Wall clock time and date at job start Mon Mar 30 2020 00:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21280 * 119.99632 * 2 1 4 4 N 1.34772 * 120.00077 * 179.97438 * 2 1 3 5 5 C 1.47167 * 125.65135 * 359.97438 * 4 2 1 6 6 C 1.55347 * 106.96791 * 180.99532 * 5 4 2 7 7 H 1.09000 * 112.36743 * 215.22421 * 6 5 4 8 8 C 1.53005 * 106.41899 * 91.59872 * 6 5 4 9 9 C 1.52594 * 111.05198 * 197.20792 * 8 6 5 10 10 C 1.51917 * 108.63502 * 62.02807 * 9 8 6 11 11 C 1.52822 * 108.83121 * 296.45232 * 10 9 8 12 12 H 1.08992 * 108.96883 * 297.63647 * 11 10 9 13 13 N 1.46906 * 109.02261 * 178.76500 * 11 10 9 14 14 C 1.46898 * 110.99888 * 82.76380 * 13 11 10 15 15 C 1.50705 * 109.46661 * 180.02562 * 14 13 11 16 16 H 1.07998 * 120.00458 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99662 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99977 * 180.02562 * 17 15 14 19 19 Si 1.86808 * 120.00066 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.47237 * 90.00089 * 19 17 15 21 21 H 1.48504 * 109.46698 * 210.00151 * 19 17 15 22 22 H 1.48502 * 109.46787 * 330.00064 * 19 17 15 23 23 C 1.50730 * 111.74422 * 58.18629 * 11 10 9 24 24 H 1.09003 * 109.26788 * 186.94022 * 23 11 10 25 25 C 1.47291 * 125.95008 * 180.72040 * 4 2 1 26 26 H 1.08997 * 109.47097 * 270.00148 * 1 2 3 27 27 H 1.08997 * 109.46853 * 29.99976 * 1 2 3 28 28 H 1.08995 * 109.46844 * 149.99993 * 1 2 3 29 29 H 1.09001 * 109.96517 * 61.61513 * 5 4 2 30 30 H 1.09006 * 109.96143 * 300.36955 * 5 4 2 31 31 H 1.08999 * 109.16302 * 317.61125 * 8 6 5 32 32 H 1.09001 * 109.16067 * 76.80629 * 8 6 5 33 33 H 1.08997 * 109.67515 * 182.08433 * 9 8 6 34 34 H 1.08996 * 109.67613 * 302.62954 * 9 8 6 35 35 H 1.09000 * 109.97027 * 176.21068 * 10 9 8 36 36 H 1.09001 * 108.76223 * 55.97684 * 10 9 8 37 37 H 1.00902 * 110.99923 * 206.72321 * 13 11 10 38 38 H 1.08995 * 109.47296 * 299.99911 * 14 13 11 39 39 H 1.08997 * 109.47334 * 60.00212 * 14 13 11 40 40 H 0.96997 * 119.99893 * 180.02562 * 18 17 15 41 41 H 1.08991 * 110.84860 * 84.75306 * 25 4 2 42 42 H 1.08996 * 109.92701 * 322.20317 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.5742 -2.5079 0.0017 6 6 2.7408 -3.5334 0.0277 7 1 2.5177 -4.4303 -0.5502 8 6 3.0159 -3.8382 1.5016 9 6 4.3852 -4.4873 1.6809 10 6 5.4503 -3.5114 1.2108 11 6 5.2615 -3.2577 -0.2844 12 1 5.4003 -4.1950 -0.8230 13 7 6.2712 -2.2915 -0.7374 14 6 7.5488 -2.9589 -1.0204 15 6 8.5575 -1.9382 -1.4807 16 1 8.2774 -0.8979 -1.5560 17 6 9.8378 -2.3327 -1.8068 18 7 10.7182 -1.4419 -2.2081 19 14 10.3222 -4.1322 -1.6774 20 1 10.0502 -4.8123 -2.9692 21 1 11.7693 -4.2336 -1.3597 22 1 9.5322 -4.7812 -0.6003 23 6 3.8893 -2.7139 -0.5896 24 1 3.7541 -2.6645 -1.6701 25 6 3.6458 -1.3199 0.0156 26 1 -0.3633 0.0000 1.0276 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 0.9767 -2.6468 -0.8994 30 1 0.9492 -2.6328 0.8860 31 1 2.9829 -2.9095 2.0712 32 1 2.2476 -4.5144 1.8766 33 1 4.5424 -4.7281 2.7322 34 1 4.4412 -5.3970 1.0831 35 1 6.4417 -3.9269 1.3914 36 1 5.3365 -2.5768 1.7601 37 1 5.9450 -1.7784 -1.5426 38 1 7.9125 -3.4462 -0.1157 39 1 7.4038 -3.7050 -1.8016 40 1 11.6187 -1.7195 -2.4379 41 1 4.0302 -1.2734 1.0344 42 1 4.1060 -0.5494 -0.6030 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575798268.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:34 Heat of formation + Delta-G solvation = -43.572534 kcal Electronic energy + Delta-G solvation = -21099.355427 eV Core-core repulsion = 18078.480962 eV Total energy + Delta-G solvation = -3020.874464 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.80873 -38.72595 -35.97881 -34.31604 -32.46799 -31.44055 -30.35649 -29.44541 -27.17758 -26.15458 -24.17444 -22.11155 -21.83658 -20.54974 -19.33329 -18.67877 -17.08604 -16.79818 -16.23007 -15.54612 -15.07321 -14.76483 -14.47905 -14.18373 -14.13529 -13.73223 -13.34519 -13.00726 -12.73971 -12.60675 -12.48471 -12.29847 -12.10667 -12.00343 -11.70386 -11.50415 -11.31273 -11.10809 -10.80004 -10.65803 -10.34632 -10.08452 -9.91926 -9.87308 -9.72000 -9.24416 -8.64935 -8.59049 -7.50759 -6.04768 -4.02695 2.60007 2.96848 3.27696 3.35516 3.37513 4.24329 4.30855 4.42022 4.55348 4.65632 4.96368 5.02177 5.11279 5.12726 5.16979 5.21195 5.27836 5.30738 5.40263 5.46813 5.50335 5.58308 5.62446 5.66494 5.79317 5.96629 6.03519 6.09297 6.12968 6.20331 6.27667 6.38261 6.48183 6.65283 6.79860 7.00707 7.49506 7.62354 7.89286 8.13550 8.31333 8.65640 9.04335 9.56950 11.08654 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.024650 B = 0.004882 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.637791 B = 5734.547553 C = 6575.065023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.522 3.478 3 O -0.545 6.545 4 N -0.621 5.621 5 C 0.101 3.899 6 C -0.090 4.090 7 H 0.096 0.904 8 C -0.112 4.112 9 C -0.119 4.119 10 C -0.109 4.109 11 C 0.100 3.900 12 H 0.038 0.962 13 N -0.676 5.676 14 C 0.165 3.835 15 C -0.515 4.515 16 H 0.079 0.921 17 C 0.068 3.932 18 N -0.900 5.900 19 Si 0.877 3.123 20 H -0.278 1.278 21 H -0.286 1.286 22 H -0.267 1.267 23 C -0.094 4.094 24 H 0.074 0.926 25 C 0.121 3.879 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.335 0.665 38 H 0.027 0.973 39 H -0.022 1.022 40 H 0.263 0.737 41 H 0.076 0.924 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.029 -7.354 6.168 24.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.311 3.689 3 O -0.422 6.422 4 N -0.356 5.356 5 C -0.022 4.022 6 C -0.110 4.110 7 H 0.114 0.886 8 C -0.149 4.149 9 C -0.157 4.157 10 C -0.147 4.147 11 C -0.011 4.011 12 H 0.055 0.945 13 N -0.306 5.306 14 C 0.038 3.962 15 C -0.554 4.554 16 H 0.097 0.903 17 C -0.133 4.133 18 N -0.539 5.539 19 Si 0.705 3.295 20 H -0.204 1.204 21 H -0.212 1.212 22 H -0.192 1.192 23 C -0.113 4.113 24 H 0.093 0.907 25 C -0.001 4.001 26 H 0.109 0.891 27 H 0.110 0.890 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.153 0.847 38 H 0.045 0.955 39 H -0.004 1.004 40 H 0.073 0.927 41 H 0.094 0.906 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -21.375 -6.481 6.734 23.329 hybrid contribution 0.194 -1.500 -0.885 1.752 sum -21.180 -7.981 5.849 23.378 Atomic orbital electron populations 1.21878 0.91810 1.04639 1.04486 1.20444 0.90213 0.82188 0.76067 1.90755 1.70736 1.30608 1.50100 1.48631 1.08247 1.05485 1.73245 1.22412 0.96170 0.82245 1.01372 1.22251 0.93999 0.97349 0.97360 0.88581 1.21560 0.97545 1.00938 0.94867 1.21291 0.94665 0.98818 1.00936 1.21345 0.98482 0.99355 0.95511 1.20814 0.89536 0.94628 0.96136 0.94459 1.60584 1.03265 1.26290 1.40480 1.20042 0.87440 0.94199 0.94544 1.21077 0.94642 0.95871 1.43788 0.90275 1.24912 0.96389 0.97245 0.94790 1.69906 1.04768 1.33596 1.45638 0.86831 0.77874 0.86032 0.78775 1.20422 1.21180 1.19168 1.21629 0.94855 0.94674 1.00160 0.90740 1.22008 0.78974 0.97059 1.02065 0.89056 0.89011 0.90389 0.91591 0.91228 0.91708 0.92103 0.91882 0.92154 0.91480 0.91318 0.84695 0.95468 1.00430 0.92672 0.90620 0.89850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 9.90 36.01 0.36 -1.00 16 2 C 0.52 6.91 7.96 -10.98 -0.09 6.83 16 3 O -0.54 -9.94 17.37 5.56 0.10 -9.84 16 4 N -0.62 -7.52 3.33 -170.49 -0.57 -8.09 16 5 C 0.10 0.86 5.41 -2.43 -0.01 0.84 16 6 C -0.09 -0.84 3.61 -88.85 -0.32 -1.16 16 7 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 8 C -0.11 -1.03 4.61 -26.94 -0.12 -1.15 16 9 C -0.12 -1.29 5.88 -27.49 -0.16 -1.45 16 10 C -0.11 -1.57 5.16 -27.37 -0.14 -1.71 16 11 C 0.10 1.54 2.23 -68.94 -0.15 1.39 16 12 H 0.04 0.60 7.79 -51.93 -0.40 0.19 16 13 N -0.68 -13.45 5.86 -109.30 -0.64 -14.09 16 14 C 0.17 3.95 4.29 -4.97 -0.02 3.93 16 15 C -0.52 -14.78 9.87 -34.44 -0.34 -15.12 16 16 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 17 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 18 N -0.90 -27.91 13.96 55.43 0.77 -27.14 16 19 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 23 C -0.09 -1.18 2.21 -90.76 -0.20 -1.38 16 24 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 25 C 0.12 1.71 5.33 -3.13 -0.02 1.70 16 26 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.08 0.46 7.13 -51.93 -0.37 0.09 16 29 H 0.07 0.46 7.86 -51.93 -0.41 0.05 16 30 H 0.07 0.48 7.74 -51.93 -0.40 0.07 16 31 H 0.06 0.66 7.08 -51.93 -0.37 0.29 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 1.09 7.31 -51.93 -0.38 0.71 16 36 H 0.07 1.04 6.79 -51.93 -0.35 0.68 16 37 H 0.34 6.63 8.27 -39.29 -0.32 6.30 16 38 H 0.03 0.67 6.33 -51.93 -0.33 0.34 16 39 H -0.02 -0.52 7.47 -51.93 -0.39 -0.91 16 40 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 41 H 0.08 1.14 6.07 -51.93 -0.32 0.83 16 42 H 0.08 1.40 8.04 -51.93 -0.42 0.98 16 LS Contribution 321.92 15.07 4.85 4.85 Total: -1.00 -33.35 321.92 -8.48 -41.83 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -7.01 Total: 1.95 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: -1.32 Total: -6.39 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: -0.43 Total: -49.32 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.10 Total: -9.84 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.35 -8.48 -41.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575798268.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.739 kcal (2) G-P(sol) polarization free energy of solvation -33.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds