Wall clock time and date at job start Mon Mar 30 2020 00:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.21290 * 119.99801 * 2 1 4 4 N 1.34775 * 120.00540 * 180.02562 * 2 1 3 5 5 C 1.48815 * 128.08627 * 359.97438 * 4 2 1 6 6 C 1.53889 * 102.73801 * 137.69035 * 5 4 2 7 7 H 1.08998 * 105.22407 * 278.36180 * 6 5 4 8 8 C 1.49285 * 113.51735 * 163.84078 * 6 5 4 9 9 C 1.52526 * 113.39892 * 263.21917 * 8 6 5 10 10 C 1.53489 * 107.47215 * 305.61776 * 9 8 6 11 11 C 1.51612 * 107.50646 * 69.13946 * 10 9 8 12 12 H 1.08998 * 108.99136 * 62.01215 * 11 10 9 13 13 N 1.46900 * 108.21449 * 179.97438 * 11 10 9 14 14 C 1.46895 * 111.00386 * 278.51297 * 13 11 10 15 15 C 1.50700 * 109.47286 * 180.02562 * 14 13 11 16 16 H 1.08000 * 119.99926 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00135 * 180.02562 * 15 14 13 18 18 N 1.31523 * 120.00122 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00312 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.46856 * 59.99620 * 19 17 15 21 21 H 1.48496 * 109.47100 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.46553 * 299.99975 * 19 17 15 23 23 C 1.51352 * 106.15836 * 30.06127 * 6 5 4 24 24 H 1.08999 * 109.61651 * 235.81852 * 23 6 5 25 25 C 1.48257 * 128.09821 * 179.97438 * 4 2 1 26 26 H 1.09002 * 109.47152 * 270.00101 * 1 2 3 27 27 H 1.09001 * 109.47702 * 30.00040 * 1 2 3 28 28 H 1.09001 * 109.47460 * 150.00111 * 1 2 3 29 29 H 1.09000 * 110.76075 * 19.37376 * 5 4 2 30 30 H 1.09006 * 110.91319 * 256.06850 * 5 4 2 31 31 H 1.09005 * 108.69503 * 24.22516 * 8 6 5 32 32 H 1.09002 * 108.70008 * 142.32996 * 8 6 5 33 33 H 1.08995 * 109.86042 * 65.11397 * 9 8 6 34 34 H 1.09004 * 109.85570 * 186.06196 * 9 8 6 35 35 H 1.08997 * 109.77377 * 188.60112 * 10 9 8 36 36 H 1.08998 * 109.76939 * 309.33822 * 10 9 8 37 37 H 1.00903 * 110.99928 * 42.47263 * 13 11 10 38 38 H 1.08998 * 109.47335 * 300.00050 * 14 13 11 39 39 H 1.09007 * 109.46949 * 60.00261 * 14 13 11 40 40 H 0.97000 * 120.00068 * 180.02562 * 18 17 15 41 41 H 1.09005 * 110.35485 * 99.62718 * 25 4 2 42 42 H 1.08995 * 110.35749 * 337.33618 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 1.6256 -2.5478 -0.0006 6 6 2.5285 -3.2766 -1.0115 7 1 2.1251 -3.0215 -1.9914 8 6 2.4387 -4.7643 -0.9261 9 6 3.5458 -5.3906 -0.0844 10 6 4.8867 -4.9024 -0.6498 11 6 5.0005 -3.4226 -0.3402 12 1 5.0007 -3.2854 0.7411 13 7 6.2805 -2.9388 -0.8748 14 6 7.3845 -3.2450 0.0446 15 6 8.6780 -2.7342 -0.5359 16 1 8.6797 -2.2320 -1.4920 17 6 9.8592 -2.9081 0.1536 18 7 9.8573 -3.5202 1.3177 19 14 11.4626 -2.2744 -0.5656 20 1 11.3722 -0.8046 -0.7576 21 1 12.5787 -2.5851 0.3632 22 1 11.7112 -2.9302 -1.8746 23 6 3.8788 -2.5970 -0.9367 24 1 4.1684 -2.2482 -1.9279 25 6 3.6487 -1.3758 -0.0011 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8900 -0.5138 28 1 -0.3634 -0.8900 -0.5138 29 1 0.5893 -2.5474 -0.3383 30 1 1.7083 -3.0005 0.9876 31 1 1.4755 -5.0317 -0.4913 32 1 2.4929 -5.1761 -1.9338 33 1 3.4450 -5.0751 0.9540 34 1 3.4896 -6.4773 -0.1482 35 1 5.7056 -5.4438 -0.1761 36 1 4.9129 -5.0635 -1.7275 37 1 6.4569 -3.3210 -1.7918 38 1 7.2021 -2.7626 1.0049 39 1 7.4504 -4.3238 0.1866 40 1 10.6883 -3.6422 1.8029 41 1 4.0004 -1.5986 1.0063 42 1 4.1567 -0.4955 -0.3949 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575798269.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:37 Heat of formation + Delta-G solvation = -41.779300 kcal Electronic energy + Delta-G solvation = -20932.251102 eV Core-core repulsion = 17911.454398 eV Total energy + Delta-G solvation = -3020.796704 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.50856 -38.65984 -35.96989 -34.34540 -32.55488 -31.41662 -30.10229 -29.26595 -26.93886 -25.78416 -24.26532 -22.19724 -21.55944 -21.12735 -19.27976 -18.40653 -17.03502 -16.62388 -15.88474 -15.54807 -15.07452 -14.68348 -14.53588 -14.09695 -13.72884 -13.50050 -13.44992 -13.05806 -12.70688 -12.62519 -12.40723 -12.10089 -12.06071 -11.62322 -11.47331 -11.21074 -11.06209 -10.85537 -10.76848 -10.73167 -10.34833 -10.23175 -9.95115 -9.84022 -9.67317 -9.16164 -8.71751 -8.46206 -7.24245 -6.01932 -4.03598 2.63923 2.97097 3.34940 3.38799 3.42302 4.39146 4.43096 4.49179 4.56038 4.80414 4.97178 5.03742 5.14616 5.17054 5.25321 5.33997 5.34618 5.36927 5.47204 5.58548 5.61025 5.70051 5.71834 5.81952 5.94290 6.02428 6.09499 6.16553 6.19379 6.27835 6.34177 6.44450 6.58922 6.67386 7.26912 7.44877 7.59428 7.80100 8.14405 8.17029 8.40423 8.62705 9.05551 9.61383 11.08995 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.021504 B = 0.004692 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.752859 B = 5966.270413 C = 6943.869134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.528 3.472 3 O -0.549 6.549 4 N -0.628 5.628 5 C 0.106 3.894 6 C -0.093 4.093 7 H 0.058 0.942 8 C -0.100 4.100 9 C -0.116 4.116 10 C -0.146 4.146 11 C 0.095 3.905 12 H 0.071 0.929 13 N -0.689 5.689 14 C 0.196 3.804 15 C -0.514 4.514 16 H 0.061 0.939 17 C 0.057 3.943 18 N -0.899 5.899 19 Si 0.898 3.102 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.072 4.072 24 H 0.084 0.916 25 C 0.114 3.886 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.329 0.671 38 H 0.026 0.974 39 H -0.012 1.012 40 H 0.261 0.739 41 H 0.072 0.928 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.381 -3.169 -3.064 20.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.317 3.683 3 O -0.427 6.427 4 N -0.363 5.363 5 C -0.017 4.017 6 C -0.113 4.113 7 H 0.077 0.923 8 C -0.138 4.138 9 C -0.154 4.154 10 C -0.185 4.185 11 C -0.016 4.016 12 H 0.089 0.911 13 N -0.318 5.318 14 C 0.069 3.931 15 C -0.553 4.553 16 H 0.079 0.921 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.726 3.274 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.092 4.092 24 H 0.102 0.898 25 C -0.008 4.008 26 H 0.110 0.890 27 H 0.110 0.890 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.146 0.854 38 H 0.044 0.956 39 H 0.006 0.994 40 H 0.071 0.929 41 H 0.091 0.909 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -20.075 -1.854 -2.677 20.337 hybrid contribution 1.044 -0.751 -0.396 1.345 sum -19.031 -2.605 -3.073 19.453 Atomic orbital electron populations 1.21873 0.91823 1.04572 1.04538 1.20389 0.90098 0.81976 0.75828 1.90745 1.70754 1.30568 1.50598 1.49311 1.08816 1.05404 1.72754 1.22643 0.97594 0.81447 1.00032 1.20579 0.96027 0.95178 0.99480 0.92310 1.20559 0.99093 0.93398 1.00715 1.21531 0.94987 0.99469 0.99435 1.22141 0.97396 0.98065 1.00920 1.21007 0.90638 0.90740 0.99214 0.91101 1.60802 1.01751 1.62946 1.06277 1.19549 0.87438 0.94148 0.91926 1.21162 0.91377 1.37055 1.05706 0.92086 1.24973 0.99234 0.95335 0.94940 1.69951 1.27378 1.42717 1.13763 0.86564 0.82664 0.79466 0.78725 1.20150 1.21371 1.20310 1.21262 0.92918 0.94754 1.00248 0.89805 1.22844 0.79088 0.99057 0.99813 0.89022 0.89026 0.90347 0.90278 0.90727 0.92038 0.91963 0.91845 0.92154 0.91240 0.92021 0.85446 0.95621 0.99450 0.92902 0.90944 0.89677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.41 9.96 36.00 0.36 -1.06 16 2 C 0.53 7.28 8.03 -10.99 -0.09 7.19 16 3 O -0.55 -10.26 17.40 5.55 0.10 -10.17 16 4 N -0.63 -8.13 3.32 -168.24 -0.56 -8.69 16 5 C 0.11 0.99 6.29 -2.30 -0.01 0.98 16 6 C -0.09 -0.96 2.55 -92.82 -0.24 -1.20 16 7 H 0.06 0.59 8.03 -51.93 -0.42 0.18 16 8 C -0.10 -0.91 5.38 -28.80 -0.15 -1.07 16 9 C -0.12 -1.28 6.06 -26.72 -0.16 -1.44 16 10 C -0.15 -2.09 5.12 -27.18 -0.14 -2.23 16 11 C 0.10 1.54 1.92 -69.17 -0.13 1.40 16 12 H 0.07 1.25 6.75 -51.93 -0.35 0.90 16 13 N -0.69 -14.05 6.07 -109.55 -0.67 -14.72 16 14 C 0.20 5.01 5.20 -4.98 -0.03 4.98 16 15 C -0.51 -14.51 9.32 -34.44 -0.32 -14.83 16 16 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -26.81 13.29 55.43 0.74 -26.08 16 19 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 C -0.07 -0.99 2.95 -90.85 -0.27 -1.26 16 24 H 0.08 1.25 8.00 -51.93 -0.42 0.84 16 25 C 0.11 1.74 6.54 -1.72 -0.01 1.72 16 26 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.08 0.48 6.55 -51.93 -0.34 0.14 16 29 H 0.08 0.53 6.54 -51.93 -0.34 0.19 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.45 7.83 -51.93 -0.41 0.04 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.07 1.15 7.14 -51.93 -0.37 0.78 16 36 H 0.06 0.85 8.07 -51.93 -0.42 0.43 16 37 H 0.33 6.49 8.46 -39.29 -0.33 6.15 16 38 H 0.03 0.72 8.04 -51.93 -0.42 0.30 16 39 H -0.01 -0.33 7.12 -51.92 -0.37 -0.70 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.07 1.15 7.17 -51.93 -0.37 0.78 16 42 H 0.08 1.52 7.91 -51.93 -0.41 1.11 16 LS Contribution 328.26 15.07 4.95 4.95 Total: -1.00 -32.52 328.26 -8.80 -41.32 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -7.04 Total: 1.84 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -1.29 Total: -5.28 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: -0.49 Total: -49.49 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.10 Total: -10.17 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.52 -8.80 -41.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575798269.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.462 kcal (2) G-P(sol) polarization free energy of solvation -32.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds