Wall clock time and date at job start Mon Mar 30 2020 00:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.47247 * 2 1 4 4 C 1.36943 * 120.00268 * 265.78592 * 3 2 1 5 5 H 1.08001 * 120.00299 * 146.36408 * 4 3 2 6 6 C 1.38813 * 119.99864 * 326.36761 * 4 3 2 7 7 N 1.31621 * 120.00232 * 337.53211 * 6 4 3 8 8 Si 1.86797 * 120.00140 * 157.53089 * 6 4 3 9 9 H 1.48500 * 109.47115 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47184 * 119.99726 * 8 6 4 11 11 H 1.48497 * 109.46982 * 239.99996 * 8 6 4 12 12 C 1.46497 * 120.00145 * 85.78697 * 3 2 1 13 13 H 1.09000 * 109.30000 * 0.02562 * 12 3 2 14 14 C 1.53178 * 109.14444 * 240.50347 * 12 3 2 15 15 C 1.52928 * 108.20735 * 192.89420 * 14 12 3 16 16 H 1.09000 * 109.41095 * 307.97139 * 15 14 12 17 17 C 1.52768 * 110.79828 * 187.23371 * 15 14 12 18 18 C 1.53193 * 108.86775 * 179.46594 * 17 15 14 19 19 C 1.52895 * 109.96053 * 59.42914 * 18 17 15 20 20 C 1.53641 * 109.23007 * 300.55835 * 19 18 17 21 21 C 1.52708 * 108.66770 * 60.72185 * 20 19 18 22 22 H 1.09001 * 108.75672 * 55.79717 * 21 20 19 23 23 N 1.45371 * 111.69284 * 175.85463 * 21 20 19 24 24 C 1.33638 * 123.18693 * 143.21872 * 23 21 20 25 25 O 1.21285 * 118.04395 * 176.24902 * 24 23 21 26 26 H 1.09000 * 109.46777 * 299.99981 * 1 2 3 27 27 H 1.09001 * 109.47098 * 59.99754 * 1 2 3 28 28 H 1.08995 * 109.47424 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47161 * 240.00524 * 2 1 3 30 30 H 1.08994 * 109.47755 * 120.00240 * 2 1 3 31 31 H 0.96999 * 120.00625 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.71659 * 312.59361 * 14 12 3 33 33 H 1.09006 * 109.71295 * 73.22815 * 14 12 3 34 34 H 1.08998 * 109.56585 * 299.28071 * 17 15 14 35 35 H 1.08994 * 109.56706 * 59.65009 * 17 15 14 36 36 H 1.09003 * 109.38607 * 179.57633 * 18 17 15 37 37 H 1.08999 * 109.39295 * 299.37556 * 18 17 15 38 38 H 1.09000 * 109.38906 * 61.22283 * 19 18 17 39 39 H 1.08999 * 109.39063 * 180.92522 * 19 18 17 40 40 H 1.08995 * 110.46201 * 300.49474 * 20 19 18 41 41 H 1.09006 * 108.89730 * 180.02562 * 20 19 18 42 42 H 0.96994 * 118.40573 * 323.23786 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3288 1.9977 -1.1827 5 1 2.1619 3.0584 -1.2989 6 6 2.8579 1.2594 -2.2324 7 7 3.4671 0.1176 -1.9924 8 14 2.7052 1.8861 -3.9854 9 1 1.9819 3.1830 -3.9862 10 1 4.0600 2.0740 -4.5637 11 1 1.9518 0.8992 -4.8000 12 6 2.1746 2.1029 1.2653 13 1 1.8809 1.4529 2.0894 14 6 1.2743 3.3421 1.2513 15 6 1.6837 4.2433 2.4171 16 1 1.6970 3.6605 3.3381 17 6 0.7098 5.4105 2.5683 18 6 1.1524 6.2747 3.7532 19 6 2.5676 6.8020 3.5148 20 6 3.5287 5.6149 3.3486 21 6 3.0844 4.7915 2.1418 22 1 3.0399 5.4438 1.2696 23 7 4.0069 3.7026 1.8651 24 6 3.6118 2.5004 1.4355 25 8 4.4656 1.6817 1.1676 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 3.8372 -0.3982 -2.7258 32 1 1.4004 3.8776 0.3103 33 1 0.2330 3.0414 1.3672 34 1 0.7139 6.0096 1.6577 35 1 -0.2940 5.0271 2.7508 36 1 0.4671 7.1150 3.8642 37 1 1.1399 5.6749 4.6633 38 1 2.5767 7.4214 2.6179 39 1 2.8793 7.4016 4.3701 40 1 3.5192 4.9891 4.2410 41 1 4.5356 5.9968 3.1795 42 1 4.9552 3.8560 1.9991 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595302911.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:20 Heat of formation + Delta-G solvation = -55.054259 kcal Electronic energy + Delta-G solvation = -21923.490936 eV Core-core repulsion = 18902.118586 eV Total energy + Delta-G solvation = -3021.372349 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.55778 -39.08419 -37.61082 -35.26445 -34.24689 -33.11704 -31.26507 -30.12791 -28.91972 -26.27366 -24.38516 -23.47000 -23.23643 -22.16822 -20.83021 -20.22683 -18.34183 -17.73172 -17.33489 -16.75999 -16.25853 -15.69065 -15.56385 -15.17484 -15.05777 -14.70187 -14.54482 -14.23302 -13.87396 -13.53198 -13.41224 -13.37910 -12.91719 -12.65633 -12.53036 -12.43015 -12.41255 -12.27838 -11.98806 -11.92162 -11.61697 -11.48549 -11.34747 -11.20198 -11.00737 -10.57131 -10.31787 -9.83027 -8.58184 -7.79920 -5.39733 1.42195 1.43735 1.54501 1.93224 2.50248 2.52667 3.27019 3.53297 3.69338 3.84596 3.93211 4.07051 4.24253 4.30498 4.46259 4.50341 4.52684 4.56175 4.61978 4.64857 4.69252 4.92958 4.95637 5.00921 5.05829 5.13634 5.15503 5.25934 5.29527 5.35327 5.39191 5.44206 5.45786 5.52782 5.65124 5.69776 5.87368 6.13400 6.42898 6.59858 7.15684 7.58014 7.84415 8.36075 9.17301 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.022331 B = 0.006420 C = 0.006217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.559179 B = 4360.445678 C = 4502.767706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.136 3.864 3 N -0.571 5.571 4 C -0.257 4.257 5 H 0.062 0.938 6 C -0.043 4.043 7 N -0.912 5.912 8 Si 0.957 3.043 9 H -0.262 1.262 10 H -0.299 1.299 11 H -0.285 1.285 12 C 0.155 3.845 13 H 0.082 0.918 14 C -0.109 4.109 15 C -0.090 4.090 16 H 0.078 0.922 17 C -0.104 4.104 18 C -0.118 4.118 19 C -0.111 4.111 20 C -0.120 4.120 21 C 0.142 3.858 22 H 0.058 0.942 23 N -0.718 5.718 24 C 0.499 3.501 25 O -0.593 6.593 26 H 0.053 0.947 27 H 0.039 0.961 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.013 0.987 31 H 0.247 0.753 32 H 0.053 0.947 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.251 13.889 12.765 20.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.010 3.990 3 N -0.291 5.291 4 C -0.387 4.387 5 H 0.079 0.921 6 C -0.241 4.241 7 N -0.555 5.555 8 Si 0.785 3.215 9 H -0.186 1.186 10 H -0.227 1.227 11 H -0.211 1.211 12 C 0.044 3.956 13 H 0.100 0.900 14 C -0.149 4.149 15 C -0.109 4.109 16 H 0.096 0.904 17 C -0.142 4.142 18 C -0.155 4.155 19 C -0.149 4.149 20 C -0.158 4.158 21 C 0.038 3.962 22 H 0.076 0.924 23 N -0.370 5.370 24 C 0.285 3.715 25 O -0.472 6.472 26 H 0.072 0.928 27 H 0.058 0.942 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.031 0.969 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -6.987 13.281 12.472 19.513 hybrid contribution 1.051 -0.295 -1.244 1.655 sum -5.936 12.986 11.228 18.165 Atomic orbital electron populations 1.22085 0.96973 1.00371 1.00819 1.20958 0.92542 0.85383 1.00084 1.43998 1.73118 1.11791 1.00168 1.19157 1.35506 0.93889 0.90158 0.92077 1.25900 0.96997 0.98419 1.02747 1.70248 1.37293 1.17140 1.30852 0.85389 0.76776 0.78462 0.80910 1.18565 1.22701 1.21124 1.20688 0.88843 0.95345 0.90677 0.89969 1.21944 0.99548 0.94946 0.98427 1.21396 0.94084 0.97262 0.98202 0.90373 1.21492 0.98162 0.95117 0.99379 1.21582 0.96533 0.99607 0.97782 1.21580 0.94360 0.96228 1.02761 1.21903 1.00180 0.97115 0.96612 1.20974 0.89470 0.87362 0.98424 0.92427 1.45750 1.10667 1.12549 1.68082 1.22040 0.93989 0.81231 0.74261 1.90680 1.54345 1.51661 1.50539 0.92778 0.94182 0.92441 0.91705 0.96882 0.94414 0.92810 0.90269 0.91809 0.90438 0.90328 0.91490 0.91499 0.90005 0.90970 0.91139 0.77694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.61 10.24 71.98 0.74 -4.87 16 2 C 0.14 6.78 5.92 86.38 0.51 7.29 16 3 N -0.57 -29.22 2.14 -682.96 -1.46 -30.68 16 4 C -0.26 -14.39 8.52 84.03 0.72 -13.68 16 5 H 0.06 3.38 6.65 -2.91 -0.02 3.36 16 6 C -0.04 -2.53 4.93 84.86 0.42 -2.11 16 7 N -0.91 -57.40 11.32 21.65 0.25 -57.15 16 8 Si 0.96 46.45 29.61 68.60 2.03 48.49 16 9 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 10 H -0.30 -14.84 7.11 99.48 0.71 -14.13 16 11 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 12 C 0.16 6.64 2.82 44.11 0.12 6.77 16 13 H 0.08 3.34 7.84 -2.39 -0.02 3.32 16 14 C -0.11 -3.61 4.85 30.63 0.15 -3.46 16 15 C -0.09 -2.20 1.91 -10.92 -0.02 -2.22 16 16 H 0.08 1.86 8.11 -2.39 -0.02 1.84 16 17 C -0.10 -1.84 5.32 30.58 0.16 -1.68 16 18 C -0.12 -1.57 5.88 30.62 0.18 -1.39 16 19 C -0.11 -1.52 5.95 30.78 0.18 -1.33 16 20 C -0.12 -2.17 5.57 30.71 0.17 -2.00 16 21 C 0.14 3.67 2.74 45.08 0.12 3.79 16 22 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 23 N -0.72 -25.15 5.23 -447.60 -2.34 -27.49 16 24 C 0.50 22.97 6.83 87.64 0.60 23.57 16 25 O -0.59 -34.65 17.50 -3.04 -0.05 -34.71 16 26 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.07 3.75 5.31 -2.38 -0.01 3.74 16 30 H 0.01 0.64 8.01 -2.39 -0.02 0.62 16 31 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 32 H 0.05 2.02 6.54 -2.39 -0.02 2.00 16 33 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 34 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 42 H 0.39 12.87 8.72 -92.71 -0.81 12.06 16 Total: -1.00 -74.97 323.92 2.66 -72.32 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: 0.18 Total: 20.56 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: 4.05 Total: 8.67 kcal Atomic # 7 Polarization: -111.77 SS G_CDS: -3.56 Total: -115.33 kcal Atomic # 8 Polarization: -34.65 SS G_CDS: -0.05 Total: -34.71 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.49 kcal Total: -74.97 2.66 -72.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595302911.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.262 kcal (2) G-P(sol) polarization free energy of solvation -74.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds