Wall clock time and date at job start Mon Mar 30 2020 00:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21280 * 120.00390 * 2 1 4 4 N 1.34784 * 119.99846 * 180.02562 * 2 1 3 5 5 C 1.48236 * 125.78018 * 0.02562 * 4 2 1 6 6 C 1.52333 * 105.86523 * 176.81405 * 5 4 2 7 7 H 1.09000 * 110.24725 * 272.17090 * 6 5 4 8 8 C 1.51442 * 117.44939 * 145.30192 * 6 5 4 9 9 C 1.53846 * 107.04074 * 181.23517 * 8 6 5 10 10 C 1.52523 * 111.66177 * 57.19665 * 9 8 6 11 11 C 1.53811 * 111.70336 * 305.95830 * 10 9 8 12 12 H 1.09005 * 109.94244 * 298.15393 * 11 10 9 13 13 N 1.46907 * 109.94124 * 176.99899 * 11 10 9 14 14 C 1.46904 * 110.99972 * 85.00123 * 13 11 10 15 15 C 1.50694 * 109.47002 * 179.97438 * 14 13 11 16 16 H 1.08006 * 120.00274 * 359.97438 * 15 14 13 17 17 C 1.37873 * 119.99864 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00195 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 120.00333 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.46944 * 90.00235 * 19 17 15 21 21 H 1.48499 * 109.47537 * 210.00451 * 19 17 15 22 22 H 1.48500 * 109.47104 * 330.00781 * 19 17 15 23 23 C 1.51615 * 107.02001 * 57.53589 * 11 10 9 24 24 H 1.09001 * 110.50410 * 56.32778 * 23 11 10 25 25 C 1.48657 * 125.78611 * 179.97438 * 4 2 1 26 26 H 1.08997 * 109.47020 * 270.00083 * 1 2 3 27 27 H 1.09005 * 109.46611 * 29.99456 * 1 2 3 28 28 H 1.08997 * 109.47643 * 149.99599 * 1 2 3 29 29 H 1.09005 * 110.17259 * 295.90975 * 5 4 2 30 30 H 1.09003 * 110.17723 * 57.64343 * 5 4 2 31 31 H 1.08998 * 109.93779 * 61.85680 * 8 6 5 32 32 H 1.08999 * 109.94198 * 300.61807 * 8 6 5 33 33 H 1.08998 * 109.03996 * 177.75905 * 9 8 6 34 34 H 1.08995 * 109.04252 * 296.70663 * 9 8 6 35 35 H 1.09006 * 109.03349 * 66.53315 * 10 9 8 36 36 H 1.09004 * 109.03228 * 185.38245 * 10 9 8 37 37 H 1.00893 * 111.00087 * 321.04290 * 13 11 10 38 38 H 1.09003 * 109.46968 * 299.99526 * 14 13 11 39 39 H 1.08994 * 109.46987 * 59.99499 * 14 13 11 40 40 H 0.96996 * 120.00607 * 180.02562 * 18 17 15 41 41 H 1.09003 * 110.62254 * 37.13451 * 25 4 2 42 42 H 1.09002 * 110.63160 * 274.12020 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 1.5727 -2.5191 -0.0017 6 6 2.7361 -3.4991 -0.0833 7 1 2.9977 -3.6881 -1.1244 8 6 2.5966 -4.8117 0.6591 9 6 3.9040 -5.5932 0.4426 10 6 5.1188 -4.7996 0.9126 11 6 5.1737 -3.4061 0.2638 12 1 5.2643 -3.5031 -0.8181 13 7 6.3153 -2.6502 0.7962 14 6 7.5462 -2.9674 0.0597 15 6 8.6926 -2.1746 0.6324 16 1 8.5237 -1.5019 1.4603 17 6 9.9569 -2.3070 0.0986 18 7 10.9576 -1.6155 0.5987 19 14 10.2490 -3.4698 -1.3338 20 1 10.0560 -2.7388 -2.6120 21 1 11.6360 -3.9963 -1.2693 22 1 9.2871 -4.5987 -1.2592 23 6 3.8770 -2.7025 0.6133 24 1 3.7406 -2.6679 1.6942 25 6 3.6598 -1.3172 -0.0011 26 1 -0.3633 0.0000 1.0276 27 1 -0.3633 0.8901 -0.5138 28 1 -0.3634 -0.8899 -0.5139 29 1 1.0104 -2.6792 0.9184 30 1 0.9194 -2.6368 -0.8663 31 1 1.7550 -5.3772 0.2593 32 1 2.4478 -4.6234 1.7223 33 1 3.8545 -6.5298 0.9978 34 1 4.0143 -5.8147 -0.6189 35 1 5.0717 -4.6859 1.9957 36 1 6.0241 -5.3485 0.6532 37 1 6.4314 -2.8187 1.7841 38 1 7.7595 -4.0325 0.1503 39 1 7.4168 -2.7109 -0.9917 40 1 11.8470 -1.7084 0.2230 41 1 4.1240 -0.5469 0.6147 42 1 4.0489 -1.2828 -1.0187 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575798261.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:28 Heat of formation + Delta-G solvation = -68.756507 kcal Electronic energy + Delta-G solvation = -20926.720909 eV Core-core repulsion = 17904.754386 eV Total energy + Delta-G solvation = -3021.966523 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.57338 -39.83627 -37.33397 -35.75832 -34.41839 -32.44512 -31.51570 -30.19954 -28.72919 -27.45179 -25.31488 -23.36880 -22.16977 -21.75321 -21.05433 -20.25169 -18.97756 -17.82244 -17.15885 -16.73057 -16.39790 -15.97636 -15.78942 -15.47734 -15.20209 -14.93164 -14.60849 -14.10624 -13.95048 -13.83295 -13.55675 -13.49969 -13.28628 -13.03431 -12.96586 -12.74691 -12.52966 -12.48985 -11.94875 -11.90622 -11.76287 -11.55459 -11.41839 -11.36194 -10.98070 -10.86962 -10.81151 -9.68501 -9.06017 -8.31874 -6.36527 1.32349 1.34264 1.44951 1.63081 2.00213 2.31878 3.02284 3.23091 3.48202 3.65029 3.79456 3.98130 4.12894 4.19979 4.28963 4.38723 4.47280 4.50476 4.55885 4.58321 4.59605 4.64193 4.72586 4.76807 4.85696 4.93094 5.01610 5.05027 5.05786 5.19043 5.20959 5.27308 5.31011 5.35903 5.38003 5.51587 5.57447 5.97022 6.56018 6.57528 6.66196 6.77188 7.15607 7.28612 8.85276 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020448 B = 0.005037 C = 0.004271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.001014 B = 5557.222142 C = 6553.690641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.508 3.492 3 O -0.613 6.613 4 N -0.625 5.625 5 C 0.112 3.888 6 C -0.098 4.098 7 H 0.083 0.917 8 C -0.092 4.092 9 C -0.110 4.110 10 C -0.144 4.144 11 C 0.098 3.902 12 H 0.068 0.932 13 N -0.686 5.686 14 C 0.180 3.820 15 C -0.529 4.529 16 H 0.033 0.967 17 C 0.006 3.994 18 N -0.949 5.949 19 Si 0.953 3.047 20 H -0.268 1.268 21 H -0.280 1.280 22 H -0.247 1.247 23 C -0.079 4.079 24 H 0.081 0.919 25 C 0.123 3.877 26 H 0.111 0.889 27 H 0.092 0.908 28 H 0.110 0.890 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.045 0.955 37 H 0.335 0.665 38 H -0.009 1.009 39 H 0.018 0.982 40 H 0.267 0.733 41 H 0.044 0.956 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.957 -11.241 -2.373 28.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.300 3.700 3 O -0.496 6.496 4 N -0.359 5.359 5 C -0.009 4.009 6 C -0.117 4.117 7 H 0.101 0.899 8 C -0.129 4.129 9 C -0.148 4.148 10 C -0.183 4.183 11 C -0.013 4.013 12 H 0.086 0.914 13 N -0.315 5.315 14 C 0.051 3.949 15 C -0.568 4.568 16 H 0.051 0.949 17 C -0.191 4.191 18 N -0.590 5.590 19 Si 0.776 3.224 20 H -0.194 1.194 21 H -0.205 1.205 22 H -0.170 1.170 23 C -0.099 4.099 24 H 0.099 0.901 25 C 0.000 4.000 26 H 0.130 0.870 27 H 0.111 0.889 28 H 0.129 0.871 29 H 0.113 0.887 30 H 0.119 0.881 31 H 0.115 0.885 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.064 0.936 37 H 0.153 0.847 38 H 0.009 0.991 39 H 0.036 0.964 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -25.645 -10.026 -2.766 27.674 hybrid contribution 1.622 -0.525 -0.032 1.705 sum -24.023 -10.551 -2.798 26.387 Atomic orbital electron populations 1.21890 0.87029 1.06264 1.06265 1.21572 0.92435 0.81407 0.74579 1.90717 1.72456 1.33061 1.53349 1.49471 1.07100 1.07099 1.72218 1.22013 0.95701 0.78870 1.04296 1.21921 0.93688 0.95315 1.00792 0.89871 1.21280 0.97654 0.93484 1.00521 1.21475 0.93119 0.98447 1.01724 1.22251 0.99229 0.96060 1.00783 1.21465 0.89773 0.91255 0.98784 0.91417 1.60520 1.04243 1.59308 1.07435 1.19693 0.87781 0.93348 0.94054 1.21381 0.93070 1.24781 1.17521 0.94859 1.25915 0.95518 0.97564 1.00089 1.70063 1.01333 1.43556 1.44035 0.85639 0.78000 0.79756 0.79053 1.19364 1.20529 1.17027 1.21903 0.95119 0.92714 1.00171 0.90065 1.21699 0.80460 0.98015 0.99815 0.87050 0.88936 0.87098 0.88677 0.88102 0.88541 0.90912 0.90535 0.91851 0.91914 0.93628 0.84691 0.99148 0.96390 0.92373 0.93707 0.92956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 9.91 71.23 0.71 -1.40 16 2 C 0.51 13.60 7.97 87.65 0.70 14.30 16 3 O -0.61 -24.04 17.39 -3.03 -0.05 -24.09 16 4 N -0.63 -15.04 3.38 -812.81 -2.75 -17.79 16 5 C 0.11 1.49 5.93 85.82 0.51 2.00 16 6 C -0.10 -1.54 2.31 -10.62 -0.02 -1.56 16 7 H 0.08 1.37 7.92 -2.39 -0.02 1.35 16 8 C -0.09 -1.07 5.71 30.37 0.17 -0.89 16 9 C -0.11 -1.75 5.83 30.72 0.18 -1.57 16 10 C -0.14 -3.50 5.15 30.71 0.16 -3.34 16 11 C 0.10 2.92 2.18 44.73 0.10 3.02 16 12 H 0.07 2.12 7.68 -2.38 -0.02 2.10 16 13 N -0.69 -27.84 6.20 -496.50 -3.08 -30.92 16 14 C 0.18 8.66 4.33 85.55 0.37 9.03 16 15 C -0.53 -31.51 9.87 25.60 0.25 -31.25 16 16 H 0.03 2.21 8.06 -2.91 -0.02 2.19 16 17 C 0.01 0.38 5.47 84.65 0.46 0.85 16 18 N -0.95 -60.83 13.96 21.45 0.30 -60.53 16 19 Si 0.95 44.75 27.47 68.60 1.88 46.63 16 20 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 21 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 22 H -0.25 -10.64 6.54 99.48 0.65 -9.99 16 23 C -0.08 -1.98 2.12 -10.32 -0.02 -2.00 16 24 H 0.08 2.06 8.06 -2.39 -0.02 2.04 16 25 C 0.12 3.80 6.49 85.99 0.56 4.36 16 26 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 28 H 0.11 0.76 7.04 -2.39 -0.02 0.75 16 29 H 0.10 0.86 8.08 -2.38 -0.02 0.84 16 30 H 0.10 0.81 7.72 -2.39 -0.02 0.79 16 31 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.07 0.83 8.06 -2.39 -0.02 0.81 16 33 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.06 1.50 8.08 -2.38 -0.02 1.48 16 36 H 0.04 1.28 7.55 -2.38 -0.02 1.26 16 37 H 0.34 13.51 8.45 -89.70 -0.76 12.75 16 38 H -0.01 -0.42 6.58 -2.39 -0.02 -0.44 16 39 H 0.02 0.88 7.49 -2.39 -0.02 0.86 16 40 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 41 H 0.04 1.73 8.07 -2.39 -0.02 1.71 16 42 H 0.05 1.75 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -79.06 328.44 0.60 -78.46 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: 0.18 Total: 16.72 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: 4.12 Total: -8.47 kcal Atomic # 7 Polarization: -103.72 SS G_CDS: -5.53 Total: -109.24 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.05 Total: -24.09 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.88 Total: 46.63 kcal Total: -79.06 0.60 -78.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575798261.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.705 kcal (2) G-P(sol) polarization free energy of solvation -79.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds