Wall clock time and date at job start Mon Mar 30 2020 00:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.47247 * 2 1 4 4 C 1.36943 * 120.00268 * 265.78592 * 3 2 1 5 5 H 1.08001 * 120.00299 * 146.36408 * 4 3 2 6 6 C 1.38813 * 119.99864 * 326.36761 * 4 3 2 7 7 N 1.31621 * 120.00232 * 337.53211 * 6 4 3 8 8 Si 1.86797 * 120.00140 * 157.53089 * 6 4 3 9 9 H 1.48500 * 109.47115 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47184 * 119.99726 * 8 6 4 11 11 H 1.48497 * 109.46982 * 239.99996 * 8 6 4 12 12 C 1.46497 * 120.00145 * 85.78697 * 3 2 1 13 13 H 1.09000 * 109.30000 * 0.02562 * 12 3 2 14 14 C 1.53178 * 109.14444 * 240.50347 * 12 3 2 15 15 C 1.52928 * 108.20735 * 192.89420 * 14 12 3 16 16 H 1.09000 * 109.41095 * 307.97139 * 15 14 12 17 17 C 1.52768 * 110.79828 * 187.23371 * 15 14 12 18 18 C 1.53193 * 108.86775 * 179.46594 * 17 15 14 19 19 C 1.52895 * 109.96053 * 59.42914 * 18 17 15 20 20 C 1.53641 * 109.23007 * 300.55835 * 19 18 17 21 21 C 1.52708 * 108.66770 * 60.72185 * 20 19 18 22 22 H 1.09001 * 108.75672 * 55.79717 * 21 20 19 23 23 N 1.45371 * 111.69284 * 175.85463 * 21 20 19 24 24 C 1.33638 * 123.18693 * 143.21872 * 23 21 20 25 25 O 1.21285 * 118.04395 * 176.24902 * 24 23 21 26 26 H 1.09000 * 109.46777 * 299.99981 * 1 2 3 27 27 H 1.09001 * 109.47098 * 59.99754 * 1 2 3 28 28 H 1.08995 * 109.47424 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47161 * 240.00524 * 2 1 3 30 30 H 1.08994 * 109.47755 * 120.00240 * 2 1 3 31 31 H 0.96999 * 120.00625 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.71659 * 312.59361 * 14 12 3 33 33 H 1.09006 * 109.71295 * 73.22815 * 14 12 3 34 34 H 1.08998 * 109.56585 * 299.28071 * 17 15 14 35 35 H 1.08994 * 109.56706 * 59.65009 * 17 15 14 36 36 H 1.09003 * 109.38607 * 179.57633 * 18 17 15 37 37 H 1.08999 * 109.39295 * 299.37556 * 18 17 15 38 38 H 1.09000 * 109.38906 * 61.22283 * 19 18 17 39 39 H 1.08999 * 109.39063 * 180.92522 * 19 18 17 40 40 H 1.08995 * 110.46201 * 300.49474 * 20 19 18 41 41 H 1.09006 * 108.89730 * 180.02562 * 20 19 18 42 42 H 0.96994 * 118.40573 * 323.23786 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3288 1.9977 -1.1827 5 1 2.1619 3.0584 -1.2989 6 6 2.8579 1.2594 -2.2324 7 7 3.4671 0.1176 -1.9924 8 14 2.7052 1.8861 -3.9854 9 1 1.9819 3.1830 -3.9862 10 1 4.0600 2.0740 -4.5637 11 1 1.9518 0.8992 -4.8000 12 6 2.1746 2.1029 1.2653 13 1 1.8809 1.4529 2.0894 14 6 1.2743 3.3421 1.2513 15 6 1.6837 4.2433 2.4171 16 1 1.6970 3.6605 3.3381 17 6 0.7098 5.4105 2.5683 18 6 1.1524 6.2747 3.7532 19 6 2.5676 6.8020 3.5148 20 6 3.5287 5.6149 3.3486 21 6 3.0844 4.7915 2.1418 22 1 3.0399 5.4438 1.2696 23 7 4.0069 3.7026 1.8651 24 6 3.6118 2.5004 1.4355 25 8 4.4656 1.6817 1.1676 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 3.8372 -0.3982 -2.7258 32 1 1.4004 3.8776 0.3103 33 1 0.2330 3.0414 1.3672 34 1 0.7139 6.0096 1.6577 35 1 -0.2940 5.0271 2.7508 36 1 0.4671 7.1150 3.8642 37 1 1.1399 5.6749 4.6633 38 1 2.5767 7.4214 2.6179 39 1 2.8793 7.4016 4.3701 40 1 3.5192 4.9891 4.2410 41 1 4.5356 5.9968 3.1795 42 1 4.9552 3.8560 1.9991 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595302911.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:21 Heat of formation + Delta-G solvation = -33.472928 kcal Electronic energy + Delta-G solvation = -21922.555099 eV Core-core repulsion = 18902.118586 eV Total energy + Delta-G solvation = -3020.436513 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.13174 -37.67407 -35.72486 -33.92002 -32.71943 -31.24473 -29.80478 -28.94821 -27.26292 -24.47922 -22.79546 -22.39905 -21.87805 -20.54733 -19.79683 -18.66899 -16.60046 -16.08083 -15.64381 -15.10151 -14.54091 -14.41817 -14.11023 -13.94007 -13.74782 -13.25553 -13.00299 -12.73139 -12.34629 -12.26459 -11.97117 -11.75459 -11.35389 -11.30003 -11.25360 -11.04466 -10.83875 -10.63429 -10.57108 -10.41434 -10.21486 -10.02305 -9.95663 -9.76061 -9.46928 -8.74797 -8.32581 -8.28118 -6.54137 -5.69193 -3.25286 3.39195 3.47305 3.49421 3.72102 3.96980 4.51894 4.68157 4.70234 4.88222 5.13356 5.21305 5.35112 5.38712 5.44467 5.46987 5.53511 5.61140 5.69993 5.78854 5.94072 5.99232 6.05490 6.09217 6.16793 6.23048 6.23954 6.29277 6.35514 6.48276 6.59714 6.59957 6.75563 6.90481 6.94825 7.32054 7.60655 7.83161 7.87127 8.19167 8.55751 9.23565 9.30512 9.86493 10.42361 11.30767 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.022331 B = 0.006420 C = 0.006217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.559179 B = 4360.445678 C = 4502.767706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.140 3.860 3 N -0.556 5.556 4 C -0.262 4.262 5 H 0.063 0.937 6 C 0.015 3.985 7 N -0.871 5.871 8 Si 0.894 3.106 9 H -0.276 1.276 10 H -0.291 1.291 11 H -0.287 1.287 12 C 0.163 3.837 13 H 0.075 0.925 14 C -0.124 4.124 15 C -0.097 4.097 16 H 0.071 0.929 17 C -0.109 4.109 18 C -0.121 4.121 19 C -0.114 4.114 20 C -0.128 4.128 21 C 0.151 3.849 22 H 0.061 0.939 23 N -0.732 5.732 24 C 0.504 3.496 25 O -0.526 6.526 26 H 0.032 0.968 27 H 0.049 0.951 28 H 0.034 0.966 29 H 0.101 0.899 30 H 0.021 0.979 31 H 0.252 0.748 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.404 11.209 11.238 16.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.015 3.985 3 N -0.275 5.275 4 C -0.392 4.392 5 H 0.080 0.920 6 C -0.186 4.186 7 N -0.512 5.512 8 Si 0.724 3.276 9 H -0.201 1.201 10 H -0.218 1.218 11 H -0.214 1.214 12 C 0.051 3.949 13 H 0.093 0.907 14 C -0.164 4.164 15 C -0.116 4.116 16 H 0.090 0.910 17 C -0.147 4.147 18 C -0.159 4.159 19 C -0.153 4.153 20 C -0.166 4.166 21 C 0.045 3.955 22 H 0.079 0.921 23 N -0.387 5.387 24 C 0.289 3.711 25 O -0.399 6.399 26 H 0.051 0.949 27 H 0.068 0.932 28 H 0.053 0.947 29 H 0.118 0.882 30 H 0.039 0.961 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -5.097 10.516 10.903 15.983 hybrid contribution 0.454 0.491 -0.879 1.104 sum -4.644 11.008 10.024 15.596 Atomic orbital electron populations 1.22327 1.00695 0.98727 1.00371 1.21005 0.89649 0.85715 1.02181 1.43814 1.72675 1.11581 0.99412 1.18940 1.37221 0.93928 0.89098 0.91989 1.25139 0.96542 0.97883 0.99045 1.70074 1.35286 1.15522 1.30282 0.86372 0.77370 0.78446 0.85450 1.20142 1.21775 1.21403 1.20418 0.88694 0.93736 0.92019 0.90711 1.22122 0.99853 0.96628 0.97751 1.21403 0.93744 0.96641 0.99842 0.91047 1.21511 0.98579 0.96199 0.98367 1.21591 0.96294 0.99297 0.98692 1.21568 0.94903 0.97043 1.01738 1.21939 0.99151 0.96943 0.98556 1.20625 0.89746 0.88460 0.96713 0.92142 1.45840 1.09468 1.13113 1.70234 1.21829 0.93953 0.80493 0.74827 1.90709 1.52778 1.49232 1.47165 0.94911 0.93166 0.94654 0.88177 0.96071 0.93743 0.90650 0.91676 0.91645 0.91502 0.92176 0.92058 0.91692 0.92011 0.91308 0.91895 0.78300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.25 10.24 37.16 0.38 -2.87 16 2 C 0.14 3.42 5.92 -4.04 -0.02 3.39 16 3 N -0.56 -13.98 2.14 -167.22 -0.36 -14.33 16 4 C -0.26 -7.22 8.52 -15.06 -0.13 -7.35 16 5 H 0.06 1.70 6.65 -52.49 -0.35 1.35 16 6 C 0.02 0.44 4.93 -17.43 -0.09 0.35 16 7 N -0.87 -26.25 11.32 55.49 0.63 -25.62 16 8 Si 0.89 22.08 29.61 -169.99 -5.03 17.04 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 C 0.16 3.49 2.82 -69.29 -0.20 3.29 16 13 H 0.07 1.53 7.84 -51.93 -0.41 1.12 16 14 C -0.12 -2.14 4.85 -26.68 -0.13 -2.27 16 15 C -0.10 -1.31 1.91 -90.82 -0.17 -1.48 16 16 H 0.07 0.96 8.11 -51.93 -0.42 0.54 16 17 C -0.11 -1.17 5.32 -26.75 -0.14 -1.31 16 18 C -0.12 -1.09 5.88 -26.69 -0.16 -1.24 16 19 C -0.11 -1.02 5.95 -26.45 -0.16 -1.18 16 20 C -0.13 -1.36 5.57 -26.55 -0.15 -1.50 16 21 C 0.15 2.09 2.74 -68.73 -0.19 1.90 16 22 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 23 N -0.73 -12.95 5.23 -55.21 -0.29 -13.24 16 24 C 0.50 11.40 6.83 -11.79 -0.08 11.32 16 25 O -0.53 -14.72 17.50 5.55 0.10 -14.63 16 26 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.10 2.77 5.31 -51.92 -0.28 2.50 16 30 H 0.02 0.51 8.01 -51.93 -0.42 0.09 16 31 H 0.25 7.31 8.31 -40.82 -0.34 6.98 16 32 H 0.07 1.45 6.54 -51.93 -0.34 1.11 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.38 6.37 8.72 -40.82 -0.36 6.02 16 LS Contribution 323.92 15.07 4.88 4.88 Total: -1.00 -32.89 323.92 -8.50 -41.39 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -7.19 Total: 3.46 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -1.23 Total: 1.06 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: -0.02 Total: -53.20 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: 0.10 Total: -14.63 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.04 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.89 -8.50 -41.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595302911.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.914 kcal (2) G-P(sol) polarization free energy of solvation -32.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds