Wall clock time and date at job start Mon Mar 30 2020 01:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46903 * 110.99815 * 2 1 4 4 C 1.50706 * 109.47096 * 290.37292 * 3 2 1 5 5 H 1.08003 * 119.99835 * 0.02562 * 4 3 2 6 6 C 1.37871 * 119.99621 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99667 * 179.97438 * 6 4 3 8 8 Si 1.86798 * 120.00265 * 0.02562 * 6 4 3 9 9 H 1.48501 * 109.47125 * 89.99811 * 8 6 4 10 10 H 1.48502 * 109.47255 * 209.99557 * 8 6 4 11 11 H 1.48494 * 109.46986 * 329.99832 * 8 6 4 12 12 C 1.46894 * 111.00310 * 123.95465 * 2 1 3 13 13 H 1.08998 * 109.13872 * 289.83074 * 12 2 1 14 14 C 1.53178 * 109.30799 * 170.33712 * 12 2 1 15 15 C 1.52935 * 108.21806 * 286.57223 * 14 12 2 16 16 H 1.08996 * 109.43417 * 52.03683 * 15 14 12 17 17 C 1.52763 * 110.78944 * 172.78710 * 15 14 12 18 18 C 1.53194 * 108.87432 * 180.49574 * 17 15 14 19 19 C 1.52922 * 110.16915 * 300.84863 * 18 17 15 20 20 C 1.53198 * 110.06743 * 58.45837 * 19 18 17 21 21 C 1.52713 * 108.98920 * 301.06833 * 20 19 18 22 22 H 1.08997 * 108.75868 * 302.32606 * 21 20 19 23 23 N 1.45377 * 111.69155 * 183.14056 * 21 20 19 24 24 C 1.33639 * 123.18803 * 215.85215 * 23 21 20 25 25 O 1.21283 * 118.04932 * 183.77919 * 24 23 21 26 26 H 1.08999 * 109.46714 * 287.73287 * 1 2 3 27 27 H 1.08999 * 109.47651 * 47.73760 * 1 2 3 28 28 H 1.09005 * 109.47271 * 167.73576 * 1 2 3 29 29 H 1.08998 * 109.47166 * 50.37742 * 3 2 1 30 30 H 1.09001 * 109.47067 * 170.37475 * 3 2 1 31 31 H 0.97006 * 120.00188 * 179.97438 * 7 6 4 32 32 H 1.08994 * 109.71404 * 166.89010 * 14 12 2 33 33 H 1.09004 * 109.74419 * 46.26782 * 14 12 2 34 34 H 1.08995 * 109.57325 * 300.31116 * 17 15 14 35 35 H 1.08996 * 109.56957 * 60.68143 * 17 15 14 36 36 H 1.08997 * 109.39124 * 60.71887 * 18 17 15 37 37 H 1.09000 * 109.39275 * 180.51756 * 18 17 15 38 38 H 1.09001 * 109.06064 * 298.44094 * 19 18 17 39 39 H 1.09000 * 109.60639 * 178.81297 * 19 18 17 40 40 H 1.08993 * 109.56887 * 181.19206 * 20 19 18 41 41 H 1.08993 * 109.56559 * 60.94986 * 20 19 18 42 42 H 0.96996 * 118.40768 * 35.86166 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.7136 2.0177 -1.3320 5 1 1.1950 1.4650 -2.1014 6 6 2.1170 3.3148 -1.5679 7 7 1.8716 3.8786 -2.7305 8 14 3.0135 4.2709 -0.2369 9 1 4.4764 4.0544 -0.3719 10 1 2.7121 5.7181 -0.3787 11 1 2.5646 3.8003 1.0981 12 6 1.9955 -0.7659 1.1375 13 1 1.7975 -0.2187 2.0591 14 6 3.5075 -0.9460 0.9705 15 6 3.7472 -1.9757 -0.1346 16 1 3.1894 -1.6878 -1.0257 17 6 5.2336 -2.0707 -0.4740 18 6 5.4219 -3.1022 -1.5909 19 6 4.8966 -4.4666 -1.1426 20 6 3.4147 -4.3622 -0.7683 21 6 3.2566 -3.3390 0.3543 22 1 3.8700 -3.6492 1.2002 23 7 1.8781 -3.2465 0.8068 24 6 1.3114 -2.1006 1.1962 25 8 0.1767 -2.1415 1.6223 26 1 -0.3633 0.3130 0.9789 27 1 -0.3634 0.6911 -0.7605 28 1 -0.3634 -1.0042 -0.2183 29 1 1.5138 1.9455 0.7916 30 1 3.0715 1.3476 0.1718 31 1 2.1551 4.7914 -2.8964 32 1 3.9408 -1.3021 1.9051 33 1 3.9630 0.0044 0.6925 34 1 5.5942 -1.0987 -0.8103 35 1 5.7905 -2.3832 0.4092 36 1 4.8716 -2.7822 -2.4757 37 1 6.4814 -3.1835 -1.8336 38 1 5.4664 -4.8000 -0.2752 39 1 5.0157 -5.1880 -1.9509 40 1 3.0543 -5.3336 -0.4301 41 1 2.8403 -4.0421 -1.6375 42 1 1.3438 -4.0558 0.8272 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595344105.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:43 Heat of formation + Delta-G solvation = -67.760428 kcal Electronic energy + Delta-G solvation = -21760.952901 eV Core-core repulsion = 18739.029571 eV Total energy + Delta-G solvation = -3021.923330 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.98123 -39.32885 -38.13034 -35.45779 -34.76501 -33.58975 -30.62998 -30.24870 -29.52770 -26.22513 -25.09106 -23.57580 -23.08827 -22.43988 -20.90964 -19.73392 -18.93542 -18.05238 -17.49544 -17.14539 -16.44654 -15.88994 -15.69476 -15.37974 -15.21021 -14.94432 -14.72454 -14.47574 -14.17344 -14.01127 -13.63567 -13.43737 -12.95934 -12.92828 -12.67882 -12.59942 -12.49084 -12.30802 -12.15703 -11.90752 -11.69857 -11.50834 -11.34669 -11.18640 -11.07677 -10.78029 -10.57762 -10.00607 -9.19621 -8.27594 -6.31041 1.34730 1.37125 1.43756 1.47825 2.27189 2.34703 3.04451 3.18079 3.43790 3.67291 3.74788 3.82761 4.12916 4.19740 4.27130 4.35194 4.43697 4.52388 4.54478 4.59535 4.62389 4.67019 4.79210 4.81422 4.96750 5.02117 5.05686 5.08158 5.11797 5.26997 5.32215 5.36918 5.42388 5.46136 5.52493 5.67729 5.84296 5.91772 6.16258 6.27132 6.54800 6.74079 7.17461 7.31554 8.89056 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019254 B = 0.006682 C = 0.005606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.924266 B = 4189.052499 C = 4993.215515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.520 5.520 3 C 0.172 3.828 4 C -0.513 4.513 5 H 0.035 0.965 6 C 0.011 3.989 7 N -0.947 5.947 8 Si 0.943 3.057 9 H -0.257 1.257 10 H -0.284 1.284 11 H -0.253 1.253 12 C 0.062 3.938 13 H 0.059 0.941 14 C -0.112 4.112 15 C -0.093 4.093 16 H 0.061 0.939 17 C -0.104 4.104 18 C -0.123 4.123 19 C -0.107 4.107 20 C -0.124 4.124 21 C 0.144 3.856 22 H 0.093 0.907 23 N -0.697 5.697 24 C 0.535 3.465 25 O -0.595 6.595 26 H 0.018 0.982 27 H 0.054 0.946 28 H 0.058 0.942 29 H -0.015 1.015 30 H 0.047 0.953 31 H 0.267 0.733 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.045 0.955 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.052 0.948 42 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.465 -17.599 7.869 21.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 N -0.246 5.246 3 C 0.045 3.955 4 C -0.551 4.551 5 H 0.054 0.946 6 C -0.187 4.187 7 N -0.588 5.588 8 Si 0.766 3.234 9 H -0.181 1.181 10 H -0.209 1.209 11 H -0.177 1.177 12 C -0.049 4.049 13 H 0.076 0.924 14 C -0.149 4.149 15 C -0.112 4.112 16 H 0.079 0.921 17 C -0.142 4.142 18 C -0.161 4.161 19 C -0.145 4.145 20 C -0.162 4.162 21 C 0.040 3.960 22 H 0.111 0.889 23 N -0.347 5.347 24 C 0.321 3.679 25 O -0.475 6.475 26 H 0.036 0.964 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.002 0.998 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.114 0.886 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.063 0.937 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.105 0.895 41 H 0.071 0.929 42 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 10.204 -17.519 7.564 21.639 hybrid contribution -0.784 1.175 0.613 1.540 sum 9.420 -16.344 8.177 20.560 Atomic orbital electron populations 1.22163 0.87825 1.00882 0.99300 1.61979 1.07701 1.15449 1.39470 1.20067 0.95939 0.84427 0.95028 1.21138 1.37097 0.97921 0.98942 0.94628 1.25795 0.96680 0.98394 0.97785 1.70049 1.48981 1.14818 1.24908 0.85776 0.79891 0.77691 0.80028 1.18110 1.20938 1.17713 1.21732 0.97364 0.91603 0.94248 0.92367 1.21850 0.91657 1.01067 1.00330 1.21273 0.98290 0.93335 0.98265 0.92092 1.21478 0.93314 0.99656 0.99783 1.21586 1.01628 0.95132 0.97718 1.21451 0.93809 0.96840 1.02355 1.21813 0.98556 0.98592 0.97208 1.21094 0.80757 0.96204 0.97969 0.88935 1.45424 1.15081 1.09412 1.64810 1.19982 0.85563 0.86575 0.75763 1.90695 1.20539 1.87694 1.48597 0.96382 0.92690 0.92354 0.99756 0.93490 0.92401 0.88556 0.90711 0.92362 0.89566 0.93651 0.90379 0.90010 0.90482 0.89474 0.92874 0.75864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.08 8.25 127.69 1.05 3.14 16 2 N -0.52 -22.47 4.20 -906.82 -3.81 -26.28 16 3 C 0.17 8.24 3.66 85.56 0.31 8.55 16 4 C -0.51 -29.70 8.93 25.60 0.23 -29.47 16 5 H 0.04 2.33 7.70 -2.91 -0.02 2.30 16 6 C 0.01 0.63 5.47 84.65 0.46 1.09 16 7 N -0.95 -59.10 13.96 21.45 0.30 -58.80 16 8 Si 0.94 43.34 27.47 68.60 1.88 45.23 16 9 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 11 H -0.25 -10.99 6.54 99.48 0.65 -10.34 16 12 C 0.06 2.17 2.19 44.04 0.10 2.26 16 13 H 0.06 2.11 8.11 -2.39 -0.02 2.09 16 14 C -0.11 -3.08 4.89 30.63 0.15 -2.93 16 15 C -0.09 -2.29 1.92 -10.92 -0.02 -2.31 16 16 H 0.06 2.02 7.78 -2.39 -0.02 2.00 16 17 C -0.10 -2.02 5.33 30.58 0.16 -1.86 16 18 C -0.12 -2.07 5.90 30.63 0.18 -1.89 16 19 C -0.11 -1.36 5.92 30.63 0.18 -1.18 16 20 C -0.12 -1.94 5.60 30.56 0.17 -1.77 16 21 C 0.14 2.79 2.71 45.08 0.12 2.91 16 22 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 23 N -0.70 -17.27 5.24 -447.57 -2.34 -19.62 16 24 C 0.53 17.99 6.40 87.64 0.56 18.55 16 25 O -0.59 -23.97 15.68 -3.04 -0.05 -24.01 16 26 H 0.02 0.78 8.03 -2.39 -0.02 0.76 16 27 H 0.05 2.67 6.90 -2.39 -0.02 2.65 16 28 H 0.06 2.52 6.55 -2.38 -0.02 2.50 16 29 H -0.02 -0.75 7.14 -2.39 -0.02 -0.77 16 30 H 0.05 2.11 5.23 -2.39 -0.01 2.09 16 31 H 0.27 15.51 8.31 -92.70 -0.77 14.74 16 32 H 0.10 2.04 8.13 -2.39 -0.02 2.02 16 33 H 0.07 2.29 5.89 -2.38 -0.01 2.27 16 34 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.08 0.77 8.14 -2.39 -0.02 0.76 16 39 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.40 8.69 8.71 -92.71 -0.81 7.88 16 Total: -1.00 -70.91 316.22 -0.22 -71.13 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 0.14 Total: 17.25 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: 3.66 Total: -4.89 kcal Atomic # 7 Polarization: -98.84 SS G_CDS: -5.86 Total: -104.69 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.05 Total: -24.01 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 1.88 Total: 45.23 kcal Total: -70.91 -0.22 -71.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595344105.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.365 kcal (2) G-P(sol) polarization free energy of solvation -70.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds