Wall clock time and date at job start Mon Mar 30 2020 01:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50701 * 120.00279 * 2 1 4 4 N 1.46500 * 109.47474 * 124.56069 * 3 2 1 5 5 C 1.46501 * 119.99889 * 89.49980 * 4 3 2 6 6 C 1.50694 * 109.47008 * 90.00181 * 5 4 3 7 7 H 1.08002 * 120.00355 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99909 * 180.02562 * 6 5 4 9 9 N 1.31517 * 120.00107 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 120.00075 * 0.27229 * 8 6 5 11 11 H 1.48498 * 109.47241 * 269.72821 * 10 8 6 12 12 H 1.48500 * 109.46585 * 29.72813 * 10 8 6 13 13 H 1.48501 * 109.46779 * 149.72484 * 10 8 6 14 14 C 1.34780 * 119.99939 * 269.50127 * 4 3 2 15 15 O 1.21281 * 120.00055 * 5.14044 * 14 4 3 16 16 C 1.50700 * 119.99870 * 185.13534 * 14 4 3 17 17 H 1.09009 * 109.46186 * 329.85322 * 16 14 4 18 18 C 1.53032 * 109.46323 * 89.81630 * 16 14 4 19 19 C 1.53114 * 109.27910 * 179.19627 * 18 16 14 20 20 C 1.53122 * 109.16157 * 302.34604 * 19 18 16 21 21 C 1.53034 * 109.27621 * 57.65570 * 20 19 18 22 22 N 1.46841 * 109.52385 * 300.82242 * 21 20 19 23 23 C 1.46908 * 111.00146 * 185.84032 * 22 21 20 24 24 H 1.07996 * 120.00162 * 0.02562 * 1 2 3 25 25 H 1.08001 * 119.99984 * 179.97438 * 1 2 3 26 26 H 1.08002 * 120.00437 * 180.02562 * 2 1 3 27 27 H 1.09007 * 109.46439 * 4.56477 * 3 2 1 28 28 H 1.09000 * 109.47680 * 244.56852 * 3 2 1 29 29 H 1.08996 * 109.46855 * 330.00162 * 5 4 3 30 30 H 1.08998 * 109.46947 * 209.99995 * 5 4 3 31 31 H 0.96999 * 119.99883 * 179.97438 * 9 8 6 32 32 H 1.08994 * 109.50483 * 299.13701 * 18 16 14 33 33 H 1.09000 * 109.50191 * 59.25926 * 18 16 14 34 34 H 1.09008 * 109.52764 * 182.44235 * 19 18 16 35 35 H 1.09000 * 109.57995 * 62.28681 * 19 18 16 36 36 H 1.08998 * 109.50813 * 297.71582 * 20 19 18 37 37 H 1.09004 * 109.50518 * 177.59454 * 20 19 18 38 38 H 1.09001 * 109.46474 * 180.80331 * 21 20 19 39 39 H 1.09006 * 109.46309 * 60.83531 * 21 20 19 40 40 H 1.08998 * 109.46995 * 295.79004 * 23 22 21 41 41 H 1.08996 * 109.47199 * 55.78621 * 23 22 21 42 42 H 1.08998 * 109.47313 * 175.78634 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9863 1.3363 1.1374 5 6 4.3490 0.8193 0.9895 6 6 5.2622 1.9313 0.5417 7 1 4.8671 2.9239 0.3835 8 6 6.6021 1.6814 0.3339 9 7 7.3992 2.6520 -0.0565 10 14 7.2841 -0.0372 0.6000 11 1 7.7368 -0.1777 2.0073 12 1 6.2247 -1.0390 0.3184 13 1 8.4327 -0.2609 -0.3142 14 6 2.5814 1.8405 2.3200 15 8 1.4275 2.1822 2.4704 16 6 3.5626 1.9796 3.4553 17 1 4.3217 1.2011 3.3768 18 6 4.2326 3.3536 3.3848 19 6 5.2136 3.4982 4.5515 20 6 4.4588 3.3051 5.8697 21 6 3.7823 1.9325 5.8682 22 7 2.8536 1.8443 4.7341 23 6 2.0841 0.5937 4.7798 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3579 2.1319 0.0818 28 1 2.6274 1.3991 -0.9281 29 1 4.3563 0.0217 0.2466 30 1 4.6950 0.4280 1.9462 31 1 8.3419 2.4763 -0.2023 32 1 4.7718 3.4476 2.4423 33 1 3.4730 4.1326 3.4495 34 1 5.6612 4.4919 4.5302 35 1 5.9963 2.7443 4.4661 36 1 3.7027 4.0833 5.9735 37 1 5.1597 3.3645 6.7024 38 1 3.2322 1.7976 6.7995 39 1 4.5402 1.1541 5.7782 40 1 2.7602 -0.2533 4.6638 41 1 1.5689 0.5189 5.7374 42 1 1.3522 0.5878 3.9721 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590409137.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:54 Heat of formation + Delta-G solvation = -8.924673 kcal Electronic energy + Delta-G solvation = -21856.122673 eV Core-core repulsion = 18836.750653 eV Total energy + Delta-G solvation = -3019.372020 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.91961 -37.67283 -35.45700 -33.59643 -33.08392 -32.24156 -30.62633 -28.10720 -26.72522 -25.73572 -23.17609 -22.70579 -22.22564 -19.95556 -19.32031 -18.20008 -17.05974 -16.61163 -15.89962 -15.03501 -14.94144 -14.45020 -14.15382 -14.08606 -13.90007 -13.57772 -13.21481 -12.73052 -12.58716 -12.47990 -12.29234 -12.13127 -11.74024 -11.47657 -11.38797 -11.10545 -10.94936 -10.81438 -10.65503 -10.48077 -10.29490 -10.22191 -10.00030 -9.58251 -9.28524 -8.81632 -8.72369 -7.92482 -7.78118 -6.25830 -4.26721 2.50696 3.12758 3.21158 3.23178 3.32990 3.77204 4.22204 4.38484 5.03651 5.11438 5.14906 5.25751 5.28660 5.44797 5.53072 5.55334 5.63236 5.70621 5.82760 5.86059 5.93112 6.00501 6.12013 6.13279 6.23307 6.27440 6.29037 6.34273 6.40903 6.51715 6.63773 6.78119 6.86676 6.92222 7.04073 7.23897 7.35989 7.39373 7.44907 8.10720 8.38069 8.78440 8.96803 9.33739 10.86215 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.012156 B = 0.010236 C = 0.006543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.876529 B = 2734.835831 C = 4278.611550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.161 4.161 3 C 0.145 3.855 4 N -0.589 5.589 5 C 0.206 3.794 6 C -0.538 4.538 7 H 0.082 0.918 8 C 0.079 3.921 9 N -0.887 5.887 10 Si 0.866 3.134 11 H -0.274 1.274 12 H -0.265 1.265 13 H -0.282 1.282 14 C 0.525 3.475 15 O -0.549 6.549 16 C 0.077 3.923 17 H 0.065 0.935 18 C -0.108 4.108 19 C -0.116 4.116 20 C -0.117 4.117 21 C 0.058 3.942 22 N -0.524 5.524 23 C 0.021 3.979 24 H 0.097 0.903 25 H 0.091 0.909 26 H 0.104 0.896 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.034 0.966 30 H 0.027 0.973 31 H 0.266 0.734 32 H 0.104 0.896 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.030 0.970 40 H 0.017 0.983 41 H 0.063 0.937 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.974 -4.006 7.032 10.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.181 4.181 3 C 0.022 3.978 4 N -0.320 5.320 5 C 0.085 3.915 6 C -0.576 4.576 7 H 0.100 0.900 8 C -0.125 4.125 9 N -0.525 5.525 10 Si 0.693 3.307 11 H -0.200 1.200 12 H -0.190 1.190 13 H -0.208 1.208 14 C 0.313 3.687 15 O -0.428 6.428 16 C -0.033 4.033 17 H 0.082 0.918 18 C -0.146 4.146 19 C -0.154 4.154 20 C -0.155 4.155 21 C -0.070 4.070 22 N -0.249 5.249 23 C -0.128 4.128 24 H 0.115 0.885 25 H 0.109 0.891 26 H 0.122 0.878 27 H 0.097 0.903 28 H 0.106 0.894 29 H 0.052 0.948 30 H 0.045 0.955 31 H 0.077 0.923 32 H 0.122 0.878 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.048 0.952 40 H 0.035 0.965 41 H 0.082 0.918 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.688 -3.393 7.077 10.311 hybrid contribution 1.273 -1.738 -0.025 2.155 sum -5.416 -5.131 7.052 10.266 Atomic orbital electron populations 1.23741 0.95836 1.01393 1.01276 1.23379 0.96182 0.99255 0.99244 1.20418 0.92441 0.94841 0.90075 1.47927 1.14006 1.60226 1.09855 1.19870 0.78810 0.95768 0.97046 1.21338 0.92483 0.96916 1.46860 0.89992 1.24839 0.96782 0.96547 0.94292 1.69881 1.05216 1.31893 1.45462 0.87003 0.79463 0.85505 0.78753 1.19953 1.18962 1.20809 1.20259 0.88224 0.76671 0.83574 1.90590 1.19175 1.50482 1.82505 1.21609 0.93784 1.00329 0.87617 0.91763 1.21600 0.98100 0.93931 1.00966 1.21522 0.97849 1.01928 0.94052 1.21625 0.99106 0.97038 0.97747 1.22087 0.94100 0.97212 0.93569 1.61678 1.26061 1.35750 1.01435 1.22451 0.98042 0.89170 1.03097 0.88517 0.89052 0.87801 0.90337 0.89376 0.94848 0.95533 0.92344 0.87773 0.91746 0.91655 0.92000 0.91239 0.91959 0.91008 0.95184 0.96458 0.91772 0.90165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.63 14.32 29.02 0.42 -2.22 16 2 C -0.16 -2.57 9.85 -36.02 -0.35 -2.93 16 3 C 0.15 2.64 5.81 -5.19 -0.03 2.61 16 4 N -0.59 -12.08 2.44 -176.43 -0.43 -12.51 16 5 C 0.21 4.49 3.99 -5.20 -0.02 4.47 16 6 C -0.54 -13.51 8.42 -34.44 -0.29 -13.80 16 7 H 0.08 2.29 7.56 -52.49 -0.40 1.90 16 8 C 0.08 2.06 5.47 -17.82 -0.10 1.97 16 9 N -0.89 -24.84 13.96 55.43 0.77 -24.06 16 10 Si 0.87 19.41 27.47 -169.99 -4.67 14.74 16 11 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 12 H -0.26 -5.67 6.53 56.52 0.37 -5.30 16 13 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 14 C 0.53 10.97 5.74 -10.98 -0.06 10.90 16 15 O -0.55 -12.40 14.86 5.56 0.08 -12.32 16 16 C 0.08 1.49 1.72 -68.88 -0.12 1.37 16 17 H 0.06 1.29 5.81 -51.92 -0.30 0.99 16 18 C -0.11 -2.05 5.36 -26.66 -0.14 -2.20 16 19 C -0.12 -1.86 6.00 -26.61 -0.16 -2.02 16 20 C -0.12 -1.62 6.09 -26.65 -0.16 -1.79 16 21 C 0.06 0.84 5.46 -3.84 -0.02 0.82 16 22 N -0.52 -9.09 4.51 -236.33 -1.07 -10.15 16 23 C 0.02 0.33 9.13 60.07 0.55 0.88 16 24 H 0.10 1.38 7.84 -52.49 -0.41 0.97 16 25 H 0.09 1.11 8.06 -52.49 -0.42 0.69 16 26 H 0.10 1.60 8.06 -52.49 -0.42 1.17 16 27 H 0.08 1.46 7.13 -51.93 -0.37 1.09 16 28 H 0.09 1.58 8.08 -51.93 -0.42 1.16 16 29 H 0.03 0.72 7.11 -51.93 -0.37 0.35 16 30 H 0.03 0.58 5.33 -51.93 -0.28 0.30 16 31 H 0.27 7.04 8.31 -40.82 -0.34 6.71 16 32 H 0.10 2.27 5.93 -51.93 -0.31 1.97 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.90 8.09 -51.93 -0.42 0.48 16 39 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.06 0.88 8.09 -51.93 -0.42 0.45 16 42 H 0.08 1.45 6.01 -51.93 -0.31 1.14 16 LS Contribution 329.75 15.07 4.97 4.97 Total: -1.00 -28.34 329.75 -7.82 -36.15 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -6.98 Total: 5.10 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: -0.50 Total: -1.93 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: -0.72 Total: -46.72 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.08 Total: -12.32 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -4.67 Total: 14.74 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.34 -7.82 -36.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590409137.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.229 kcal (2) G-P(sol) polarization free energy of solvation -28.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds