Wall clock time and date at job start Mon Mar 30 2020 00:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46902 * 109.46977 * 2 1 4 4 C 1.46896 * 110.99944 * 160.36321 * 3 2 1 5 5 C 1.53005 * 109.47057 * 287.28481 * 4 3 2 6 6 C 1.46902 * 111.00033 * 284.31677 * 3 2 1 7 7 H 1.08994 * 109.47113 * 54.99691 * 6 3 2 8 8 C 1.53001 * 109.47059 * 174.99987 * 6 3 2 9 9 N 1.46897 * 109.47179 * 304.99789 * 8 6 3 10 10 C 1.46896 * 110.99892 * 179.97438 * 9 8 6 11 11 C 1.50706 * 109.47168 * 179.97438 * 10 9 8 12 12 H 1.08001 * 119.99678 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00304 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99616 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99988 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47020 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46940 * 120.00368 * 15 13 11 18 18 H 1.48498 * 109.47037 * 239.99763 * 15 13 11 19 19 C 1.50699 * 109.46936 * 294.99887 * 6 3 2 20 20 C 1.34517 * 125.78770 * 140.00432 * 19 6 3 21 21 C 1.41387 * 106.84140 * 180.02562 * 20 19 6 22 22 C 1.34518 * 106.84006 * 359.97438 * 21 20 19 23 23 O 1.34306 * 125.78985 * 319.69134 * 19 6 3 24 24 H 1.08997 * 109.46651 * 185.39426 * 1 2 3 25 25 H 1.09000 * 109.46800 * 305.39402 * 1 2 3 26 26 H 1.09002 * 109.47222 * 65.39629 * 1 2 3 27 27 H 1.09001 * 109.46875 * 240.00587 * 2 1 3 28 28 H 1.08998 * 109.47487 * 120.00404 * 2 1 3 29 29 H 1.09000 * 109.47575 * 47.28131 * 4 3 2 30 30 H 1.08995 * 109.47264 * 167.28488 * 4 3 2 31 31 H 1.09003 * 109.46865 * 297.41075 * 5 4 3 32 32 H 1.08997 * 109.47336 * 57.41051 * 5 4 3 33 33 H 1.09003 * 109.47241 * 177.41239 * 5 4 3 34 34 H 1.08997 * 109.46978 * 184.99706 * 8 6 3 35 35 H 1.09005 * 109.46787 * 64.99846 * 8 6 3 36 36 H 1.00901 * 111.00236 * 303.95599 * 9 8 6 37 37 H 1.08998 * 109.47753 * 300.00140 * 10 9 8 38 38 H 1.09005 * 109.47241 * 60.00621 * 10 9 8 39 39 H 0.97002 * 119.99478 * 180.02562 * 14 13 11 40 40 H 1.07997 * 126.58444 * 0.02886 * 20 19 6 41 41 H 1.07997 * 126.58557 * 179.97438 * 21 20 19 42 42 H 1.08000 * 125.78915 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4129 1.4508 0.4609 5 6 3.4632 1.2025 1.9698 6 6 1.8754 1.9944 -1.3289 7 1 0.8381 1.9155 -1.6540 8 6 2.2777 3.4690 -1.2601 9 7 1.4915 4.1430 -0.2182 10 6 1.8522 5.5638 -0.1230 11 6 1.0266 6.2206 0.9533 12 1 0.3064 5.6404 1.5110 13 6 1.1908 7.5621 1.2259 14 7 2.0675 8.2687 0.5464 15 14 0.1680 8.3760 2.5604 16 1 -0.7376 7.3707 3.1723 17 1 1.0671 8.9315 3.6036 18 1 -0.6381 9.4727 1.9667 19 6 2.7655 1.2761 -2.3101 20 6 2.4468 0.9649 -3.5794 21 6 3.5659 0.3002 -4.1315 22 6 4.5017 0.2455 -3.1668 23 8 4.0135 0.8434 -2.0676 24 1 -0.3632 -1.0231 0.0966 25 1 -0.3633 0.5952 0.8378 26 1 -0.3634 0.4279 -0.9344 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 4.0017 0.6905 -0.0522 30 1 3.8221 2.4368 0.2411 31 1 2.9127 1.9890 2.4860 32 1 3.0121 0.2359 2.1942 33 1 4.5007 1.2056 2.3042 34 1 2.0869 3.9429 -2.2229 35 1 3.3385 3.5454 -1.0214 36 1 0.5023 4.0309 -0.3823 37 1 2.9100 5.6545 0.1238 38 1 1.6586 6.0526 -1.0778 39 1 2.1832 9.2124 0.7384 40 1 1.5150 1.1812 -4.0807 41 1 3.6528 -0.0890 -5.1352 42 1 5.4812 -0.1994 -3.2615 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573914320.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:13 Heat of formation + Delta-G solvation = 1.458176 kcal Electronic energy + Delta-G solvation = -21066.199614 eV Core-core repulsion = 18047.277828 eV Total energy + Delta-G solvation = -3018.921786 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.58912 -39.53444 -36.75263 -34.64938 -34.00927 -32.64659 -32.49575 -29.58477 -29.00983 -26.90720 -24.19032 -23.86342 -23.12773 -22.56125 -22.01039 -20.69997 -18.61211 -18.04070 -17.32671 -16.97021 -16.64426 -16.37981 -15.81911 -15.55241 -15.20639 -14.93696 -14.45490 -14.41911 -13.77248 -13.72131 -13.61852 -13.41592 -13.34248 -12.95056 -12.90271 -12.70880 -12.61836 -12.54620 -12.25292 -12.20630 -11.95302 -11.59274 -11.39375 -11.25595 -10.82848 -10.64068 -9.41565 -9.17579 -8.97109 -8.19408 -6.29696 0.78606 1.42911 1.43859 1.58088 1.70243 2.06349 2.43028 2.99589 3.14310 3.48209 3.88799 3.92119 4.11059 4.13532 4.24324 4.31019 4.38290 4.40073 4.58752 4.66559 4.67022 4.76196 4.77522 4.87313 4.95284 5.00385 5.06893 5.12332 5.16943 5.21765 5.26260 5.30618 5.43794 5.50616 5.60632 5.65676 6.04080 6.10514 6.24506 6.34108 6.50501 6.78787 6.95921 7.41329 8.92691 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.021825 B = 0.004797 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.626108 B = 5835.688536 C = 6312.588279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.049 3.951 3 N -0.512 5.512 4 C 0.055 3.945 5 C -0.136 4.136 6 C 0.179 3.821 7 H 0.116 0.884 8 C 0.074 3.926 9 N -0.660 5.660 10 C 0.211 3.789 11 C -0.526 4.526 12 H 0.066 0.934 13 C 0.000 4.000 14 N -0.937 5.937 15 Si 0.973 3.027 16 H -0.261 1.261 17 H -0.280 1.280 18 H -0.278 1.278 19 C -0.050 4.050 20 C -0.215 4.215 21 C -0.222 4.222 22 C -0.053 4.053 23 O -0.183 6.183 24 H 0.072 0.928 25 H 0.056 0.944 26 H 0.049 0.951 27 H 0.029 0.971 28 H 0.079 0.921 29 H 0.046 0.954 30 H 0.052 0.948 31 H 0.045 0.955 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.020 0.980 35 H 0.051 0.949 36 H 0.336 0.664 37 H -0.006 1.006 38 H -0.043 1.043 39 H 0.264 0.736 40 H 0.156 0.844 41 H 0.168 0.832 42 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.440 -20.000 -5.959 20.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.078 4.078 3 N -0.235 5.235 4 C -0.072 4.072 5 C -0.194 4.194 6 C 0.069 3.931 7 H 0.133 0.867 8 C -0.056 4.056 9 N -0.290 5.290 10 C 0.083 3.917 11 C -0.564 4.564 12 H 0.084 0.916 13 C -0.198 4.198 14 N -0.578 5.578 15 Si 0.797 3.203 16 H -0.185 1.185 17 H -0.206 1.206 18 H -0.204 1.204 19 C -0.102 4.102 20 C -0.235 4.235 21 C -0.241 4.241 22 C -0.120 4.120 23 O -0.080 6.080 24 H 0.091 0.909 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.047 0.953 28 H 0.098 0.902 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.039 0.961 35 H 0.069 0.931 36 H 0.153 0.847 37 H 0.012 0.988 38 H -0.026 1.026 39 H 0.072 0.928 40 H 0.174 0.826 41 H 0.186 0.814 42 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 1.786 -19.718 -4.820 20.376 hybrid contribution -0.032 0.831 -1.292 1.536 sum 1.754 -18.886 -6.112 19.928 Atomic orbital electron populations 1.21719 0.94023 1.02024 1.01999 1.22180 0.96872 0.88067 1.00658 1.62067 1.20978 1.18042 1.22385 1.22101 0.88169 1.00462 0.96457 1.21687 1.01428 1.01629 0.94629 1.20441 0.96345 0.91293 0.85042 0.86666 1.21914 0.98249 0.92625 0.92835 1.60350 1.08931 1.13196 1.46508 1.19183 0.94938 0.83922 0.93643 1.21549 1.21505 0.94342 1.19027 0.91595 1.25948 0.96770 0.98019 0.99052 1.70112 1.36566 1.08318 1.42825 0.85280 0.78392 0.78201 0.78386 1.18523 1.20588 1.20358 1.23633 0.84983 1.03671 0.97949 1.21929 1.02137 1.05112 0.94298 1.22122 0.94071 1.05882 1.02053 1.24856 1.01577 1.01178 0.84373 1.84219 1.27023 1.58595 1.38121 0.90900 0.92507 0.93151 0.95295 0.90217 0.93637 0.92996 0.93576 0.91811 0.91824 0.96146 0.93073 0.84707 0.98832 1.02585 0.92754 0.82648 0.81399 0.75145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 9.93 71.98 0.72 -2.25 16 2 C 0.05 1.18 5.42 86.30 0.47 1.65 16 3 N -0.51 -14.99 4.10 -875.38 -3.59 -18.57 16 4 C 0.06 1.67 4.53 86.31 0.39 2.06 16 5 C -0.14 -3.72 10.02 71.98 0.72 -3.00 16 6 C 0.18 5.31 2.37 44.17 0.10 5.41 16 7 H 0.12 3.16 6.83 -2.39 -0.02 3.14 16 8 C 0.07 2.77 4.75 86.30 0.41 3.18 16 9 N -0.66 -28.97 6.21 -517.93 -3.22 -32.19 16 10 C 0.21 11.61 5.44 85.56 0.47 12.08 16 11 C -0.53 -30.50 9.32 25.60 0.24 -30.27 16 12 H 0.07 3.72 7.81 -2.91 -0.02 3.70 16 13 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 14 N -0.94 -57.78 13.29 21.45 0.28 -57.49 16 15 Si 0.97 45.03 29.54 68.60 2.03 47.05 16 16 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 17 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 18 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 19 C -0.05 -1.38 4.53 24.83 0.11 -1.27 16 20 C -0.21 -5.23 10.80 22.19 0.24 -4.99 16 21 C -0.22 -4.59 10.91 22.19 0.24 -4.35 16 22 C -0.05 -1.08 12.09 66.97 0.81 -0.27 16 23 O -0.18 -4.94 7.65 -2.60 -0.02 -4.96 16 24 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.05 1.06 7.04 -2.39 -0.02 1.04 16 27 H 0.03 0.70 6.85 -2.39 -0.02 0.69 16 28 H 0.08 1.77 6.26 -2.39 -0.01 1.76 16 29 H 0.05 1.30 5.83 -2.39 -0.01 1.28 16 30 H 0.05 1.87 5.75 -2.39 -0.01 1.85 16 31 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.06 1.50 6.51 -2.39 -0.02 1.48 16 33 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.05 2.08 6.36 -2.38 -0.02 2.07 16 36 H 0.34 13.96 8.72 -89.69 -0.78 13.17 16 37 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 38 H -0.04 -2.57 8.14 -2.38 -0.02 -2.59 16 39 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 40 H 0.16 3.29 8.06 -2.91 -0.02 3.27 16 41 H 0.17 2.53 8.06 -2.91 -0.02 2.50 16 42 H 0.23 2.74 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -67.01 335.12 1.08 -65.93 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: 0.22 Total: 21.80 kcal Atomic # 6 Polarization: -26.94 SS G_CDS: 5.38 Total: -21.57 kcal Atomic # 7 Polarization: -101.73 SS G_CDS: -6.52 Total: -108.25 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: -0.02 Total: -4.96 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -67.01 1.08 -65.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573914320.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.385 kcal (2) G-P(sol) polarization free energy of solvation -67.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds