Wall clock time and date at job start Mon Mar 30 2020 01:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50700 * 119.99891 * 2 1 4 4 N 1.46500 * 109.46905 * 125.64435 * 3 2 1 5 5 C 1.46506 * 120.00165 * 274.80951 * 4 3 2 6 6 C 1.50701 * 109.47107 * 270.00661 * 5 4 3 7 7 H 1.08001 * 119.99907 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99962 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99763 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00046 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47234 * 89.99449 * 10 8 6 12 12 H 1.48506 * 109.46900 * 209.99396 * 10 8 6 13 13 H 1.48498 * 109.46988 * 329.99266 * 10 8 6 14 14 C 1.34773 * 120.00451 * 94.81631 * 4 3 2 15 15 O 1.21284 * 119.99672 * 5.06803 * 14 4 3 16 16 C 1.50702 * 120.00433 * 185.07586 * 14 4 3 17 17 H 1.08996 * 109.45757 * 31.64123 * 16 14 4 18 18 C 1.53031 * 109.45445 * 271.66736 * 16 14 4 19 19 C 1.53113 * 109.28030 * 180.81055 * 18 16 14 20 20 C 1.53123 * 109.16239 * 57.64880 * 19 18 16 21 21 C 1.53026 * 109.28056 * 302.35007 * 20 19 18 22 22 N 1.46847 * 109.46065 * 151.61633 * 16 14 4 23 23 C 1.46894 * 111.00501 * 305.84374 * 22 16 14 24 24 H 1.08003 * 119.99777 * 359.97438 * 1 2 3 25 25 H 1.07996 * 120.00388 * 180.02562 * 1 2 3 26 26 H 1.08000 * 119.99846 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.47578 * 5.64362 * 3 2 1 28 28 H 1.08996 * 109.47274 * 245.63688 * 3 2 1 29 29 H 1.09000 * 109.46628 * 29.99905 * 5 4 3 30 30 H 1.08994 * 109.47475 * 150.00130 * 5 4 3 31 31 H 0.96993 * 119.99814 * 180.02562 * 9 8 6 32 32 H 1.08996 * 109.50433 * 60.86708 * 18 16 14 33 33 H 1.09007 * 109.50350 * 300.74883 * 18 16 14 34 34 H 1.09005 * 109.52577 * 297.74771 * 19 18 16 35 35 H 1.08997 * 109.52844 * 177.55927 * 19 18 16 36 36 H 1.09000 * 109.49630 * 62.29165 * 20 19 18 37 37 H 1.09002 * 109.50142 * 182.40385 * 20 19 18 38 38 H 1.09003 * 109.46302 * 179.19253 * 21 20 19 39 39 H 1.09002 * 109.46606 * 299.16216 * 21 20 19 40 40 H 1.09007 * 109.47455 * 299.75006 * 23 22 16 41 41 H 1.09000 * 109.47099 * 59.74571 * 23 22 16 42 42 H 1.08997 * 109.47770 * 179.74729 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0047 1.3255 1.1225 5 6 2.5533 1.7523 2.4493 6 6 2.7438 3.2405 2.5902 7 1 3.1599 3.8114 1.7732 8 6 2.3878 3.8732 3.7624 9 7 1.8816 3.1780 4.7574 10 14 2.6246 5.7179 3.9372 11 1 1.3996 6.4200 3.4773 12 1 2.8810 6.0512 5.3615 13 1 3.7816 6.1488 3.1120 14 6 4.2859 0.9519 0.9346 15 8 4.6830 0.6871 -0.1804 16 6 5.2250 0.8630 2.1098 17 1 4.6660 0.5762 3.0004 18 6 5.8855 2.2243 2.3386 19 6 6.8537 2.1243 3.5205 20 6 7.8905 1.0355 3.2301 21 6 7.1719 -0.2914 2.9755 22 7 6.2582 -0.1438 1.8353 23 6 5.6542 -1.4333 1.4745 24 1 -0.5400 0.9354 0.0004 25 1 -0.5400 -0.9352 0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3595 2.1312 0.1011 28 1 2.6122 1.4078 -0.9361 29 1 1.4979 1.5081 2.5699 30 1 3.1350 1.2375 3.2140 31 1 1.6309 3.6231 5.5818 32 1 5.1195 2.9682 2.5577 33 1 6.4334 2.5182 1.4433 34 1 6.3003 1.8685 4.4242 35 1 7.3586 3.0801 3.6599 36 1 8.4698 1.3106 2.3488 37 1 8.5569 0.9300 4.0862 38 1 7.9066 -1.0657 2.7542 39 1 6.6037 -0.5728 3.8621 40 1 5.0357 -1.7883 2.2989 41 1 5.0369 -1.3091 0.5847 42 1 6.4414 -2.1594 1.2720 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590409138.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:57 Heat of formation + Delta-G solvation = -14.448107 kcal Electronic energy + Delta-G solvation = -21773.491366 eV Core-core repulsion = 18753.879832 eV Total energy + Delta-G solvation = -3019.611535 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.85521 -37.60758 -35.41842 -33.55310 -33.04613 -32.17720 -30.60358 -27.53778 -26.67107 -25.59458 -23.28076 -22.81171 -22.28751 -19.97128 -19.29818 -18.20463 -16.61419 -16.35160 -15.90811 -15.08205 -14.77470 -14.49225 -14.32156 -14.13563 -13.97999 -13.28788 -13.12668 -12.70775 -12.47833 -12.42307 -12.10592 -11.80738 -11.43696 -11.42596 -11.31843 -11.07598 -10.94861 -10.89491 -10.72357 -10.48407 -10.25070 -10.17815 -9.93276 -9.74102 -9.16934 -8.76376 -8.56730 -7.87905 -7.73045 -6.21352 -4.27804 2.55683 3.20332 3.28076 3.30398 3.40666 3.86025 4.29384 4.45418 5.09663 5.14900 5.17606 5.28048 5.35360 5.49602 5.57791 5.58871 5.67132 5.74802 5.85447 5.90001 5.98240 6.04607 6.15220 6.19254 6.25833 6.29308 6.35953 6.36547 6.49906 6.72919 6.77474 6.91441 6.93607 7.04328 7.17338 7.34576 7.43472 7.57645 7.73859 8.03046 8.33394 8.77373 9.05355 9.38929 10.85196 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.012505 B = 0.009588 C = 0.006074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.613749 B = 2919.568738 C = 4608.775008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.155 4.155 3 C 0.141 3.859 4 N -0.594 5.594 5 C 0.237 3.763 6 C -0.535 4.535 7 H 0.063 0.937 8 C 0.067 3.933 9 N -0.889 5.889 10 Si 0.893 3.107 11 H -0.279 1.279 12 H -0.285 1.285 13 H -0.271 1.271 14 C 0.523 3.477 15 O -0.557 6.557 16 C 0.078 3.922 17 H 0.066 0.934 18 C -0.112 4.112 19 C -0.117 4.117 20 C -0.117 4.117 21 C 0.058 3.942 22 N -0.524 5.524 23 C 0.020 3.980 24 H 0.098 0.902 25 H 0.092 0.908 26 H 0.101 0.899 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.035 0.965 30 H 0.038 0.962 31 H 0.265 0.735 32 H 0.105 0.895 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.031 0.969 40 H 0.018 0.982 41 H 0.080 0.920 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.784 -5.526 -2.272 7.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.174 4.174 3 C 0.018 3.982 4 N -0.324 5.324 5 C 0.117 3.883 6 C -0.573 4.573 7 H 0.081 0.919 8 C -0.136 4.136 9 N -0.527 5.527 10 Si 0.720 3.280 11 H -0.205 1.205 12 H -0.210 1.210 13 H -0.196 1.196 14 C 0.311 3.689 15 O -0.437 6.437 16 C -0.032 4.032 17 H 0.084 0.916 18 C -0.150 4.150 19 C -0.155 4.155 20 C -0.155 4.155 21 C -0.070 4.070 22 N -0.249 5.249 23 C -0.128 4.128 24 H 0.116 0.884 25 H 0.111 0.889 26 H 0.119 0.881 27 H 0.099 0.901 28 H 0.102 0.898 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.123 0.877 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.049 0.951 40 H 0.036 0.964 41 H 0.098 0.902 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.182 -5.471 -3.044 8.127 hybrid contribution -0.574 0.661 1.082 1.392 sum 4.608 -4.810 -1.962 6.944 Atomic orbital electron populations 1.23759 0.95769 1.01552 1.01859 1.23368 0.96095 0.99209 0.98767 1.20405 0.92082 0.94620 0.91063 1.48233 1.08256 1.63795 1.12150 1.19468 0.96281 0.95176 0.77382 1.21452 1.42907 0.92673 1.00273 0.91905 1.24924 0.94717 0.98438 0.95550 1.69923 1.41977 1.35970 1.04839 0.86571 0.78827 0.85161 0.77449 1.20528 1.21048 1.19570 1.20279 0.82336 0.76443 0.89870 1.90575 1.76516 1.51279 1.25324 1.21569 0.91384 0.94490 0.95796 0.91612 1.21667 0.99612 0.95553 0.98197 1.21545 0.96886 0.98421 0.98648 1.21613 0.97861 0.94788 1.01200 1.22078 0.95450 0.97921 0.91505 1.61670 1.18622 1.07331 1.37295 1.22452 0.99120 0.90388 1.00805 0.88411 0.88936 0.88052 0.90060 0.89817 0.94664 0.94457 0.92517 0.87650 0.91767 0.91899 0.91838 0.91300 0.91992 0.91053 0.95108 0.96385 0.90155 0.91843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.79 14.32 29.02 0.42 -2.38 16 2 C -0.16 -2.57 9.84 -36.03 -0.35 -2.93 16 3 C 0.14 2.66 5.94 -5.19 -0.03 2.63 16 4 N -0.59 -12.57 2.44 -176.43 -0.43 -13.00 16 5 C 0.24 5.55 5.03 -5.19 -0.03 5.52 16 6 C -0.53 -13.41 7.27 -34.44 -0.25 -13.66 16 7 H 0.06 1.61 7.77 -52.49 -0.41 1.20 16 8 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 9 N -0.89 -23.90 13.29 55.43 0.74 -23.16 16 10 Si 0.89 20.08 29.54 -169.99 -5.02 15.06 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 14 C 0.52 11.16 5.80 -10.99 -0.06 11.09 16 15 O -0.56 -12.83 14.62 5.55 0.08 -12.75 16 16 C 0.08 1.53 1.56 -68.88 -0.11 1.42 16 17 H 0.07 1.36 6.03 -51.93 -0.31 1.05 16 18 C -0.11 -2.13 5.35 -26.66 -0.14 -2.27 16 19 C -0.12 -1.86 6.00 -26.61 -0.16 -2.02 16 20 C -0.12 -1.61 6.09 -26.65 -0.16 -1.78 16 21 C 0.06 0.85 5.46 -3.84 -0.02 0.83 16 22 N -0.52 -9.19 4.51 -236.33 -1.07 -10.25 16 23 C 0.02 0.33 9.13 60.06 0.55 0.88 16 24 H 0.10 1.38 7.84 -52.48 -0.41 0.97 16 25 H 0.09 1.17 8.06 -52.49 -0.42 0.74 16 26 H 0.10 1.68 8.06 -52.49 -0.42 1.25 16 27 H 0.08 1.51 7.76 -51.93 -0.40 1.11 16 28 H 0.08 1.59 7.22 -51.93 -0.38 1.21 16 29 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 30 H 0.04 0.92 5.75 -51.93 -0.30 0.62 16 31 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 32 H 0.11 2.25 5.77 -51.93 -0.30 1.95 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.91 8.09 -51.93 -0.42 0.49 16 39 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.08 1.46 5.94 -51.93 -0.31 1.16 16 42 H 0.06 0.88 8.10 -51.93 -0.42 0.46 16 LS Contribution 332.73 15.07 5.01 5.01 Total: -1.00 -27.71 332.73 -8.15 -35.87 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -7.02 Total: 4.28 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -0.45 Total: -1.05 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: -0.76 Total: -46.41 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.08 Total: -12.75 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -27.71 -8.15 -35.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590409138.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.421 kcal (2) G-P(sol) polarization free energy of solvation -27.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds