Wall clock time and date at job start Mon Mar 30 2020 01:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50700 * 119.99891 * 2 1 4 4 N 1.46500 * 109.46905 * 125.64435 * 3 2 1 5 5 C 1.46506 * 120.00165 * 274.80951 * 4 3 2 6 6 C 1.50701 * 109.47107 * 270.00661 * 5 4 3 7 7 H 1.08001 * 119.99907 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99962 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99763 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00046 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47234 * 89.99449 * 10 8 6 12 12 H 1.48506 * 109.46900 * 209.99396 * 10 8 6 13 13 H 1.48498 * 109.46988 * 329.99266 * 10 8 6 14 14 C 1.34773 * 120.00451 * 94.81631 * 4 3 2 15 15 O 1.21284 * 119.99672 * 5.06803 * 14 4 3 16 16 C 1.50702 * 120.00433 * 185.07586 * 14 4 3 17 17 H 1.08996 * 109.45757 * 31.64123 * 16 14 4 18 18 C 1.53031 * 109.45445 * 271.66736 * 16 14 4 19 19 C 1.53113 * 109.28030 * 180.81055 * 18 16 14 20 20 C 1.53123 * 109.16239 * 57.64880 * 19 18 16 21 21 C 1.53026 * 109.28056 * 302.35007 * 20 19 18 22 22 N 1.46847 * 109.46065 * 151.61633 * 16 14 4 23 23 C 1.46894 * 111.00501 * 305.84374 * 22 16 14 24 24 H 1.08003 * 119.99777 * 359.97438 * 1 2 3 25 25 H 1.07996 * 120.00388 * 180.02562 * 1 2 3 26 26 H 1.08000 * 119.99846 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.47578 * 5.64362 * 3 2 1 28 28 H 1.08996 * 109.47274 * 245.63688 * 3 2 1 29 29 H 1.09000 * 109.46628 * 29.99905 * 5 4 3 30 30 H 1.08994 * 109.47475 * 150.00130 * 5 4 3 31 31 H 0.96993 * 119.99814 * 180.02562 * 9 8 6 32 32 H 1.08996 * 109.50433 * 60.86708 * 18 16 14 33 33 H 1.09007 * 109.50350 * 300.74883 * 18 16 14 34 34 H 1.09005 * 109.52577 * 297.74771 * 19 18 16 35 35 H 1.08997 * 109.52844 * 177.55927 * 19 18 16 36 36 H 1.09000 * 109.49630 * 62.29165 * 20 19 18 37 37 H 1.09002 * 109.50142 * 182.40385 * 20 19 18 38 38 H 1.09003 * 109.46302 * 179.19253 * 21 20 19 39 39 H 1.09002 * 109.46606 * 299.16216 * 21 20 19 40 40 H 1.09007 * 109.47455 * 299.75006 * 23 22 16 41 41 H 1.09000 * 109.47099 * 59.74571 * 23 22 16 42 42 H 1.08997 * 109.47770 * 179.74729 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0047 1.3255 1.1225 5 6 2.5533 1.7523 2.4493 6 6 2.7438 3.2405 2.5902 7 1 3.1599 3.8114 1.7732 8 6 2.3878 3.8732 3.7624 9 7 1.8816 3.1780 4.7574 10 14 2.6246 5.7179 3.9372 11 1 1.3996 6.4200 3.4773 12 1 2.8810 6.0512 5.3615 13 1 3.7816 6.1488 3.1120 14 6 4.2859 0.9519 0.9346 15 8 4.6830 0.6871 -0.1804 16 6 5.2250 0.8630 2.1098 17 1 4.6660 0.5762 3.0004 18 6 5.8855 2.2243 2.3386 19 6 6.8537 2.1243 3.5205 20 6 7.8905 1.0355 3.2301 21 6 7.1719 -0.2914 2.9755 22 7 6.2582 -0.1438 1.8353 23 6 5.6542 -1.4333 1.4745 24 1 -0.5400 0.9354 0.0004 25 1 -0.5400 -0.9352 0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3595 2.1312 0.1011 28 1 2.6122 1.4078 -0.9361 29 1 1.4979 1.5081 2.5699 30 1 3.1350 1.2375 3.2140 31 1 1.6309 3.6231 5.5818 32 1 5.1195 2.9682 2.5577 33 1 6.4334 2.5182 1.4433 34 1 6.3003 1.8685 4.4242 35 1 7.3586 3.0801 3.6599 36 1 8.4698 1.3106 2.3488 37 1 8.5569 0.9300 4.0862 38 1 7.9066 -1.0657 2.7542 39 1 6.6037 -0.5728 3.8621 40 1 5.0357 -1.7883 2.2989 41 1 5.0369 -1.3091 0.5847 42 1 6.4414 -2.1594 1.2720 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590409138.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:57 Heat of formation + Delta-G solvation = -30.360908 kcal Electronic energy + Delta-G solvation = -21774.181397 eV Core-core repulsion = 18753.879832 eV Total energy + Delta-G solvation = -3020.301565 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.44154 -39.05860 -37.10388 -35.20076 -34.40074 -33.92406 -31.97316 -29.39761 -28.05315 -27.07174 -25.05223 -24.31062 -23.67390 -21.30814 -20.62574 -19.86445 -18.51814 -18.04632 -17.53385 -16.48399 -16.37179 -16.18997 -15.72747 -15.57301 -15.29579 -14.70636 -14.62488 -14.23219 -14.08243 -13.85433 -13.60715 -13.49222 -13.06183 -12.92263 -12.78446 -12.66597 -12.60761 -12.33487 -12.27608 -12.04902 -11.73914 -11.66335 -11.60241 -11.23103 -10.67703 -10.56288 -10.21924 -9.49516 -9.26696 -8.19948 -6.32597 1.25662 1.40876 1.43788 1.52538 1.71326 2.29715 2.43995 3.02424 3.10769 3.63026 3.92135 4.00285 4.05240 4.09740 4.17553 4.22668 4.34878 4.45539 4.54618 4.55432 4.68177 4.77439 4.79096 4.84913 4.89254 4.97182 5.01016 5.05745 5.11553 5.19265 5.22447 5.36326 5.48013 5.58318 5.64631 5.73587 5.89159 5.99480 6.05414 6.16763 6.54367 6.80494 7.30271 7.41019 8.85955 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.012505 B = 0.009588 C = 0.006074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.613749 B = 2919.568738 C = 4608.775008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.180 4.180 3 C 0.140 3.860 4 N -0.597 5.597 5 C 0.256 3.744 6 C -0.536 4.536 7 H 0.053 0.947 8 C 0.028 3.972 9 N -0.917 5.917 10 Si 0.949 3.051 11 H -0.276 1.276 12 H -0.280 1.280 13 H -0.269 1.269 14 C 0.520 3.480 15 O -0.577 6.577 16 C 0.085 3.915 17 H 0.049 0.951 18 C -0.109 4.109 19 C -0.115 4.115 20 C -0.110 4.110 21 C 0.054 3.946 22 N -0.535 5.535 23 C 0.023 3.977 24 H 0.103 0.897 25 H 0.119 0.881 26 H 0.100 0.900 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.019 0.981 30 H 0.025 0.975 31 H 0.267 0.733 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.030 0.970 40 H 0.020 0.980 41 H 0.055 0.945 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.586 -5.747 -1.905 8.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.199 4.199 3 C 0.017 3.983 4 N -0.327 5.327 5 C 0.135 3.865 6 C -0.575 4.575 7 H 0.071 0.929 8 C -0.173 4.173 9 N -0.556 5.556 10 Si 0.775 3.225 11 H -0.202 1.202 12 H -0.205 1.205 13 H -0.193 1.193 14 C 0.308 3.692 15 O -0.458 6.458 16 C -0.026 4.026 17 H 0.067 0.933 18 C -0.147 4.147 19 C -0.152 4.152 20 C -0.148 4.148 21 C -0.073 4.073 22 N -0.260 5.260 23 C -0.125 4.125 24 H 0.121 0.879 25 H 0.137 0.863 26 H 0.118 0.882 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.037 0.963 30 H 0.043 0.957 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.111 0.889 38 H 0.117 0.883 39 H 0.048 0.952 40 H 0.039 0.961 41 H 0.074 0.926 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.981 -5.698 -2.687 8.687 hybrid contribution -0.876 0.694 0.924 1.450 sum 5.105 -5.004 -1.763 7.363 Atomic orbital electron populations 1.24020 0.94969 1.03084 0.98185 1.23170 0.96787 0.97861 1.02103 1.20492 0.91779 0.96101 0.89890 1.48258 1.08871 1.63610 1.11962 1.19081 0.94857 0.94346 0.78218 1.21531 1.42553 0.93341 1.00047 0.92882 1.25560 0.94422 1.02132 0.95211 1.70009 1.42840 1.37493 1.05284 0.85680 0.78746 0.80612 0.77488 1.20189 1.20544 1.19315 1.20648 0.82458 0.75851 0.90241 1.90551 1.76784 1.52272 1.26210 1.21438 0.91534 0.95581 0.94055 0.93296 1.21576 0.99399 0.94445 0.99306 1.21540 0.96789 1.00278 0.96622 1.21604 0.97336 0.93295 1.02540 1.22256 0.95318 0.99282 0.90423 1.61721 1.18112 1.07378 1.38824 1.22428 0.99809 0.90476 0.99738 0.87873 0.86264 0.88238 0.90227 0.90494 0.96325 0.95736 0.92343 0.90555 0.92491 0.92742 0.90406 0.91217 0.88855 0.88349 0.95152 0.96129 0.92646 0.89020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.56 14.32 67.78 0.97 -3.59 16 2 C -0.18 -5.96 9.84 25.65 0.25 -5.71 16 3 C 0.14 5.38 5.94 85.63 0.51 5.89 16 4 N -0.60 -26.08 2.44 -830.50 -2.03 -28.10 16 5 C 0.26 12.35 5.03 85.63 0.43 12.78 16 6 C -0.54 -27.44 7.27 25.60 0.19 -27.26 16 7 H 0.05 2.78 7.77 -2.91 -0.02 2.76 16 8 C 0.03 1.42 5.46 84.65 0.46 1.88 16 9 N -0.92 -49.66 13.29 21.45 0.28 -49.37 16 10 Si 0.95 41.11 29.54 68.60 2.03 43.14 16 11 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 12 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 13 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 14 C 0.52 22.77 5.80 87.66 0.51 23.28 16 15 O -0.58 -27.19 14.62 -3.04 -0.04 -27.23 16 16 C 0.09 3.37 1.56 44.19 0.07 3.44 16 17 H 0.05 2.10 6.03 -2.39 -0.01 2.08 16 18 C -0.11 -4.19 5.35 30.64 0.16 -4.02 16 19 C -0.11 -3.52 6.00 30.67 0.18 -3.33 16 20 C -0.11 -2.75 6.09 30.64 0.19 -2.57 16 21 C 0.05 1.46 5.46 86.32 0.47 1.93 16 22 N -0.53 -18.31 4.51 -901.62 -4.06 -22.37 16 23 C 0.02 0.74 9.13 127.69 1.17 1.91 16 24 H 0.10 2.75 7.84 -2.91 -0.02 2.73 16 25 H 0.12 2.68 8.06 -2.91 -0.02 2.66 16 26 H 0.10 3.32 8.06 -2.91 -0.02 3.30 16 27 H 0.08 3.02 7.76 -2.39 -0.02 3.00 16 28 H 0.08 3.02 7.22 -2.39 -0.02 3.00 16 29 H 0.02 0.96 8.07 -2.39 -0.02 0.94 16 30 H 0.02 1.26 5.75 -2.39 -0.01 1.24 16 31 H 0.27 13.75 8.31 -92.71 -0.77 12.98 16 32 H 0.08 3.36 5.77 -2.39 -0.01 3.34 16 33 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 34 H 0.05 1.75 8.14 -2.38 -0.02 1.74 16 35 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.10 2.14 8.09 -2.39 -0.02 2.12 16 39 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.02 0.62 8.14 -2.38 -0.02 0.61 16 41 H 0.05 2.03 5.94 -2.39 -0.01 2.02 16 42 H 0.09 2.34 8.10 -2.39 -0.02 2.32 16 Total: -1.00 -59.51 332.73 2.71 -56.80 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: 0.97 Total: 22.52 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: 5.56 Total: 4.62 kcal Atomic # 7 Polarization: -94.04 SS G_CDS: -5.81 Total: -99.85 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -0.04 Total: -27.23 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Total: -59.51 2.71 -56.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590409138.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.443 kcal (2) G-P(sol) polarization free energy of solvation -59.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds