Wall clock time and date at job start Mon Mar 30 2020 00:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.46639 * 2 1 4 4 C 1.36943 * 120.00388 * 85.31408 * 3 2 1 5 5 H 1.07997 * 120.00164 * 209.55393 * 4 3 2 6 6 C 1.38814 * 119.99559 * 29.54835 * 4 3 2 7 7 N 1.31621 * 120.00181 * 40.75653 * 6 4 3 8 8 Si 1.86799 * 119.99918 * 220.75365 * 6 4 3 9 9 H 1.48498 * 109.46952 * 179.97438 * 8 6 4 10 10 H 1.48493 * 109.47123 * 299.99965 * 8 6 4 11 11 H 1.48502 * 109.47155 * 60.00390 * 8 6 4 12 12 C 1.46503 * 120.00079 * 265.31008 * 3 2 1 13 13 H 1.08995 * 109.35856 * 0.02562 * 12 3 2 14 14 C 1.53071 * 109.36146 * 240.27566 * 12 3 2 15 15 C 1.53638 * 108.24351 * 191.18442 * 14 12 3 16 16 H 1.09000 * 109.95806 * 188.41421 * 15 14 12 17 17 C 1.53113 * 108.49600 * 308.69360 * 15 14 12 18 18 C 1.52901 * 109.77814 * 176.57234 * 17 15 14 19 19 C 1.53069 * 109.25234 * 299.37368 * 18 17 15 20 20 C 1.52975 * 109.14746 * 60.92537 * 19 18 17 21 21 C 1.52468 * 109.95517 * 300.38943 * 20 19 18 22 22 H 1.09001 * 108.22860 * 176.61981 * 21 20 19 23 23 N 1.45472 * 111.04145 * 294.63758 * 21 20 19 24 24 C 1.33331 * 123.63163 * 143.93238 * 23 21 20 25 25 O 1.21287 * 118.12297 * 177.33783 * 24 23 21 26 26 H 1.09004 * 109.47277 * 299.99564 * 1 2 3 27 27 H 1.08999 * 109.47381 * 59.99918 * 1 2 3 28 28 H 1.09007 * 109.46974 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47494 * 240.00482 * 2 1 3 30 30 H 1.09004 * 109.47350 * 119.99579 * 2 1 3 31 31 H 0.96999 * 119.99823 * 5.82759 * 7 6 4 32 32 H 1.08999 * 109.70690 * 310.87323 * 14 12 3 33 33 H 1.08999 * 109.70688 * 71.45317 * 14 12 3 34 34 H 1.08997 * 109.41728 * 296.66777 * 17 15 14 35 35 H 1.08997 * 109.41518 * 56.54046 * 17 15 14 36 36 H 1.09004 * 109.51118 * 59.31375 * 18 17 15 37 37 H 1.08999 * 109.50359 * 179.39848 * 18 17 15 38 38 H 1.09000 * 109.52715 * 180.82664 * 19 18 17 39 39 H 1.09002 * 109.52564 * 300.96243 * 19 18 17 40 40 H 1.09003 * 109.39198 * 60.53512 * 20 19 18 41 41 H 1.09005 * 109.39167 * 180.33661 * 20 19 18 42 42 H 0.97004 * 118.15095 * 323.81059 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1551 2.0592 1.1820 5 1 2.0417 3.1329 1.2049 6 6 2.4394 1.3661 2.3506 7 7 3.3051 0.3748 2.3338 8 14 1.5936 1.8405 3.9471 9 1 2.0662 0.9534 5.0402 10 1 1.9176 3.2512 4.2788 11 1 0.1241 1.6935 3.7915 12 6 2.3601 2.0373 -1.2645 13 1 2.1869 1.3456 -2.0888 14 6 3.8361 2.4425 -1.2431 15 6 4.0985 3.3668 -2.4420 16 1 5.1679 3.5529 -2.5412 17 6 3.5675 2.6853 -3.7061 18 6 3.7368 3.6173 -4.9063 19 6 2.9412 4.9023 -4.6637 20 6 3.4814 5.5984 -3.4132 21 6 3.3492 4.6761 -2.2063 22 1 3.7959 5.1744 -1.3459 23 7 1.9514 4.4219 -1.8938 24 6 1.4960 3.2521 -1.4446 25 8 0.3181 3.1648 -1.1690 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8068 0.1827 1.5262 32 1 4.0589 2.9706 -0.3160 33 1 4.4624 1.5536 -1.3194 34 1 4.1227 1.7639 -3.8815 35 1 2.5107 2.4524 -3.5755 36 1 4.7919 3.8607 -5.0323 37 1 3.3673 3.1239 -5.8052 38 1 3.0470 5.5641 -5.5234 39 1 1.8889 4.6575 -4.5197 40 1 4.5314 5.8492 -3.5636 41 1 2.9135 6.5112 -3.2333 42 1 1.3160 5.1444 -2.0176 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595302910.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:17 Heat of formation + Delta-G solvation = -52.002514 kcal Electronic energy + Delta-G solvation = -22281.850318 eV Core-core repulsion = 19260.610302 eV Total energy + Delta-G solvation = -3021.240016 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.95043 -39.02053 -37.83874 -34.95525 -34.49130 -33.23545 -31.22537 -30.63111 -28.51346 -26.15055 -25.04276 -23.66515 -23.02413 -22.33240 -21.45964 -19.87381 -18.43463 -17.75960 -17.09162 -16.94170 -16.49684 -15.90388 -15.56577 -15.29003 -15.06569 -14.82501 -14.62506 -14.40353 -14.03854 -13.89706 -13.39903 -13.21142 -12.94327 -12.91369 -12.65012 -12.51043 -12.38554 -12.17799 -11.98000 -11.95350 -11.69918 -11.51403 -11.36840 -11.13042 -11.09301 -10.57435 -10.28113 -9.85558 -8.91018 -8.30490 -5.32854 1.51188 1.58511 1.77696 1.81401 2.45452 2.61340 3.05841 3.44619 3.64043 3.77769 3.83438 3.95488 4.17290 4.19895 4.31188 4.36436 4.40319 4.49758 4.55400 4.57662 4.68650 4.74433 4.80720 4.92456 4.94425 5.01591 5.05040 5.17093 5.21770 5.26434 5.29809 5.33048 5.38243 5.44650 5.53054 5.55879 5.92909 6.04673 6.38310 6.48204 7.04461 7.44700 7.76412 8.21228 8.88808 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.026579 B = 0.006597 C = 0.006416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.214214 B = 4243.542445 C = 4362.708430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.135 3.865 3 N -0.581 5.581 4 C -0.353 4.353 5 H 0.019 0.981 6 C -0.043 4.043 7 N -0.897 5.897 8 Si 1.078 2.922 9 H -0.283 1.283 10 H -0.281 1.281 11 H -0.295 1.295 12 C 0.163 3.837 13 H 0.088 0.912 14 C -0.114 4.114 15 C -0.086 4.086 16 H 0.113 0.887 17 C -0.117 4.117 18 C -0.112 4.112 19 C -0.118 4.118 20 C -0.117 4.117 21 C 0.143 3.857 22 H 0.057 0.943 23 N -0.707 5.707 24 C 0.507 3.493 25 O -0.598 6.598 26 H 0.022 0.978 27 H 0.038 0.962 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.261 0.739 32 H 0.046 0.954 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.038 0.962 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.042 0.958 40 H 0.102 0.898 41 H 0.074 0.926 42 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.699 7.749 -15.607 18.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.009 3.991 3 N -0.302 5.302 4 C -0.482 4.482 5 H 0.037 0.963 6 C -0.245 4.245 7 N -0.535 5.535 8 Si 0.905 3.095 9 H -0.208 1.208 10 H -0.207 1.207 11 H -0.223 1.223 12 C 0.052 3.948 13 H 0.106 0.894 14 C -0.153 4.153 15 C -0.105 4.105 16 H 0.131 0.869 17 C -0.155 4.155 18 C -0.149 4.149 19 C -0.155 4.155 20 C -0.155 4.155 21 C 0.038 3.962 22 H 0.075 0.925 23 N -0.359 5.359 24 C 0.293 3.707 25 O -0.478 6.478 26 H 0.041 0.959 27 H 0.057 0.943 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.057 0.943 36 H 0.101 0.899 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.061 0.939 40 H 0.120 0.880 41 H 0.093 0.907 42 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 4.104 7.088 -13.815 16.060 hybrid contribution -0.488 0.680 -1.079 1.366 sum 3.616 7.768 -14.893 17.182 Atomic orbital electron populations 1.22027 0.98534 0.99813 0.99932 1.20953 0.92703 0.85525 0.99897 1.43856 1.73623 1.11814 1.00928 1.19351 1.49185 0.91855 0.87781 0.96343 1.26437 0.96843 0.98341 1.02882 1.70897 1.18385 1.34846 1.29386 0.83362 0.75904 0.75972 0.74285 1.20811 1.20697 1.22286 1.20399 0.93007 0.91503 0.89859 0.89398 1.22042 0.95439 0.99747 0.98080 1.21536 1.01320 0.93406 0.94229 0.86856 1.21653 1.00156 0.99284 0.94382 1.21508 1.01434 0.95284 0.96711 1.21515 0.98991 0.97189 0.97839 1.21731 1.03801 0.97231 0.92713 1.20851 0.80294 0.96617 0.98396 0.92493 1.45578 1.10848 1.13023 1.66430 1.21590 0.88698 0.86047 0.74342 1.90610 1.20018 1.85338 1.51850 0.95855 0.94329 0.91792 0.92988 0.93340 0.93013 0.93560 0.91801 0.90974 0.94286 0.89947 0.91502 0.89959 0.93907 0.87997 0.90709 0.77319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.57 10.21 71.98 0.74 -5.84 16 2 C 0.13 6.50 5.89 86.38 0.51 7.01 16 3 N -0.58 -29.61 2.05 -683.03 -1.40 -31.02 16 4 C -0.35 -20.24 7.84 84.03 0.66 -19.58 16 5 H 0.02 1.16 7.71 -2.91 -0.02 1.14 16 6 C -0.04 -2.48 4.52 84.86 0.38 -2.10 16 7 N -0.90 -52.93 12.21 21.65 0.26 -52.67 16 8 Si 1.08 53.22 30.06 68.60 2.06 55.28 16 9 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 10 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 11 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 12 C 0.16 6.87 2.18 44.10 0.10 6.97 16 13 H 0.09 3.49 6.39 -2.39 -0.02 3.47 16 14 C -0.11 -4.10 5.08 30.83 0.16 -3.94 16 15 C -0.09 -2.14 2.72 -10.64 -0.03 -2.17 16 16 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 17 C -0.12 -2.64 4.55 30.60 0.14 -2.50 16 18 C -0.11 -1.82 5.92 30.58 0.18 -1.64 16 19 C -0.12 -1.92 5.84 30.61 0.18 -1.75 16 20 C -0.12 -1.90 5.54 30.41 0.17 -1.73 16 21 C 0.14 3.53 2.89 44.91 0.13 3.66 16 22 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 23 N -0.71 -23.00 4.66 -448.45 -2.09 -25.09 16 24 C 0.51 21.73 5.74 87.71 0.50 22.23 16 25 O -0.60 -31.11 17.49 -3.05 -0.05 -31.16 16 26 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.04 1.76 8.14 -2.39 -0.02 1.75 16 28 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 29 H 0.05 2.20 7.82 -2.39 -0.02 2.18 16 30 H 0.05 2.60 5.69 -2.39 -0.01 2.58 16 31 H 0.26 15.44 8.11 -92.71 -0.75 14.68 16 32 H 0.05 1.99 7.32 -2.39 -0.02 1.97 16 33 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.04 1.09 5.44 -2.39 -0.01 1.07 16 36 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 37 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.04 0.89 7.88 -2.39 -0.02 0.87 16 40 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 42 H 0.39 11.80 8.68 -92.70 -0.80 11.00 16 Total: -1.00 -71.14 319.43 2.80 -68.33 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: 0.21 Total: 17.69 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: 3.81 Total: -1.38 kcal Atomic # 7 Polarization: -105.54 SS G_CDS: -3.23 Total: -108.77 kcal Atomic # 8 Polarization: -31.11 SS G_CDS: -0.05 Total: -31.16 kcal Atomic # 14 Polarization: 53.22 SS G_CDS: 2.06 Total: 55.28 kcal Total: -71.14 2.80 -68.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595302910.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.332 kcal (2) G-P(sol) polarization free energy of solvation -71.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds