.38 6.85 -51.93 -0.36 0.02 16 28 H 0.07 0.88 6.26 -51.93 -0.33 0.55 16 29 H 0.04 0.55 5.83 -51.93 -0.30 0.24 16 30 H 0.08 1.41 5.75 -51.93 -0.30 1.11 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.05 0.58 6.51 -51.93 -0.34 0.24 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.07 1.30 6.36 -51.93 -0.33 0.97 16 36 H 0.33 6.72 8.72 -39.29 -0.34 6.38 16 37 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 38 H -0.02 -0.48 8.14 -51.93 -0.42 -0.91 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.14 1.65 8.06 -52.49 -0.42 1.23 16 41 H 0.14 1.31 8.06 -52.49 -0.42 0.88 16 42 H 0.20 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 335.12 15.07 5.05 5.05 Total: -1.00 -30.68 335.12 -8.22 -38.90 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -6.79 Total: 4.23 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -0.59 Total: -13.17 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: -0.91 Total: -49.63 kcal Atomic # 8 Polarization: -2.31 SS G_CDS: 0.04 Total: -2.27 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.68 -8.22 -38.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573914320.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.942 kcal (2) G-P(sol) polarization free energy of solvation -30.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds