Wall clock time and date at job start Mon Mar 30 2020 00:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21280 * 119.99632 * 2 1 4 4 N 1.34772 * 120.00077 * 179.97438 * 2 1 3 5 5 C 1.47167 * 125.65135 * 359.97438 * 4 2 1 6 6 C 1.55347 * 106.96791 * 180.99532 * 5 4 2 7 7 H 1.09000 * 112.36743 * 215.22421 * 6 5 4 8 8 C 1.53005 * 106.41899 * 91.59872 * 6 5 4 9 9 C 1.52594 * 111.05198 * 197.20792 * 8 6 5 10 10 C 1.51917 * 108.63502 * 62.02807 * 9 8 6 11 11 C 1.52822 * 108.83121 * 296.45232 * 10 9 8 12 12 H 1.08992 * 108.96883 * 297.63647 * 11 10 9 13 13 N 1.46906 * 109.02261 * 178.76500 * 11 10 9 14 14 C 1.46898 * 110.99888 * 82.76380 * 13 11 10 15 15 C 1.50705 * 109.46661 * 180.02562 * 14 13 11 16 16 H 1.07998 * 120.00458 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99662 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99977 * 180.02562 * 17 15 14 19 19 Si 1.86808 * 120.00066 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.47237 * 90.00089 * 19 17 15 21 21 H 1.48504 * 109.46698 * 210.00151 * 19 17 15 22 22 H 1.48502 * 109.46787 * 330.00064 * 19 17 15 23 23 C 1.50730 * 111.74422 * 58.18629 * 11 10 9 24 24 H 1.09003 * 109.26788 * 186.94022 * 23 11 10 25 25 C 1.47291 * 125.95008 * 180.72040 * 4 2 1 26 26 H 1.08997 * 109.47097 * 270.00148 * 1 2 3 27 27 H 1.08997 * 109.46853 * 29.99976 * 1 2 3 28 28 H 1.08995 * 109.46844 * 149.99993 * 1 2 3 29 29 H 1.09001 * 109.96517 * 61.61513 * 5 4 2 30 30 H 1.09006 * 109.96143 * 300.36955 * 5 4 2 31 31 H 1.08999 * 109.16302 * 317.61125 * 8 6 5 32 32 H 1.09001 * 109.16067 * 76.80629 * 8 6 5 33 33 H 1.08997 * 109.67515 * 182.08433 * 9 8 6 34 34 H 1.08996 * 109.67613 * 302.62954 * 9 8 6 35 35 H 1.09000 * 109.97027 * 176.21068 * 10 9 8 36 36 H 1.09001 * 108.76223 * 55.97684 * 10 9 8 37 37 H 1.00902 * 110.99923 * 206.72321 * 13 11 10 38 38 H 1.08995 * 109.47296 * 299.99911 * 14 13 11 39 39 H 1.08997 * 109.47334 * 60.00212 * 14 13 11 40 40 H 0.96997 * 119.99893 * 180.02562 * 18 17 15 41 41 H 1.08991 * 110.84860 * 84.75306 * 25 4 2 42 42 H 1.08996 * 109.92701 * 322.20317 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.5742 -2.5079 0.0017 6 6 2.7408 -3.5334 0.0277 7 1 2.5177 -4.4303 -0.5502 8 6 3.0159 -3.8382 1.5016 9 6 4.3852 -4.4873 1.6809 10 6 5.4503 -3.5114 1.2108 11 6 5.2615 -3.2577 -0.2844 12 1 5.4003 -4.1950 -0.8230 13 7 6.2712 -2.2915 -0.7374 14 6 7.5488 -2.9589 -1.0204 15 6 8.5575 -1.9382 -1.4807 16 1 8.2774 -0.8979 -1.5560 17 6 9.8378 -2.3327 -1.8068 18 7 10.7182 -1.4419 -2.2081 19 14 10.3222 -4.1322 -1.6774 20 1 10.0502 -4.8123 -2.9692 21 1 11.7693 -4.2336 -1.3597 22 1 9.5322 -4.7812 -0.6003 23 6 3.8893 -2.7139 -0.5896 24 1 3.7541 -2.6645 -1.6701 25 6 3.6458 -1.3199 0.0156 26 1 -0.3633 0.0000 1.0276 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 0.9767 -2.6468 -0.8994 30 1 0.9492 -2.6328 0.8860 31 1 2.9829 -2.9095 2.0712 32 1 2.2476 -4.5144 1.8766 33 1 4.5424 -4.7281 2.7322 34 1 4.4412 -5.3970 1.0831 35 1 6.4417 -3.9269 1.3914 36 1 5.3365 -2.5768 1.7601 37 1 5.9450 -1.7784 -1.5426 38 1 7.9125 -3.4462 -0.1157 39 1 7.4038 -3.7050 -1.8016 40 1 11.6187 -1.7195 -2.4379 41 1 4.0302 -1.2734 1.0344 42 1 4.1060 -0.5494 -0.6030 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575798268.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:34 Heat of formation + Delta-G solvation = -68.213039 kcal Electronic energy + Delta-G solvation = -21100.423919 eV Core-core repulsion = 18078.480962 eV Total energy + Delta-G solvation = -3021.942957 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.79727 -39.83175 -37.30918 -35.64863 -34.43097 -32.44993 -31.63041 -30.40956 -28.56962 -27.47693 -25.25960 -23.53362 -23.06171 -21.84546 -20.28570 -19.79714 -18.89857 -18.00589 -17.32894 -16.60455 -16.50002 -16.15652 -15.92642 -15.48658 -15.05626 -15.03679 -14.54445 -14.33381 -14.06329 -13.74673 -13.69488 -13.50228 -13.22977 -12.97321 -12.78201 -12.69073 -12.53393 -12.42630 -12.22119 -12.01883 -11.82733 -11.50672 -11.32632 -11.07836 -10.99640 -10.88065 -10.82412 -9.65198 -9.13938 -8.31713 -6.36750 1.32289 1.35377 1.46696 1.60883 2.04852 2.32493 3.02098 3.20471 3.45247 3.66007 3.69208 3.99482 4.16808 4.20348 4.24758 4.35599 4.42134 4.47949 4.51432 4.59546 4.63372 4.72784 4.75144 4.76746 4.85884 4.89360 5.00569 5.03209 5.05114 5.15983 5.23552 5.27832 5.33408 5.38301 5.39728 5.53096 5.61924 5.97207 6.54168 6.57065 6.65691 6.75119 7.14533 7.28373 8.85583 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.024650 B = 0.004882 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.637791 B = 5734.547553 C = 6575.065023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.509 3.491 3 O -0.612 6.612 4 N -0.620 5.620 5 C 0.099 3.901 6 C -0.081 4.081 7 H 0.126 0.874 8 C -0.108 4.108 9 C -0.112 4.112 10 C -0.109 4.109 11 C 0.100 3.900 12 H 0.042 0.958 13 N -0.689 5.689 14 C 0.180 3.820 15 C -0.530 4.530 16 H 0.031 0.969 17 C 0.006 3.994 18 N -0.950 5.950 19 Si 0.955 3.045 20 H -0.264 1.264 21 H -0.281 1.281 22 H -0.248 1.248 23 C -0.088 4.088 24 H 0.073 0.927 25 C 0.123 3.877 26 H 0.113 0.887 27 H 0.091 0.909 28 H 0.109 0.891 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.051 0.949 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.044 0.956 36 H 0.052 0.948 37 H 0.331 0.669 38 H 0.026 0.974 39 H -0.014 1.014 40 H 0.268 0.732 41 H 0.060 0.940 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.188 -11.198 6.852 28.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.301 3.699 3 O -0.494 6.494 4 N -0.353 5.353 5 C -0.023 4.023 6 C -0.100 4.100 7 H 0.143 0.857 8 C -0.145 4.145 9 C -0.150 4.150 10 C -0.147 4.147 11 C -0.009 4.009 12 H 0.060 0.940 13 N -0.319 5.319 14 C 0.051 3.949 15 C -0.569 4.569 16 H 0.049 0.951 17 C -0.192 4.192 18 N -0.590 5.590 19 Si 0.778 3.222 20 H -0.189 1.189 21 H -0.207 1.207 22 H -0.171 1.171 23 C -0.108 4.108 24 H 0.091 0.909 25 C 0.000 4.000 26 H 0.131 0.869 27 H 0.110 0.890 28 H 0.128 0.872 29 H 0.111 0.889 30 H 0.118 0.882 31 H 0.069 0.931 32 H 0.114 0.886 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.149 0.851 38 H 0.044 0.956 39 H 0.003 0.997 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -24.587 -10.367 7.430 27.699 hybrid contribution 1.193 -0.182 -1.089 1.626 sum -23.394 -10.549 6.341 26.434 Atomic orbital electron populations 1.21890 0.87059 1.06221 1.06313 1.21549 0.92405 0.81364 0.74620 1.90723 1.72432 1.33033 1.53203 1.48761 1.07212 1.07157 1.72190 1.22720 0.96032 0.79329 1.04177 1.22336 0.92115 0.98039 0.97482 0.85655 1.21566 0.97385 1.00959 0.94640 1.21256 0.94091 0.98015 1.01651 1.21334 0.98994 0.99739 0.94615 1.20939 0.89748 0.93632 0.96629 0.93976 1.60493 1.03479 1.27719 1.40246 1.19743 0.88078 0.92878 0.94184 1.21378 0.96417 0.94925 1.44140 0.95112 1.25948 0.96129 1.03019 0.94067 1.70075 1.05438 1.36531 1.46998 0.85602 0.77723 0.79057 0.79830 1.18928 1.20659 1.17141 1.21514 0.94690 0.94315 1.00253 0.90862 1.21747 0.80845 0.97029 1.00367 0.86884 0.89015 0.87204 0.88874 0.88231 0.93055 0.88602 0.90779 0.90983 0.93726 0.92955 0.85136 0.95558 0.99665 0.92357 0.92186 0.94044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.90 71.24 0.71 -1.33 16 2 C 0.51 13.22 7.96 87.66 0.70 13.92 16 3 O -0.61 -23.52 17.37 -3.03 -0.05 -23.57 16 4 N -0.62 -14.25 3.33 -811.69 -2.70 -16.95 16 5 C 0.10 1.23 5.41 87.06 0.47 1.70 16 6 C -0.08 -1.16 3.61 -9.65 -0.03 -1.20 16 7 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 8 C -0.11 -1.54 4.61 30.46 0.14 -1.40 16 9 C -0.11 -2.08 5.88 30.10 0.18 -1.90 16 10 C -0.11 -3.08 5.16 30.18 0.16 -2.92 16 11 C 0.10 3.06 2.23 44.12 0.10 3.16 16 12 H 0.04 1.27 7.79 -2.39 -0.02 1.25 16 13 N -0.69 -28.59 5.86 -499.73 -2.93 -31.52 16 14 C 0.18 8.72 4.29 85.56 0.37 9.09 16 15 C -0.53 -31.83 9.87 25.60 0.25 -31.57 16 16 H 0.03 2.07 8.06 -2.91 -0.02 2.05 16 17 C 0.01 0.33 5.47 84.65 0.46 0.80 16 18 N -0.95 -61.06 13.96 21.45 0.30 -60.76 16 19 Si 0.96 44.65 27.47 68.60 1.88 46.54 16 20 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 21 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 22 H -0.25 -10.74 6.54 99.48 0.65 -10.08 16 23 C -0.09 -2.13 2.21 -10.88 -0.02 -2.16 16 24 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 25 C 0.12 3.63 5.33 86.54 0.46 4.09 16 26 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.11 0.74 7.13 -2.39 -0.02 0.72 16 29 H 0.09 0.76 7.86 -2.39 -0.02 0.74 16 30 H 0.10 0.76 7.74 -2.38 -0.02 0.74 16 31 H 0.05 0.90 7.08 -2.39 -0.02 0.88 16 32 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.04 1.44 7.31 -2.39 -0.02 1.42 16 36 H 0.05 1.63 6.79 -2.39 -0.02 1.61 16 37 H 0.33 13.99 8.27 -89.69 -0.74 13.24 16 38 H 0.03 1.29 6.33 -2.39 -0.02 1.27 16 39 H -0.01 -0.67 7.47 -2.39 -0.02 -0.68 16 40 H 0.27 15.94 8.31 -92.71 -0.77 15.16 16 41 H 0.06 1.93 6.07 -2.39 -0.01 1.91 16 42 H 0.04 1.54 8.04 -2.39 -0.02 1.52 16 Total: -1.00 -79.64 321.92 0.64 -79.00 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: 0.20 Total: 17.00 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: 3.93 Total: -9.73 kcal Atomic # 7 Polarization: -103.90 SS G_CDS: -5.33 Total: -109.23 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.05 Total: -23.57 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.88 Total: 46.54 kcal Total: -79.64 0.64 -79.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575798268.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.784 kcal (2) G-P(sol) polarization free energy of solvation -79.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds