Wall clock time and date at job start Mon Mar 30 2020 00:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.46639 * 2 1 4 4 C 1.36943 * 120.00388 * 85.31408 * 3 2 1 5 5 H 1.07997 * 120.00164 * 209.55393 * 4 3 2 6 6 C 1.38814 * 119.99559 * 29.54835 * 4 3 2 7 7 N 1.31621 * 120.00181 * 40.75653 * 6 4 3 8 8 Si 1.86799 * 119.99918 * 220.75365 * 6 4 3 9 9 H 1.48498 * 109.46952 * 179.97438 * 8 6 4 10 10 H 1.48493 * 109.47123 * 299.99965 * 8 6 4 11 11 H 1.48502 * 109.47155 * 60.00390 * 8 6 4 12 12 C 1.46503 * 120.00079 * 265.31008 * 3 2 1 13 13 H 1.08995 * 109.35856 * 0.02562 * 12 3 2 14 14 C 1.53071 * 109.36146 * 240.27566 * 12 3 2 15 15 C 1.53638 * 108.24351 * 191.18442 * 14 12 3 16 16 H 1.09000 * 109.95806 * 188.41421 * 15 14 12 17 17 C 1.53113 * 108.49600 * 308.69360 * 15 14 12 18 18 C 1.52901 * 109.77814 * 176.57234 * 17 15 14 19 19 C 1.53069 * 109.25234 * 299.37368 * 18 17 15 20 20 C 1.52975 * 109.14746 * 60.92537 * 19 18 17 21 21 C 1.52468 * 109.95517 * 300.38943 * 20 19 18 22 22 H 1.09001 * 108.22860 * 176.61981 * 21 20 19 23 23 N 1.45472 * 111.04145 * 294.63758 * 21 20 19 24 24 C 1.33331 * 123.63163 * 143.93238 * 23 21 20 25 25 O 1.21287 * 118.12297 * 177.33783 * 24 23 21 26 26 H 1.09004 * 109.47277 * 299.99564 * 1 2 3 27 27 H 1.08999 * 109.47381 * 59.99918 * 1 2 3 28 28 H 1.09007 * 109.46974 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47494 * 240.00482 * 2 1 3 30 30 H 1.09004 * 109.47350 * 119.99579 * 2 1 3 31 31 H 0.96999 * 119.99823 * 5.82759 * 7 6 4 32 32 H 1.08999 * 109.70690 * 310.87323 * 14 12 3 33 33 H 1.08999 * 109.70688 * 71.45317 * 14 12 3 34 34 H 1.08997 * 109.41728 * 296.66777 * 17 15 14 35 35 H 1.08997 * 109.41518 * 56.54046 * 17 15 14 36 36 H 1.09004 * 109.51118 * 59.31375 * 18 17 15 37 37 H 1.08999 * 109.50359 * 179.39848 * 18 17 15 38 38 H 1.09000 * 109.52715 * 180.82664 * 19 18 17 39 39 H 1.09002 * 109.52564 * 300.96243 * 19 18 17 40 40 H 1.09003 * 109.39198 * 60.53512 * 20 19 18 41 41 H 1.09005 * 109.39167 * 180.33661 * 20 19 18 42 42 H 0.97004 * 118.15095 * 323.81059 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1551 2.0592 1.1820 5 1 2.0417 3.1329 1.2049 6 6 2.4394 1.3661 2.3506 7 7 3.3051 0.3748 2.3338 8 14 1.5936 1.8405 3.9471 9 1 2.0662 0.9534 5.0402 10 1 1.9176 3.2512 4.2788 11 1 0.1241 1.6935 3.7915 12 6 2.3601 2.0373 -1.2645 13 1 2.1869 1.3456 -2.0888 14 6 3.8361 2.4425 -1.2431 15 6 4.0985 3.3668 -2.4420 16 1 5.1679 3.5529 -2.5412 17 6 3.5675 2.6853 -3.7061 18 6 3.7368 3.6173 -4.9063 19 6 2.9412 4.9023 -4.6637 20 6 3.4814 5.5984 -3.4132 21 6 3.3492 4.6761 -2.2063 22 1 3.7959 5.1744 -1.3459 23 7 1.9514 4.4219 -1.8938 24 6 1.4960 3.2521 -1.4446 25 8 0.3181 3.1648 -1.1690 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8068 0.1827 1.5262 32 1 4.0589 2.9706 -0.3160 33 1 4.4624 1.5536 -1.3194 34 1 4.1227 1.7639 -3.8815 35 1 2.5107 2.4524 -3.5755 36 1 4.7919 3.8607 -5.0323 37 1 3.3673 3.1239 -5.8052 38 1 3.0470 5.5641 -5.5234 39 1 1.8889 4.6575 -4.5197 40 1 4.5314 5.8492 -3.5636 41 1 2.9135 6.5112 -3.2333 42 1 1.3160 5.1444 -2.0176 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595302910.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:17 Heat of formation + Delta-G solvation = -31.992041 kcal Electronic energy + Delta-G solvation = -22280.982599 eV Core-core repulsion = 19260.610302 eV Total energy + Delta-G solvation = -3020.372297 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.56866 -37.59897 -35.95928 -33.69912 -33.00642 -31.26367 -29.71713 -29.41768 -26.85975 -24.42453 -23.35351 -22.57803 -21.69367 -20.54329 -20.28998 -18.22089 -16.63946 -16.31844 -15.71112 -15.35506 -15.18010 -14.17474 -14.13340 -13.73310 -13.51352 -13.36438 -13.22922 -12.86432 -12.54554 -12.29445 -12.13080 -12.03504 -11.60942 -11.34833 -11.04344 -10.92239 -10.72786 -10.66338 -10.55200 -10.17201 -10.06902 -10.02787 -9.95566 -9.82097 -9.46011 -8.93264 -8.44393 -8.17645 -6.86081 -6.13623 -3.17008 3.47501 3.54015 3.61627 3.77941 3.85212 4.60250 4.66172 4.72635 4.78860 5.13215 5.16189 5.19706 5.32579 5.39782 5.46748 5.48178 5.60549 5.62592 5.73657 5.89793 5.93169 5.94422 6.09565 6.15356 6.20478 6.23636 6.24581 6.28459 6.47735 6.57713 6.61584 6.70624 6.81430 6.95817 7.24681 7.39644 7.47772 7.99472 8.15048 8.57860 9.05135 9.10094 9.84561 10.29320 11.09466 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.026579 B = 0.006597 C = 0.006416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.214214 B = 4243.542445 C = 4362.708430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.137 3.863 3 N -0.566 5.566 4 C -0.358 4.358 5 H 0.047 0.953 6 C -0.004 4.004 7 N -0.881 5.881 8 Si 1.039 2.961 9 H -0.287 1.287 10 H -0.293 1.293 11 H -0.292 1.292 12 C 0.168 3.832 13 H 0.078 0.922 14 C -0.124 4.124 15 C -0.095 4.095 16 H 0.083 0.917 17 C -0.119 4.119 18 C -0.117 4.117 19 C -0.118 4.118 20 C -0.126 4.126 21 C 0.151 3.849 22 H 0.061 0.939 23 N -0.721 5.721 24 C 0.510 3.490 25 O -0.546 6.546 26 H 0.053 0.947 27 H 0.042 0.958 28 H 0.031 0.969 29 H 0.027 0.973 30 H 0.073 0.927 31 H 0.270 0.730 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.504 6.643 -13.600 15.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.012 3.988 3 N -0.286 5.286 4 C -0.486 4.486 5 H 0.065 0.935 6 C -0.210 4.210 7 N -0.518 5.518 8 Si 0.869 3.131 9 H -0.213 1.213 10 H -0.220 1.220 11 H -0.220 1.220 12 C 0.056 3.944 13 H 0.096 0.904 14 C -0.164 4.164 15 C -0.114 4.114 16 H 0.101 0.899 17 C -0.156 4.156 18 C -0.155 4.155 19 C -0.156 4.156 20 C -0.164 4.164 21 C 0.045 3.955 22 H 0.079 0.921 23 N -0.375 5.375 24 C 0.295 3.705 25 O -0.421 6.421 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.050 0.950 29 H 0.045 0.955 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 2.865 5.935 -11.765 13.485 hybrid contribution -0.122 0.995 -1.619 1.904 sum 2.743 6.930 -13.384 15.319 Atomic orbital electron populations 1.22172 0.99318 0.98324 1.01831 1.20936 0.92122 0.85807 0.99952 1.43745 1.73045 1.11450 1.00402 1.19499 1.50008 0.92943 0.86117 0.93495 1.25549 0.96592 0.98156 1.00667 1.70814 1.17346 1.33785 1.29810 0.83918 0.77046 0.75508 0.76614 1.21268 1.22009 1.21975 1.20185 0.91438 0.91402 0.91369 0.90415 1.22218 0.97697 0.99077 0.97380 1.21526 0.99417 0.94528 0.95963 0.89869 1.21681 1.01874 0.98212 0.93867 1.21523 1.00056 0.95975 0.97925 1.21501 1.00283 0.96728 0.97050 1.21753 1.01868 0.98027 0.94793 1.20523 0.82619 0.95825 0.96508 0.92149 1.45684 1.09072 1.14355 1.68439 1.21675 0.89531 0.84791 0.74486 1.90640 1.18125 1.84227 1.49153 0.92756 0.93841 0.95018 0.95463 0.90890 0.92041 0.90107 0.91730 0.91747 0.91662 0.92084 0.92300 0.92299 0.91821 0.90679 0.91765 0.78169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.56 10.21 37.16 0.38 -3.18 16 2 C 0.14 3.27 5.89 -4.04 -0.02 3.25 16 3 N -0.57 -14.06 2.05 -167.24 -0.34 -14.41 16 4 C -0.36 -9.94 7.84 -15.06 -0.12 -10.06 16 5 H 0.05 1.40 7.71 -52.49 -0.40 1.00 16 6 C 0.00 -0.12 4.52 -17.43 -0.08 -0.20 16 7 N -0.88 -25.48 12.21 55.49 0.68 -24.80 16 8 Si 1.04 25.82 30.06 -169.99 -5.11 20.71 16 9 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 10 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 12 C 0.17 3.49 2.18 -69.31 -0.15 3.34 16 13 H 0.08 1.54 6.39 -51.93 -0.33 1.20 16 14 C -0.12 -2.25 5.08 -26.36 -0.13 -2.38 16 15 C -0.09 -1.29 2.72 -90.39 -0.25 -1.53 16 16 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 17 C -0.12 -1.48 4.55 -26.72 -0.12 -1.61 16 18 C -0.12 -1.19 5.92 -26.75 -0.16 -1.34 16 19 C -0.12 -1.18 5.84 -26.71 -0.16 -1.34 16 20 C -0.13 -1.27 5.54 -27.02 -0.15 -1.42 16 21 C 0.15 2.02 2.89 -68.91 -0.20 1.82 16 22 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 23 N -0.72 -11.89 4.66 -55.42 -0.26 -12.15 16 24 C 0.51 10.72 5.74 -11.89 -0.07 10.66 16 25 O -0.55 -13.77 17.49 5.55 0.10 -13.67 16 26 H 0.05 1.35 8.14 -51.93 -0.42 0.93 16 27 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.03 0.58 7.82 -51.93 -0.41 0.17 16 30 H 0.07 1.91 5.69 -51.93 -0.30 1.62 16 31 H 0.27 7.78 8.11 -40.82 -0.33 7.45 16 32 H 0.08 1.70 7.32 -51.93 -0.38 1.32 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.95 5.44 -51.93 -0.28 0.67 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.74 7.88 -51.93 -0.41 0.33 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.38 5.88 8.68 -40.82 -0.35 5.53 16 LS Contribution 319.43 15.07 4.81 4.81 Total: -1.00 -31.53 319.43 -8.41 -39.94 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -7.06 Total: 3.54 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -1.22 Total: -4.00 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: 0.08 Total: -51.35 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: 0.10 Total: -13.67 kcal Atomic # 14 Polarization: 25.82 SS G_CDS: -5.11 Total: 20.71 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.53 -8.41 -39.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595302910.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.953 kcal (2) G-P(sol) polarization free energy of solvation -31.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds