Wall clock time and date at job start Mon Mar 30 2020 01:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46897 * 111.00037 * 2 1 4 4 C 1.50698 * 109.47169 * 71.72433 * 3 2 1 5 5 H 1.08002 * 120.00426 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00208 * 180.02562 * 4 3 2 7 7 N 1.31507 * 120.00038 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99958 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47126 * 60.00112 * 8 6 4 10 10 H 1.48500 * 109.46787 * 179.97438 * 8 6 4 11 11 H 1.48492 * 109.47085 * 299.99435 * 8 6 4 12 12 C 1.46899 * 111.00141 * 236.04743 * 2 1 3 13 13 H 1.08993 * 109.30323 * 179.74215 * 12 2 1 14 14 C 1.53185 * 109.30428 * 60.14413 * 12 2 1 15 15 C 1.52933 * 108.21547 * 193.02586 * 14 12 2 16 16 H 1.09008 * 109.31673 * 308.02846 * 15 14 12 17 17 C 1.52761 * 110.90231 * 187.28305 * 15 14 12 18 18 C 1.53201 * 108.87657 * 179.42702 * 17 15 14 19 19 C 1.53135 * 110.02132 * 59.42683 * 18 17 15 20 20 C 1.53198 * 109.83127 * 301.15491 * 19 18 17 21 21 C 1.52714 * 108.99468 * 59.26325 * 20 19 18 22 22 H 1.09001 * 108.75375 * 57.56238 * 21 20 19 23 23 N 1.45375 * 111.69388 * 176.74244 * 21 20 19 24 24 C 1.33633 * 123.18592 * 144.14610 * 23 21 20 25 25 O 1.21282 * 118.04872 * 176.21721 * 24 23 21 26 26 H 1.09000 * 109.46971 * 183.95257 * 1 2 3 27 27 H 1.09004 * 109.47377 * 303.95393 * 1 2 3 28 28 H 1.09003 * 109.47116 * 63.95389 * 1 2 3 29 29 H 1.08999 * 109.47319 * 191.72011 * 3 2 1 30 30 H 1.08997 * 109.47292 * 311.72228 * 3 2 1 31 31 H 0.97006 * 120.00325 * 180.02562 * 7 6 4 32 32 H 1.08999 * 109.71016 * 73.34649 * 14 12 2 33 33 H 1.08998 * 109.74677 * 312.72984 * 14 12 2 34 34 H 1.08998 * 109.56910 * 299.24503 * 17 15 14 35 35 H 1.09002 * 109.57340 * 59.49144 * 17 15 14 36 36 H 1.08997 * 109.39096 * 179.57568 * 18 17 15 37 37 H 1.09000 * 109.38933 * 299.37978 * 18 17 15 38 38 H 1.08997 * 109.55295 * 180.98383 * 19 18 17 39 39 H 1.09004 * 109.36226 * 61.20210 * 19 18 17 40 40 H 1.09009 * 109.56506 * 299.37973 * 20 19 18 41 41 H 1.09004 * 109.57265 * 179.15150 * 20 19 18 42 42 H 0.97000 * 118.40860 * 324.14212 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.7595 2.0000 1.3491 5 1 1.2681 1.4370 2.1288 6 6 2.1711 3.2941 1.5882 7 7 2.7700 3.9796 0.6391 8 14 1.8779 4.0735 3.2604 9 1 2.5705 3.2779 4.3056 10 1 2.4103 5.4598 3.2604 11 1 0.4207 4.1024 3.5444 12 6 1.9955 -0.7659 -1.1376 13 1 3.0849 -0.7441 -1.1134 14 6 1.5051 -0.1340 -2.4440 15 6 1.7831 -1.1152 -3.5836 16 1 2.8292 -1.4199 -3.5500 17 6 1.4832 -0.4763 -4.9383 18 6 1.7903 -1.4913 -6.0440 19 6 0.9329 -2.7463 -5.8565 20 6 1.2135 -3.3672 -4.4844 21 6 0.8896 -2.3424 -3.3994 22 1 -0.1513 -2.0370 -3.5054 23 7 1.0632 -2.8974 -2.0670 24 6 1.5254 -2.1875 -1.0335 25 8 1.5674 -2.7238 0.0535 26 1 -0.3633 -1.0252 0.0708 27 1 -0.3634 0.5740 0.8524 28 1 -0.3633 0.4513 -0.9233 29 1 3.0650 1.3500 -0.2087 30 1 1.4872 1.9557 -0.7670 31 1 3.0599 4.8899 0.8074 32 1 2.0387 0.7993 -2.6239 33 1 0.4346 0.0611 -2.3796 34 1 0.4314 -0.1938 -4.9839 35 1 2.1051 0.4091 -5.0702 36 1 1.5719 -1.0463 -7.0147 37 1 2.8442 -1.7658 -6.0006 38 1 1.1699 -3.4699 -6.6364 39 1 -0.1213 -2.4770 -5.9230 40 1 2.2647 -3.6483 -4.4190 41 1 0.5903 -4.2512 -4.3493 42 1 0.8323 -3.8281 -1.9211 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595344107.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:48 Heat of formation + Delta-G solvation = -47.691795 kcal Electronic energy + Delta-G solvation = -21431.235448 eV Core-core repulsion = 18410.182359 eV Total energy + Delta-G solvation = -3021.053089 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.75322 -38.18236 -36.55034 -34.33631 -32.96111 -32.06782 -29.50031 -28.64997 -27.14749 -25.11635 -23.69199 -22.73839 -22.03833 -20.81533 -20.03325 -18.61017 -16.86219 -16.51205 -15.94574 -15.45714 -14.90701 -14.61825 -14.36645 -14.26520 -14.14469 -13.69976 -13.44639 -13.09570 -12.71758 -12.50737 -12.14660 -11.93512 -11.77594 -11.57221 -11.37735 -11.05612 -10.93539 -10.81038 -10.73695 -10.65977 -10.45734 -10.45205 -10.24499 -9.91177 -9.33295 -9.13119 -8.85676 -8.39828 -7.19731 -6.00322 -4.00848 3.02261 3.37305 3.39956 3.40429 3.45482 4.40033 4.42545 4.46018 4.59996 4.85449 4.90395 4.93910 5.04160 5.15802 5.23460 5.25916 5.32957 5.35447 5.52744 5.60898 5.63973 5.75661 5.88289 5.88786 5.91977 6.00330 6.04823 6.10039 6.14473 6.26517 6.28158 6.52817 6.75303 7.02682 7.21138 7.29558 7.53442 7.83187 8.06716 8.16844 8.52916 8.62031 9.06834 9.63098 11.10325 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.030239 B = 0.004891 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.720818 B = 5723.381086 C = 6385.610456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.515 5.515 3 C 0.195 3.805 4 C -0.505 4.505 5 H 0.064 0.936 6 C 0.056 3.944 7 N -0.901 5.901 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.077 3.923 13 H 0.105 0.895 14 C -0.155 4.155 15 C -0.094 4.094 16 H 0.077 0.923 17 C -0.110 4.110 18 C -0.122 4.122 19 C -0.115 4.115 20 C -0.127 4.127 21 C 0.146 3.854 22 H 0.065 0.935 23 N -0.725 5.725 24 C 0.525 3.475 25 O -0.532 6.532 26 H 0.045 0.955 27 H 0.077 0.923 28 H 0.016 0.984 29 H 0.029 0.971 30 H -0.003 1.003 31 H 0.261 0.739 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.723 -11.806 -15.848 20.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.238 5.238 3 C 0.071 3.929 4 C -0.544 4.544 5 H 0.082 0.918 6 C -0.145 4.145 7 N -0.541 5.541 8 Si 0.727 3.273 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.203 1.203 12 C -0.035 4.035 13 H 0.123 0.877 14 C -0.194 4.194 15 C -0.114 4.114 16 H 0.096 0.904 17 C -0.148 4.148 18 C -0.159 4.159 19 C -0.153 4.153 20 C -0.165 4.165 21 C 0.040 3.960 22 H 0.083 0.917 23 N -0.379 5.379 24 C 0.311 3.689 25 O -0.407 6.407 26 H 0.064 0.936 27 H 0.095 0.905 28 H 0.034 0.966 29 H 0.047 0.953 30 H 0.015 0.985 31 H 0.071 0.929 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -3.394 -11.887 -14.841 19.316 hybrid contribution -0.460 0.567 0.046 0.731 sum -3.853 -11.321 -14.795 19.024 Atomic orbital electron populations 1.22309 0.88844 0.99869 1.00566 1.62193 1.07016 1.17811 1.36808 1.19763 0.95145 0.80838 0.97170 1.21133 1.38019 0.97377 0.97848 0.91815 1.24960 0.95322 0.97105 0.97134 1.69939 1.40474 1.10883 1.32766 0.86544 0.78512 0.78023 0.84254 1.20118 1.21404 1.20291 1.21618 1.01251 0.89941 0.90725 0.87726 1.22446 1.03048 0.99614 0.94302 1.21359 0.99969 0.94634 0.95434 0.90430 1.21520 1.02162 0.98183 0.92935 1.21622 1.00118 0.95551 0.98616 1.21524 1.00395 0.97266 0.96091 1.21832 1.02447 0.97887 0.94358 1.20787 0.99404 0.93834 0.81959 0.91733 1.45655 1.67918 1.14899 1.09382 1.20374 0.76158 0.89003 0.83330 1.90719 1.53648 1.70275 1.26044 0.93647 0.90462 0.96557 0.95260 0.98511 0.92919 0.89925 0.90773 0.91612 0.90995 0.91812 0.91853 0.91653 0.91771 0.91185 0.91500 0.77182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 8.78 60.06 0.53 1.20 16 2 N -0.51 -11.69 4.45 -237.98 -1.06 -12.75 16 3 C 0.20 5.07 4.02 -4.98 -0.02 5.05 16 4 C -0.51 -14.46 8.53 -34.44 -0.29 -14.75 16 5 H 0.06 1.84 7.51 -52.49 -0.39 1.45 16 6 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 7 N -0.90 -26.63 13.29 55.43 0.74 -25.89 16 8 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 C 0.08 1.44 2.40 -69.07 -0.17 1.27 16 13 H 0.11 1.99 7.99 -51.93 -0.42 1.57 16 14 C -0.15 -2.36 3.98 -26.67 -0.11 -2.47 16 15 C -0.09 -1.09 1.93 -90.82 -0.18 -1.26 16 16 H 0.08 0.91 8.11 -51.92 -0.42 0.49 16 17 C -0.11 -1.04 5.33 -26.75 -0.14 -1.18 16 18 C -0.12 -0.93 5.91 -26.56 -0.16 -1.09 16 19 C -0.11 -0.80 5.93 -26.56 -0.16 -0.96 16 20 C -0.13 -1.02 5.59 -26.78 -0.15 -1.17 16 21 C 0.15 1.54 2.71 -68.73 -0.19 1.36 16 22 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 23 N -0.72 -9.57 5.24 -55.20 -0.29 -9.86 16 24 C 0.52 9.36 6.00 -11.79 -0.07 9.29 16 25 O -0.53 -11.71 17.26 5.56 0.10 -11.62 16 26 H 0.04 0.90 6.94 -51.93 -0.36 0.54 16 27 H 0.08 1.70 7.18 -51.93 -0.37 1.33 16 28 H 0.02 0.31 6.05 -51.93 -0.31 0.00 16 29 H 0.03 0.81 7.90 -51.93 -0.41 0.40 16 30 H 0.00 -0.08 7.48 -51.93 -0.39 -0.47 16 31 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.08 1.36 7.58 -51.93 -0.39 0.96 16 33 H 0.07 1.17 5.81 -51.93 -0.30 0.87 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.39 4.62 8.71 -40.82 -0.36 4.27 16 LS Contribution 320.51 15.07 4.83 4.83 Total: -1.00 -32.28 320.51 -8.97 -41.25 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -7.07 Total: 0.28 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -1.20 Total: -3.21 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: -0.61 Total: -48.50 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.10 Total: -11.62 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.28 -8.97 -41.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595344107.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.443 kcal (2) G-P(sol) polarization free energy of solvation -32.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds