Wall clock time and date at job start Mon Mar 30 2020 01:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50701 * 120.00279 * 2 1 4 4 N 1.46500 * 109.47474 * 124.56069 * 3 2 1 5 5 C 1.46501 * 119.99889 * 89.49980 * 4 3 2 6 6 C 1.50694 * 109.47008 * 90.00181 * 5 4 3 7 7 H 1.08002 * 120.00355 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99909 * 180.02562 * 6 5 4 9 9 N 1.31517 * 120.00107 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 120.00075 * 0.27229 * 8 6 5 11 11 H 1.48498 * 109.47241 * 269.72821 * 10 8 6 12 12 H 1.48500 * 109.46585 * 29.72813 * 10 8 6 13 13 H 1.48501 * 109.46779 * 149.72484 * 10 8 6 14 14 C 1.34780 * 119.99939 * 269.50127 * 4 3 2 15 15 O 1.21281 * 120.00055 * 5.14044 * 14 4 3 16 16 C 1.50700 * 119.99870 * 185.13534 * 14 4 3 17 17 H 1.09009 * 109.46186 * 329.85322 * 16 14 4 18 18 C 1.53032 * 109.46323 * 89.81630 * 16 14 4 19 19 C 1.53114 * 109.27910 * 179.19627 * 18 16 14 20 20 C 1.53122 * 109.16157 * 302.34604 * 19 18 16 21 21 C 1.53034 * 109.27621 * 57.65570 * 20 19 18 22 22 N 1.46841 * 109.52385 * 300.82242 * 21 20 19 23 23 C 1.46908 * 111.00146 * 185.84032 * 22 21 20 24 24 H 1.07996 * 120.00162 * 0.02562 * 1 2 3 25 25 H 1.08001 * 119.99984 * 179.97438 * 1 2 3 26 26 H 1.08002 * 120.00437 * 180.02562 * 2 1 3 27 27 H 1.09007 * 109.46439 * 4.56477 * 3 2 1 28 28 H 1.09000 * 109.47680 * 244.56852 * 3 2 1 29 29 H 1.08996 * 109.46855 * 330.00162 * 5 4 3 30 30 H 1.08998 * 109.46947 * 209.99995 * 5 4 3 31 31 H 0.96999 * 119.99883 * 179.97438 * 9 8 6 32 32 H 1.08994 * 109.50483 * 299.13701 * 18 16 14 33 33 H 1.09000 * 109.50191 * 59.25926 * 18 16 14 34 34 H 1.09008 * 109.52764 * 182.44235 * 19 18 16 35 35 H 1.09000 * 109.57995 * 62.28681 * 19 18 16 36 36 H 1.08998 * 109.50813 * 297.71582 * 20 19 18 37 37 H 1.09004 * 109.50518 * 177.59454 * 20 19 18 38 38 H 1.09001 * 109.46474 * 180.80331 * 21 20 19 39 39 H 1.09006 * 109.46309 * 60.83531 * 21 20 19 40 40 H 1.08998 * 109.46995 * 295.79004 * 23 22 21 41 41 H 1.08996 * 109.47199 * 55.78621 * 23 22 21 42 42 H 1.08998 * 109.47313 * 175.78634 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9863 1.3363 1.1374 5 6 4.3490 0.8193 0.9895 6 6 5.2622 1.9313 0.5417 7 1 4.8671 2.9239 0.3835 8 6 6.6021 1.6814 0.3339 9 7 7.3992 2.6520 -0.0565 10 14 7.2841 -0.0372 0.6000 11 1 7.7368 -0.1777 2.0073 12 1 6.2247 -1.0390 0.3184 13 1 8.4327 -0.2609 -0.3142 14 6 2.5814 1.8405 2.3200 15 8 1.4275 2.1822 2.4704 16 6 3.5626 1.9796 3.4553 17 1 4.3217 1.2011 3.3768 18 6 4.2326 3.3536 3.3848 19 6 5.2136 3.4982 4.5515 20 6 4.4588 3.3051 5.8697 21 6 3.7823 1.9325 5.8682 22 7 2.8536 1.8443 4.7341 23 6 2.0841 0.5937 4.7798 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3579 2.1319 0.0818 28 1 2.6274 1.3991 -0.9281 29 1 4.3563 0.0217 0.2466 30 1 4.6950 0.4280 1.9462 31 1 8.3419 2.4763 -0.2023 32 1 4.7718 3.4476 2.4423 33 1 3.4730 4.1326 3.4495 34 1 5.6612 4.4919 4.5302 35 1 5.9963 2.7443 4.4661 36 1 3.7027 4.0833 5.9735 37 1 5.1597 3.3645 6.7024 38 1 3.2322 1.7976 6.7995 39 1 4.5402 1.1541 5.7782 40 1 2.7602 -0.2533 4.6638 41 1 1.5689 0.5189 5.7374 42 1 1.3522 0.5878 3.9721 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590409137.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:53 Heat of formation + Delta-G solvation = -26.350808 kcal Electronic energy + Delta-G solvation = -21856.878327 eV Core-core repulsion = 18836.750653 eV Total energy + Delta-G solvation = -3020.127674 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.46744 -39.08815 -37.09778 -35.17248 -34.41513 -34.02828 -31.97863 -29.94246 -28.06956 -27.14324 -24.73497 -24.30099 -23.65698 -21.25147 -20.62623 -19.82047 -19.00279 -18.19052 -17.47986 -16.55909 -16.34369 -16.03308 -15.60269 -15.46954 -15.22319 -15.11854 -14.64254 -14.41478 -14.01491 -13.88586 -13.82123 -13.66837 -13.21987 -13.04206 -12.75745 -12.60141 -12.47881 -12.26268 -12.20409 -11.98582 -11.80063 -11.65347 -11.59367 -11.22912 -10.77667 -10.66720 -10.22599 -9.47069 -9.26009 -8.28038 -6.33571 1.26371 1.36705 1.39828 1.47515 1.68350 2.28415 2.33309 3.01304 3.05084 3.60545 3.90294 3.97588 4.00278 4.09157 4.18355 4.22031 4.33312 4.46062 4.52016 4.54425 4.63502 4.68578 4.73030 4.78115 4.83771 4.87371 4.97970 5.02846 5.04925 5.10264 5.21861 5.32571 5.43689 5.46142 5.61633 5.65756 5.82802 5.98642 6.16157 6.20358 6.59389 6.71077 7.25763 7.35612 8.87382 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.012156 B = 0.010236 C = 0.006543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.876529 B = 2734.835831 C = 4278.611550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.180 4.180 3 C 0.142 3.858 4 N -0.593 5.593 5 C 0.216 3.784 6 C -0.530 4.530 7 H 0.038 0.962 8 C 0.027 3.973 9 N -0.935 5.935 10 Si 0.928 3.072 11 H -0.264 1.264 12 H -0.243 1.243 13 H -0.285 1.285 14 C 0.521 3.479 15 O -0.570 6.570 16 C 0.084 3.916 17 H 0.056 0.944 18 C -0.103 4.103 19 C -0.114 4.114 20 C -0.110 4.110 21 C 0.055 3.945 22 N -0.537 5.537 23 C 0.024 3.976 24 H 0.093 0.907 25 H 0.120 0.880 26 H 0.114 0.886 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.045 0.955 30 H 0.036 0.964 31 H 0.267 0.733 32 H 0.066 0.934 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.034 0.966 40 H 0.024 0.976 41 H 0.091 0.909 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.461 -6.184 8.861 12.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.199 4.199 3 C 0.020 3.980 4 N -0.324 5.324 5 C 0.094 3.906 6 C -0.568 4.568 7 H 0.056 0.944 8 C -0.172 4.172 9 N -0.575 5.575 10 Si 0.752 3.248 11 H -0.189 1.189 12 H -0.166 1.166 13 H -0.210 1.210 14 C 0.309 3.691 15 O -0.450 6.450 16 C -0.027 4.027 17 H 0.074 0.926 18 C -0.142 4.142 19 C -0.151 4.151 20 C -0.148 4.148 21 C -0.072 4.072 22 N -0.262 5.262 23 C -0.124 4.124 24 H 0.112 0.888 25 H 0.138 0.862 26 H 0.132 0.868 27 H 0.086 0.914 28 H 0.102 0.898 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.112 0.888 38 H 0.118 0.882 39 H 0.052 0.948 40 H 0.043 0.957 41 H 0.109 0.891 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.199 -5.581 8.906 12.740 hybrid contribution 1.326 -0.945 -0.627 1.744 sum -5.874 -6.526 8.280 12.068 Atomic orbital electron populations 1.23962 0.95270 1.02610 0.98303 1.23224 0.96707 0.98073 1.01910 1.20504 0.92115 0.96258 0.89167 1.48008 1.13831 1.60038 1.10490 1.19689 0.78792 0.94619 0.97479 1.21378 0.93179 0.96091 1.46167 0.94352 1.25625 0.97002 1.00613 0.94005 1.70030 1.05610 1.34428 1.47406 0.85997 0.79076 0.80796 0.78950 1.18940 1.16632 1.21033 1.20618 0.88285 0.76120 0.84058 1.90563 1.20048 1.51385 1.82965 1.21477 0.93183 0.99670 0.88416 0.92640 1.21466 0.98145 0.93918 1.00629 1.21516 0.97142 1.02177 0.94288 1.21608 0.99366 0.96809 0.97005 1.22255 0.94116 0.97491 0.93372 1.61701 1.26706 1.36730 1.01101 1.22428 0.97595 0.88800 1.03594 0.88842 0.86192 0.86843 0.91376 0.89804 0.93702 0.94576 0.92333 0.91540 0.92751 0.90952 0.92643 0.91327 0.88840 0.88248 0.94818 0.95733 0.89081 0.92651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.35 14.32 67.79 0.97 -3.38 16 2 C -0.18 -5.53 9.85 25.65 0.25 -5.28 16 3 C 0.14 5.24 5.81 85.63 0.50 5.74 16 4 N -0.59 -24.63 2.44 -830.50 -2.03 -26.65 16 5 C 0.22 9.37 3.99 85.63 0.34 9.71 16 6 C -0.53 -27.44 8.42 25.60 0.22 -27.23 16 7 H 0.04 2.28 7.56 -2.91 -0.02 2.26 16 8 C 0.03 1.43 5.47 84.65 0.46 1.89 16 9 N -0.94 -54.02 13.96 21.45 0.30 -53.72 16 10 Si 0.93 39.39 27.47 68.60 1.88 41.27 16 11 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 12 H -0.24 -9.38 6.53 99.48 0.65 -8.73 16 13 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 14 C 0.52 22.03 5.74 87.66 0.50 22.53 16 15 O -0.57 -26.03 14.86 -3.03 -0.05 -26.07 16 16 C 0.08 3.21 1.72 44.19 0.08 3.29 16 17 H 0.06 2.21 5.81 -2.38 -0.01 2.20 16 18 C -0.10 -4.04 5.36 30.64 0.16 -3.88 16 19 C -0.11 -3.59 6.00 30.67 0.18 -3.40 16 20 C -0.11 -2.77 6.09 30.65 0.19 -2.58 16 21 C 0.05 1.42 5.46 86.33 0.47 1.89 16 22 N -0.54 -17.75 4.51 -901.61 -4.07 -21.82 16 23 C 0.02 0.71 9.13 127.69 1.17 1.87 16 24 H 0.09 2.54 7.84 -2.91 -0.02 2.52 16 25 H 0.12 2.52 8.06 -2.91 -0.02 2.50 16 26 H 0.11 3.27 8.06 -2.91 -0.02 3.25 16 27 H 0.07 2.61 7.13 -2.38 -0.02 2.59 16 28 H 0.08 3.09 8.08 -2.39 -0.02 3.07 16 29 H 0.05 1.86 7.11 -2.39 -0.02 1.85 16 30 H 0.04 1.53 5.33 -2.39 -0.01 1.51 16 31 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 32 H 0.07 3.08 5.93 -2.39 -0.01 3.07 16 33 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 35 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 38 H 0.10 2.07 8.09 -2.39 -0.02 2.05 16 39 H 0.03 0.87 8.14 -2.38 -0.02 0.85 16 40 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.09 2.20 8.09 -2.39 -0.02 2.18 16 42 H 0.05 1.94 6.01 -2.39 -0.01 1.92 16 Total: -1.00 -62.68 329.75 2.46 -60.22 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: 0.92 Total: 25.58 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: 5.49 Total: 1.19 kcal Atomic # 7 Polarization: -96.40 SS G_CDS: -5.79 Total: -102.19 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -0.05 Total: -26.07 kcal Atomic # 14 Polarization: 39.39 SS G_CDS: 1.88 Total: 41.27 kcal Total: -62.68 2.46 -60.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590409137.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.873 kcal (2) G-P(sol) polarization free energy of solvation -62.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds