Wall clock time and date at job start Mon Mar 30 2020 00:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.21290 * 119.99801 * 2 1 4 4 N 1.34775 * 120.00540 * 180.02562 * 2 1 3 5 5 C 1.48815 * 128.08627 * 359.97438 * 4 2 1 6 6 C 1.53889 * 102.73801 * 137.69035 * 5 4 2 7 7 H 1.08998 * 105.22407 * 278.36180 * 6 5 4 8 8 C 1.49285 * 113.51735 * 163.84078 * 6 5 4 9 9 C 1.52526 * 113.39892 * 263.21917 * 8 6 5 10 10 C 1.53489 * 107.47215 * 305.61776 * 9 8 6 11 11 C 1.51612 * 107.50646 * 69.13946 * 10 9 8 12 12 H 1.08998 * 108.99136 * 62.01215 * 11 10 9 13 13 N 1.46900 * 108.21449 * 179.97438 * 11 10 9 14 14 C 1.46895 * 111.00386 * 278.51297 * 13 11 10 15 15 C 1.50700 * 109.47286 * 180.02562 * 14 13 11 16 16 H 1.08000 * 119.99926 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00135 * 180.02562 * 15 14 13 18 18 N 1.31523 * 120.00122 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00312 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.46856 * 59.99620 * 19 17 15 21 21 H 1.48496 * 109.47100 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.46553 * 299.99975 * 19 17 15 23 23 C 1.51352 * 106.15836 * 30.06127 * 6 5 4 24 24 H 1.08999 * 109.61651 * 235.81852 * 23 6 5 25 25 C 1.48257 * 128.09821 * 179.97438 * 4 2 1 26 26 H 1.09002 * 109.47152 * 270.00101 * 1 2 3 27 27 H 1.09001 * 109.47702 * 30.00040 * 1 2 3 28 28 H 1.09001 * 109.47460 * 150.00111 * 1 2 3 29 29 H 1.09000 * 110.76075 * 19.37376 * 5 4 2 30 30 H 1.09006 * 110.91319 * 256.06850 * 5 4 2 31 31 H 1.09005 * 108.69503 * 24.22516 * 8 6 5 32 32 H 1.09002 * 108.70008 * 142.32996 * 8 6 5 33 33 H 1.08995 * 109.86042 * 65.11397 * 9 8 6 34 34 H 1.09004 * 109.85570 * 186.06196 * 9 8 6 35 35 H 1.08997 * 109.77377 * 188.60112 * 10 9 8 36 36 H 1.08998 * 109.76939 * 309.33822 * 10 9 8 37 37 H 1.00903 * 110.99928 * 42.47263 * 13 11 10 38 38 H 1.08998 * 109.47335 * 300.00050 * 14 13 11 39 39 H 1.09007 * 109.46949 * 60.00261 * 14 13 11 40 40 H 0.97000 * 120.00068 * 180.02562 * 18 17 15 41 41 H 1.09005 * 110.35485 * 99.62718 * 25 4 2 42 42 H 1.08995 * 110.35749 * 337.33618 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 1.6256 -2.5478 -0.0006 6 6 2.5285 -3.2766 -1.0115 7 1 2.1251 -3.0215 -1.9914 8 6 2.4387 -4.7643 -0.9261 9 6 3.5458 -5.3906 -0.0844 10 6 4.8867 -4.9024 -0.6498 11 6 5.0005 -3.4226 -0.3402 12 1 5.0007 -3.2854 0.7411 13 7 6.2805 -2.9388 -0.8748 14 6 7.3845 -3.2450 0.0446 15 6 8.6780 -2.7342 -0.5359 16 1 8.6797 -2.2320 -1.4920 17 6 9.8592 -2.9081 0.1536 18 7 9.8573 -3.5202 1.3177 19 14 11.4626 -2.2744 -0.5656 20 1 11.3722 -0.8046 -0.7576 21 1 12.5787 -2.5851 0.3632 22 1 11.7112 -2.9302 -1.8746 23 6 3.8788 -2.5970 -0.9367 24 1 4.1684 -2.2482 -1.9279 25 6 3.6487 -1.3758 -0.0011 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8900 -0.5138 28 1 -0.3634 -0.8900 -0.5138 29 1 0.5893 -2.5474 -0.3383 30 1 1.7083 -3.0005 0.9876 31 1 1.4755 -5.0317 -0.4913 32 1 2.4929 -5.1761 -1.9338 33 1 3.4450 -5.0751 0.9540 34 1 3.4896 -6.4773 -0.1482 35 1 5.7056 -5.4438 -0.1761 36 1 4.9129 -5.0635 -1.7275 37 1 6.4569 -3.3210 -1.7918 38 1 7.2021 -2.7626 1.0049 39 1 7.4504 -4.3238 0.1866 40 1 10.6883 -3.6422 1.8029 41 1 4.0004 -1.5986 1.0063 42 1 4.1567 -0.4955 -0.3949 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575798269.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:36 Heat of formation + Delta-G solvation = -64.781813 kcal Electronic energy + Delta-G solvation = -20933.248566 eV Core-core repulsion = 17911.454398 eV Total energy + Delta-G solvation = -3021.794168 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.58098 -39.82489 -37.35557 -35.72340 -34.46525 -32.49096 -31.45723 -30.23494 -28.40070 -27.20415 -25.43867 -23.88868 -22.68810 -22.58204 -20.32074 -19.51199 -18.54630 -18.02237 -17.17167 -16.79444 -16.49860 -16.22673 -15.62677 -15.45265 -15.02466 -14.85341 -14.50162 -14.40587 -13.85550 -13.66999 -13.64271 -13.44322 -13.24581 -13.03260 -12.75762 -12.68896 -12.47012 -12.33020 -12.10630 -12.06462 -12.04711 -11.44197 -11.35445 -11.13398 -10.95899 -10.81743 -10.64820 -9.80659 -8.99283 -8.23345 -6.34233 1.38770 1.42464 1.50284 1.59988 1.98417 2.38579 3.09722 3.37283 3.50609 3.62224 3.79230 3.90623 4.09426 4.22805 4.28060 4.36471 4.43748 4.44532 4.55929 4.61058 4.63476 4.68695 4.74969 4.88992 4.93337 5.01812 5.06509 5.09232 5.15349 5.18733 5.20016 5.27231 5.36817 5.45227 5.52263 5.56977 5.63685 6.03790 6.48444 6.60819 6.75169 6.91182 7.12279 7.36719 8.87681 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.021504 B = 0.004692 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.752859 B = 5966.270413 C = 6943.869134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.515 3.485 3 O -0.613 6.613 4 N -0.628 5.628 5 C 0.106 3.894 6 C -0.089 4.089 7 H 0.074 0.926 8 C -0.094 4.094 9 C -0.111 4.111 10 C -0.142 4.142 11 C 0.099 3.901 12 H 0.048 0.952 13 N -0.692 5.692 14 C 0.215 3.785 15 C -0.538 4.538 16 H 0.061 0.939 17 C 0.003 3.997 18 N -0.933 5.933 19 Si 0.970 3.030 20 H -0.272 1.272 21 H -0.281 1.281 22 H -0.264 1.264 23 C -0.060 4.060 24 H 0.072 0.928 25 C 0.112 3.888 26 H 0.112 0.888 27 H 0.094 0.906 28 H 0.112 0.888 29 H 0.124 0.876 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.037 0.963 36 H 0.070 0.930 37 H 0.334 0.666 38 H -0.009 1.009 39 H -0.033 1.033 40 H 0.265 0.735 41 H 0.057 0.943 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.035 -4.364 -4.284 23.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.308 3.692 3 O -0.495 6.495 4 N -0.361 5.361 5 C -0.015 4.015 6 C -0.109 4.109 7 H 0.092 0.908 8 C -0.131 4.131 9 C -0.149 4.149 10 C -0.181 4.181 11 C -0.011 4.011 12 H 0.066 0.934 13 N -0.322 5.322 14 C 0.087 3.913 15 C -0.576 4.576 16 H 0.079 0.921 17 C -0.195 4.195 18 N -0.573 5.573 19 Si 0.794 3.206 20 H -0.198 1.198 21 H -0.206 1.206 22 H -0.189 1.189 23 C -0.080 4.080 24 H 0.090 0.910 25 C -0.011 4.011 26 H 0.130 0.870 27 H 0.113 0.887 28 H 0.130 0.870 29 H 0.142 0.858 30 H 0.103 0.897 31 H 0.115 0.885 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.055 0.945 36 H 0.089 0.911 37 H 0.151 0.849 38 H 0.009 0.991 39 H -0.016 1.016 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -22.777 -3.093 -3.911 23.316 hybrid contribution 1.875 -0.378 0.022 1.913 sum -20.902 -3.471 -3.889 21.542 Atomic orbital electron populations 1.21897 0.86756 1.06420 1.06356 1.21566 0.92377 0.81030 0.74270 1.90714 1.72447 1.32891 1.53486 1.49451 1.07519 1.07182 1.71912 1.22954 0.99371 0.78633 1.00526 1.20573 0.93182 0.96279 1.00842 0.90794 1.20554 0.99712 0.91701 1.01166 1.21516 0.93288 1.00647 0.99462 1.22032 0.98833 0.95859 1.01391 1.21065 0.89358 0.92774 0.97915 0.93352 1.60675 1.02103 1.63724 1.05704 1.19117 0.88701 0.92136 0.91301 1.21551 0.92731 1.37346 1.05950 0.92055 1.25916 1.03092 0.95308 0.95217 1.70080 1.28508 1.43679 1.15075 0.85432 0.77910 0.78839 0.78396 1.19751 1.20645 1.18920 1.21114 0.94269 0.94000 0.98610 0.90963 1.22619 0.81285 0.98152 0.99053 0.86993 0.88702 0.86962 0.85848 0.89745 0.88475 0.90876 0.92186 0.90467 0.94458 0.91091 0.84853 0.99094 1.01562 0.92644 0.92521 0.93545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.96 71.23 0.71 -1.35 16 2 C 0.52 13.79 8.03 87.65 0.70 14.50 16 3 O -0.61 -23.81 17.40 -3.06 -0.05 -23.86 16 4 N -0.63 -15.58 3.32 -804.59 -2.67 -18.25 16 5 C 0.11 1.57 6.29 86.23 0.54 2.11 16 6 C -0.09 -1.56 2.55 -12.22 -0.03 -1.59 16 7 H 0.07 1.16 8.03 -2.39 -0.02 1.14 16 8 C -0.09 -1.29 5.38 29.25 0.16 -1.14 16 9 C -0.11 -2.18 6.06 30.60 0.19 -2.00 16 10 C -0.14 -4.08 5.12 30.30 0.16 -3.92 16 11 C 0.10 3.34 1.92 43.97 0.08 3.43 16 12 H 0.05 1.84 6.75 -2.39 -0.02 1.83 16 13 N -0.69 -29.92 6.07 -500.49 -3.04 -32.96 16 14 C 0.22 11.71 5.20 85.56 0.45 12.15 16 15 C -0.54 -31.43 9.32 25.60 0.24 -31.19 16 16 H 0.06 3.50 7.81 -2.91 -0.02 3.48 16 17 C 0.00 0.17 5.46 84.65 0.46 0.63 16 18 N -0.93 -57.36 13.29 21.45 0.28 -57.08 16 19 Si 0.97 45.40 29.54 68.60 2.03 47.42 16 20 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 21 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 22 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 23 C -0.06 -1.66 2.95 -10.94 -0.03 -1.69 16 24 H 0.07 2.18 8.00 -2.39 -0.02 2.16 16 25 C 0.11 3.61 6.54 86.92 0.57 4.17 16 26 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.11 0.73 6.55 -2.39 -0.02 0.71 16 29 H 0.12 0.83 6.54 -2.39 -0.02 0.81 16 30 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.10 0.78 7.83 -2.38 -0.02 0.76 16 32 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.06 1.23 8.09 -2.39 -0.02 1.21 16 34 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 35 H 0.04 1.30 7.14 -2.39 -0.02 1.28 16 36 H 0.07 1.89 8.07 -2.39 -0.02 1.88 16 37 H 0.33 13.72 8.46 -89.69 -0.76 12.97 16 38 H -0.01 -0.55 8.04 -2.39 -0.02 -0.57 16 39 H -0.03 -1.91 7.12 -2.38 -0.02 -1.93 16 40 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 41 H 0.06 1.96 7.17 -2.38 -0.02 1.94 16 42 H 0.05 1.82 7.91 -2.39 -0.02 1.80 16 Total: -1.00 -76.88 328.26 0.98 -75.90 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 0.24 Total: 14.71 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: 4.19 Total: -5.88 kcal Atomic # 7 Polarization: -102.86 SS G_CDS: -5.42 Total: -108.29 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.05 Total: -23.86 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.42 kcal Total: -76.88 0.98 -75.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575798269.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.115 kcal (2) G-P(sol) polarization free energy of solvation -76.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds