Wall clock time and date at job start Mon Mar 30 2020 01:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46903 * 110.99815 * 2 1 4 4 C 1.50706 * 109.47096 * 290.37292 * 3 2 1 5 5 H 1.08003 * 119.99835 * 0.02562 * 4 3 2 6 6 C 1.37871 * 119.99621 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99667 * 179.97438 * 6 4 3 8 8 Si 1.86798 * 120.00265 * 0.02562 * 6 4 3 9 9 H 1.48501 * 109.47125 * 89.99811 * 8 6 4 10 10 H 1.48502 * 109.47255 * 209.99557 * 8 6 4 11 11 H 1.48494 * 109.46986 * 329.99832 * 8 6 4 12 12 C 1.46894 * 111.00310 * 123.95465 * 2 1 3 13 13 H 1.08998 * 109.13872 * 289.83074 * 12 2 1 14 14 C 1.53178 * 109.30799 * 170.33712 * 12 2 1 15 15 C 1.52935 * 108.21806 * 286.57223 * 14 12 2 16 16 H 1.08996 * 109.43417 * 52.03683 * 15 14 12 17 17 C 1.52763 * 110.78944 * 172.78710 * 15 14 12 18 18 C 1.53194 * 108.87432 * 180.49574 * 17 15 14 19 19 C 1.52922 * 110.16915 * 300.84863 * 18 17 15 20 20 C 1.53198 * 110.06743 * 58.45837 * 19 18 17 21 21 C 1.52713 * 108.98920 * 301.06833 * 20 19 18 22 22 H 1.08997 * 108.75868 * 302.32606 * 21 20 19 23 23 N 1.45377 * 111.69155 * 183.14056 * 21 20 19 24 24 C 1.33639 * 123.18803 * 215.85215 * 23 21 20 25 25 O 1.21283 * 118.04932 * 183.77919 * 24 23 21 26 26 H 1.08999 * 109.46714 * 287.73287 * 1 2 3 27 27 H 1.08999 * 109.47651 * 47.73760 * 1 2 3 28 28 H 1.09005 * 109.47271 * 167.73576 * 1 2 3 29 29 H 1.08998 * 109.47166 * 50.37742 * 3 2 1 30 30 H 1.09001 * 109.47067 * 170.37475 * 3 2 1 31 31 H 0.97006 * 120.00188 * 179.97438 * 7 6 4 32 32 H 1.08994 * 109.71404 * 166.89010 * 14 12 2 33 33 H 1.09004 * 109.74419 * 46.26782 * 14 12 2 34 34 H 1.08995 * 109.57325 * 300.31116 * 17 15 14 35 35 H 1.08996 * 109.56957 * 60.68143 * 17 15 14 36 36 H 1.08997 * 109.39124 * 60.71887 * 18 17 15 37 37 H 1.09000 * 109.39275 * 180.51756 * 18 17 15 38 38 H 1.09001 * 109.06064 * 298.44094 * 19 18 17 39 39 H 1.09000 * 109.60639 * 178.81297 * 19 18 17 40 40 H 1.08993 * 109.56887 * 181.19206 * 20 19 18 41 41 H 1.08993 * 109.56559 * 60.94986 * 20 19 18 42 42 H 0.96996 * 118.40768 * 35.86166 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.7136 2.0177 -1.3320 5 1 1.1950 1.4650 -2.1014 6 6 2.1170 3.3148 -1.5679 7 7 1.8716 3.8786 -2.7305 8 14 3.0135 4.2709 -0.2369 9 1 4.4764 4.0544 -0.3719 10 1 2.7121 5.7181 -0.3787 11 1 2.5646 3.8003 1.0981 12 6 1.9955 -0.7659 1.1375 13 1 1.7975 -0.2187 2.0591 14 6 3.5075 -0.9460 0.9705 15 6 3.7472 -1.9757 -0.1346 16 1 3.1894 -1.6878 -1.0257 17 6 5.2336 -2.0707 -0.4740 18 6 5.4219 -3.1022 -1.5909 19 6 4.8966 -4.4666 -1.1426 20 6 3.4147 -4.3622 -0.7683 21 6 3.2566 -3.3390 0.3543 22 1 3.8700 -3.6492 1.2002 23 7 1.8781 -3.2465 0.8068 24 6 1.3114 -2.1006 1.1962 25 8 0.1767 -2.1415 1.6223 26 1 -0.3633 0.3130 0.9789 27 1 -0.3634 0.6911 -0.7605 28 1 -0.3634 -1.0042 -0.2183 29 1 1.5138 1.9455 0.7916 30 1 3.0715 1.3476 0.1718 31 1 2.1551 4.7914 -2.8964 32 1 3.9408 -1.3021 1.9051 33 1 3.9630 0.0044 0.6925 34 1 5.5942 -1.0987 -0.8103 35 1 5.7905 -2.3832 0.4092 36 1 4.8716 -2.7822 -2.4757 37 1 6.4814 -3.1835 -1.8336 38 1 5.4664 -4.8000 -0.2752 39 1 5.0157 -5.1880 -1.9509 40 1 3.0543 -5.3336 -0.4301 41 1 2.8403 -4.0421 -1.6375 42 1 1.3438 -4.0558 0.8272 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595344105.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:43 Heat of formation + Delta-G solvation = -45.210651 kcal Electronic energy + Delta-G solvation = -21759.975070 eV Core-core repulsion = 18739.029571 eV Total energy + Delta-G solvation = -3020.945499 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.74071 -38.22134 -36.50014 -34.37731 -32.90684 -32.13138 -29.50331 -28.88712 -27.86539 -24.49128 -23.68893 -22.64957 -22.02044 -20.61741 -20.07708 -18.40193 -17.00086 -16.76541 -16.17422 -15.66752 -14.82309 -14.55659 -14.43535 -14.24583 -13.83765 -13.71651 -13.36655 -12.94747 -12.70131 -12.59825 -12.26915 -12.16088 -11.72090 -11.52063 -11.44605 -11.24361 -11.01372 -10.82394 -10.61898 -10.46376 -10.39438 -10.28945 -10.06252 -9.92914 -9.30428 -9.25879 -8.86709 -8.57608 -7.45590 -6.06522 -4.03649 2.83050 3.25776 3.34468 3.36101 3.42672 4.39998 4.51283 4.55028 4.68251 4.80843 5.01330 5.03180 5.14666 5.24625 5.27247 5.30119 5.36599 5.47725 5.53301 5.71077 5.80561 5.83394 5.93044 6.04612 6.06624 6.12863 6.21592 6.24588 6.28710 6.34430 6.38148 6.66580 6.76507 6.88214 6.94061 6.97982 7.48515 7.55508 7.82820 7.95473 8.44536 8.62516 9.02920 9.54676 11.06542 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019254 B = 0.006682 C = 0.005606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.924266 B = 4189.052499 C = 4993.215515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.512 5.512 3 C 0.160 3.840 4 C -0.506 4.506 5 H 0.081 0.919 6 C 0.069 3.931 7 N -0.899 5.899 8 Si 0.871 3.129 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.267 1.267 12 C 0.066 3.934 13 H 0.063 0.937 14 C -0.115 4.115 15 C -0.094 4.094 16 H 0.101 0.899 17 C -0.109 4.109 18 C -0.123 4.123 19 C -0.113 4.113 20 C -0.127 4.127 21 C 0.145 3.855 22 H 0.063 0.937 23 N -0.713 5.713 24 C 0.537 3.463 25 O -0.558 6.558 26 H 0.019 0.981 27 H 0.079 0.921 28 H 0.054 0.946 29 H -0.009 1.009 30 H 0.030 0.970 31 H 0.264 0.736 32 H 0.062 0.938 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.900 -15.823 5.781 18.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.238 5.238 3 C 0.034 3.966 4 C -0.544 4.544 5 H 0.099 0.901 6 C -0.132 4.132 7 N -0.538 5.538 8 Si 0.699 3.301 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.192 1.192 12 C -0.045 4.045 13 H 0.081 0.919 14 C -0.152 4.152 15 C -0.113 4.113 16 H 0.119 0.881 17 C -0.147 4.147 18 C -0.160 4.160 19 C -0.151 4.151 20 C -0.165 4.165 21 C 0.040 3.960 22 H 0.081 0.919 23 N -0.364 5.364 24 C 0.323 3.677 25 O -0.435 6.435 26 H 0.037 0.963 27 H 0.098 0.902 28 H 0.072 0.928 29 H 0.009 0.991 30 H 0.047 0.953 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 7.610 -15.690 5.488 18.281 hybrid contribution 0.054 0.700 1.356 1.527 sum 7.664 -14.990 6.844 18.173 Atomic orbital electron populations 1.22347 0.87234 1.01452 1.00363 1.62110 1.08142 1.16523 1.37040 1.20310 0.95014 0.83408 0.97863 1.20967 1.37687 0.97637 0.98094 0.90067 1.24869 0.95769 0.97329 0.95242 1.69890 1.47362 1.14178 1.22393 0.86919 0.80547 0.79648 0.83035 1.20095 1.21158 1.19227 1.21610 0.95218 0.91669 0.96026 0.91885 1.21814 0.94248 1.00998 0.98161 1.21331 0.96892 0.92617 1.00415 0.88092 1.21504 0.95097 0.99776 0.98302 1.21579 1.00836 0.94598 0.99001 1.21465 0.94861 0.97647 1.01089 1.21816 0.97615 0.98323 0.98780 1.20860 0.82019 0.96837 0.96278 0.91906 1.45478 1.14057 1.10200 1.66666 1.20129 0.86047 0.85919 0.75567 1.90711 1.19097 1.87128 1.46598 0.96260 0.90184 0.92754 0.99140 0.95263 0.92648 0.91897 0.89305 0.90824 0.92171 0.91466 0.91954 0.92086 0.91704 0.91749 0.90825 0.77089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 8.25 60.07 0.50 1.23 16 2 N -0.51 -10.81 4.20 -237.98 -1.00 -11.81 16 3 C 0.16 3.80 3.66 -4.97 -0.02 3.78 16 4 C -0.51 -14.10 8.93 -34.44 -0.31 -14.40 16 5 H 0.08 2.49 7.70 -52.48 -0.40 2.08 16 6 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 7 N -0.90 -27.20 13.96 55.43 0.77 -26.43 16 8 Si 0.87 21.07 27.47 -169.99 -4.67 16.40 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 12 C 0.07 1.19 2.19 -69.07 -0.15 1.03 16 13 H 0.06 1.17 8.11 -51.93 -0.42 0.75 16 14 C -0.11 -1.70 4.89 -26.67 -0.13 -1.83 16 15 C -0.09 -1.24 1.92 -90.82 -0.17 -1.41 16 16 H 0.10 1.65 7.78 -51.93 -0.40 1.24 16 17 C -0.11 -1.19 5.33 -26.75 -0.14 -1.33 16 18 C -0.12 -1.18 5.90 -26.67 -0.16 -1.33 16 19 C -0.11 -0.93 5.92 -26.67 -0.16 -1.09 16 20 C -0.13 -1.19 5.60 -26.78 -0.15 -1.34 16 21 C 0.15 1.63 2.71 -68.72 -0.19 1.45 16 22 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 23 N -0.71 -9.56 5.24 -55.20 -0.29 -9.85 16 24 C 0.54 9.27 6.40 -11.79 -0.08 9.19 16 25 O -0.56 -11.31 15.68 5.56 0.09 -11.22 16 26 H 0.02 0.41 8.03 -51.93 -0.42 -0.01 16 27 H 0.08 1.82 6.90 -51.93 -0.36 1.47 16 28 H 0.05 1.13 6.55 -51.93 -0.34 0.79 16 29 H -0.01 -0.22 7.14 -51.93 -0.37 -0.60 16 30 H 0.03 0.67 5.23 -51.93 -0.27 0.40 16 31 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 33 H 0.09 1.43 5.89 -51.93 -0.31 1.13 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.39 4.68 8.71 -40.82 -0.36 4.33 16 LS Contribution 316.22 15.07 4.77 4.77 Total: -1.00 -31.33 316.22 -8.63 -39.95 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -7.04 Total: 2.37 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: -1.25 Total: -4.17 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: -0.52 Total: -48.09 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.09 Total: -11.22 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.67 Total: 16.40 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.33 -8.63 -39.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595344105.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.258 kcal (2) G-P(sol) polarization free energy of solvation -31.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds